Non-Coding RNA Search

Ss1.1-Pig4-TMW8023A20.3

Sequence:


               
               CAGGATCGAAGCCAGAGCATCTTCAGATATTTGGAAAGCTAACACCACACGGATGGCAGC
ACCTATGTTAAGACTTTGTTGAGAAGTATCTGGGCTTGAAGGTTGAAATTGATGCCCGCG
TGGCCCCGTCCTTCATAATCAATGCATTAAGATTGAGGACAGAGATTCCAGCTCTTTCCA
CTGCATGGGCTCTGGCCTCTATTATTTCCTGGGTTGACTACTAACTTAATTCTGTAGTTT
AAAACATCAGCTTCTGGCATACTTGGGTATCCTCCATTAAATATTTGGCATTTTATCCTA
GCAGCTTCCTGGGTTGATACCTTTTGGTGAAAGGGGTGGCTGGAGGAAGAAAAAGTGCGG
CGTGACAGAAAATTACAGAAAGCAGTGAATGTCAAAACCAGGACGACTCCTTCACACCCC
TAAGATCTGCACCGTGGTGACCAGGACTCAGTGAAAGACTTCTTACAGGACCTAGGGATT
GACAGAGGGGCTGTTATATTAGTCTTGCCCCTTAATTTTCTTTATGCCTCTTCCCAAGGC
AGTCTCAAATTTCCAGTTAGCCTTTGCTTCCTTTATATATGGACTCAAACTTGTACCCAA
GTTAGAAAGAGCTAACTTTCTGGAGTGTGAGGATGAAGATAAAAGGTTATACCTGGTGTC
TGTCCACATTAGATTGTCCATGGGACAGAGAGCACTCTCCTAGGACTAAATTTTTGATGT
GAAACACCGTTGCTTAAGGACTTCCCTTCTCATTCTGACTAGAAGAATTACTTATATAAC
CATTATTTATTGCATTCAACTGGGTTGAGTACATTGCTCCAACCAGTCGGAGGACAATTT
AATACGTCATTACTTATTTTGAGAGAAGACCATCATGGAGTTTCATCAGAGTATTTTTAG
GAGGATTGCCACGAATCCCAGTTTCCCCCAAACTTCCATGAGACTCTCGGGATTTTATAC
AGATATTTTCCCCCCTCAGAACCAAGTGCCACTGCTGCTTTGGAAAAACATTCCATGTAA
ATACTGTGGATTCACTGTCAGAAGCTGGACTTGGGAAGCTGGATAAATTGTGCCAGTTTT
TTATTGGCAGACGAGAAATACCAGTTTAACTGATGGAATTAGGATATAGGTTTTCTACAG
TTGTTTCTAATATGCAAGATGCTGACTTTGATGGAATTTATATTTGTACATTTGTAATCT
TGTAATGGTGAAAATGTACATAAAGATGTTTTAATATGTATGTAGTTTTTCAATAAATCC
CAATGCCTTAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGATCGAAGCCAGAGCATCTTCAGATATTTGGAAAGCTAACACCACACGGATGGCAGC
ACCTATGTTAAGACTTTGTTGAGAAGTATCTGGGCTTGAAGGTTGAAATTGATGCCCGCG
TGGCCCCGTCCTTCATAATCAATGCATTAAGATTGAGGACAGAGATTCCAGCTCTTTCCA
CTGCATGGGCTCTGGCCTCTATTATTTCCTGGGTTGACTACTAACTTAATTCTGTAGTTT
AAAACATCAGCTTCTGGCATACTTGGGTATCCTCCATTAAATATTTGGCATTTTATCCTA
GCAGCTTCCTGGGTTGATACCTTTTGGTGAAAGGGGTGGCTGGAGGAAGAAAAAGTGCGG
CGTGACAGAAAATTACAGAAAGCAGTGAATGTCAAAACCAGGACGACTCCTTCACACCCC
TAAGATCTGCACCGTGGTGACCAGGACTCAGTGAAAGACTTCTTACAGGACCTAGGGATT
GACAGAGGGGCTGTTATATTAGTCTTGCCCCTTAATTTTCTTTATGCCTCTTCCCAAGGC
AGTCTCAAATTTCCAGTTAGCCTTTGCTTCCTTTATATATGGACTCAAACTTGTACCCAA
GTTAGAAAGAGCTAACTTTCTGGAGTGTGAGGATGAAGATAAAAGGTTATACCTGGTGTC
TGTCCACATTAGATTGTCCATGGGACAGAGAGCACTCTCCTAGGACTAAATTTTTGATGT
GAAACACCGTTGCTTAAGGACTTCCCTTCTCATTCTGACTAGAAGAATTACTTATATAAC
CATTATTTATTGCATTCAACTGGGTTGAGTACATTGCTCCAACCAGTCGGAGGACAATTT
AATACGTCATTACTTATTTTGAGAGAAGACCATCATGGAGTTTCATCAGAGTATTTTTAG
GAGGATTGCCACGAATCCCAGTTTCCCCCAAACTTCCATGAGACTCTCGGGATTTTATAC
AGATATTTTCCCCCCTCAGAACCAAGTGCCACTGCTGCTTTGGAAAAACATTCCATGTAA
ATACTGTGGATTCACTGTCAGAAGCTGGACTTGGGAAGCTGGATAAATTGTGCCAGTTTT
TTATTGGCAGACGAGAAATACCAGTTTAACTGATGGAATTAGGATATAGGTTTTCTACAG
TTGTTTCTAATATGCAAGATGCTGACTTTGATGGAATTTATATTTGTACATTTGTAATCT
TGTAATGGTGAAAATGTACATAAAGATGTTTTAATATGTATGTAGTTTTTCAATAAATCC
CAATGCCTTAAG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-1268, gnl|bosTau2|chr3 (77123793-77125081)
               

               
               1-1268, gnl|Hg17|chr1 (35871230-35868954)
               

               
               1-1268, gnl|Mm7|chr4 (126037369-126038539)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1268, gnl|bosTau2|chr3 (77123793-77125081)
               

               
               1-1268, gnl|Hg17|chr1 (35871230-35868954)
               

               
               1-1268, gnl|Mm7|chr4 (126037369-126038539)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

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               cbl (0.344392)
               

               
               col (0.195008)
               

               
               rec (0.17307)
               

               
               ski (0.146735)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.344392)
               

               
               col (0.195008)
               

               
               rec (0.17307)
               

               
               ski (0.146735)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

	1-1268, gnl\|bosTau2\|chr3 (77123793-77125081)
	1-1268, gnl\|Hg17\|chr1 (35871230-35868954)
	1-1268, gnl\|Mm7\|chr4 (126037369-126038539)

	cbl (0.344392)
	col (0.195008)
	rec (0.17307)
	ski (0.146735)
	kid (0.129735)
	ova (0.129132)
	thg (0.126791)
	cty (0.10408)
	jej (0.0989218)