Ss1.1-Pig4-TMW8023A21.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GATTAGTCTCCAGAAACGCCAGTGGGAACGCTTTACGAGGTTGTTGTCTAGGAGTGGCCT CCAGAGAAAAGCGTTAGCATGTCGGCTTTGGTCAGAAAGGTGATCAGTACTGTGAAAGCC CCAGCGGCCATTGGTCCTTACAGTCAAGCTGTGTTAGTCGACAGGACCATCTACATTTCA GGACAGATAGGCATGGACCCTGCAAGTGGACAGCTTGTGCCAGGAGGAGTGGTAGAAGAA GCTAAACAGGCTCTTACAAACATGGGTGAAATTCTGAAAGCTGCGGGCTGTGACTTCACG AATGTGGTAAAAACAACCGTTTTGCTGGCAGACATAAATGACTTCAGCACCGTCAACGAC ATCTACAAACAGTATTTCCAGGGTAATTTTCCTGCAAGAGCTGCTTACCAGGTTGCTGCT TTGCCCAAAGGAGGCCGTGTTGAGATTGAAGCAATAGCCATCCAAGGACCTCTCGTGACC GCATCACTTTAAGTGGGCCCAGTGCTATTTAGTCCAGAATTTTAATAATGTTTTTAAATT AATATCTTAATTTTTACAGTTGATGTTGGAAAGTGTAAAGCCAACTGAAACATCTCAAGT TATTTTGGAGACACCATATAATAAGGGGAACTGAAGATTAATGATGAATCTAGTTAGCAA TGTTGTGAGTTACACTTAGGTAACATGTATTACTGGGTGTGGGAAAAAGACACACGTATG ACACAGTTGCTCAGATAAATGAAAGTAAAGGGAAATAACATGTAGGAAAGATGAAAAGTT ACTATTCTTGAGAAATAAAGAGCACACCTAAGTCAGTTAAACCTTATTAATTTAATGATG TGAAATATTTAGTCTCATGTCAGGTATATGATTCTGCTTTTACTTGAGTAAAATTTAAGT TTGAATGGTAGAGGTAAAGAAGAAGAAACTGGACCAAAATTTTATATAGATAGTATTTTT CTAATTTCTAGTGGGAATAATACAGCACGCAGATTTCCCTTGGGGTGATTCCGTTCACTT TTTTAACAGTTTAATTTATACATTAAATCACATTGCTTAAATAAAAGTGGAAGAACCATG AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GATTAGTCTCCAGAAACGCCAGTGGGAACGCTTTACGAGGTTGTTGTCTAGGAGTGGCCT CCAGAGAAAAGCGTTAGCATGTCGGCTTTGGTCAGAAAGGTGATCAGTACTGTGAAAGCC CCAGCGGCCATTGGTCCTTACAGTCAAGCTGTGTTAGTCGACAGGACCATCTACATTTCA GGACAGATAGGCATGGACCCTGCAAGTGGACAGCTTGTGCCAGGAGGAGTGGTAGAAGAA GCTAAACAGGCTCTTACAAACATGGGTGAAATTCTGAAAGCTGCGGGCTGTGACTTCACG AATGTGGTAAAAACAACCGTTTTGCTGGCAGACATAAATGACTTCAGCACCGTCAACGAC ATCTACAAACAGTATTTCCAGGGTAATTTTCCTGCAAGAGCTGCTTACCAGGTTGCTGCT TTGCCCAAAGGAGGCCGTGTTGAGATTGAAGCAATAGCCATCCAAGGACCTCTCGTGACC GCATCACTTTAAGTGGGCCCAGTGCTATTTAGTCCAGAATTTTAATAATGTTTTTAAATT AATATCTTAATTTTTACAGTTGATGTTGGAAAGTGTAAAGCCAACTGAAACATCTCAAGT TATTTTGGAGACACCATATAATAAGGGGAACTGAAGATTAATGATGAATCTAGTTAGCAA TGTTGTGAGTTACACTTAGGTAACATGTATTACTGGGTGTGGGAAAAAGACACACGTATG ACACAGTTGCTCAGATAAATGAAAGTAAAGGGAAATAACATGTAGGAAAGATGAAAAGTT ACTATTCTTGAGAAATAAAGAGCACACCTAAGTCAGTTAAACCTTATTAATTTAATGATG TGAAATATTTAGTCTCATGTCAGGTATATGATTCTGCTTTTACTTGAGTAAAATTTAAGT TTGAATGGTAGAGGTAAAGAAGAAGAAACTGGACCAAAATTTTATATAGATAGTATTTTT CTAATTTCTAGTGGGAATAATACAGCACGCAGATTTCCCTTGGGGTGATTCCGTTCACTT TTTTAACAGTTTAATTTATACATTAAATCACATTGCTTAAATAAAAGTGGAAGAACCATG AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 132-250, gnl|bosTau2|chr14 (39642095-39642213) | |
| 132-250, gnl|canFam2|chr13 (3353495-3353618) | |
| 132-250, gnl|dasNov1|scaffold_10324 (86122-86001) | |
| 132-250, gnl|echTel1|scaffold_221847 (2870-2751) | |
| 132-250, gnl|fr1|chrUn (12288865-12288742) | |
| 132-250, gnl|galGal2|chrUn (157989072-157989195) | |
| 132-250, gnl|hg17|chr8 (99190046-99190169) | |
| 132-250, gnl|Hg17|chr8 (99190167-99190049) | |
| 132-250, gnl|loxAfr1|scaffold_16375 (56494-56616) | |
| 132-250, gnl|mm7|chr15 (34597558-34597681) | |
| 132-250, gnl|Mm7|chr15 (34597679-34597561) | |
| 132-250, gnl|monDom2|scaffold_3 (66486248-66486124) | |
| 132-250, gnl|oryCun1|scaffold_207852 (126090-125969) | |
| 132-250, gnl|panTro1|chr7 (101467100-101467223) | |
| 132-250, gnl|rheMac2|chr8 (100647452-100647575) | |
| 132-250, gnl|rn3|chr7 (69955708-69955831) | |
| 132-250, gnl|tetNig1|chr8 (9689082-9689197) | |
| 420-774, gnl|bosTau2|chr14 (39647274-39647621) | |
| 420-774, gnl|canFam2|chr13 (3349146-3348795) | |
| 420-774, gnl|dasNov1|scaffold_9384 (40405-40087) | |
| 420-774, gnl|echTel1|scaffold_221847 (3046-3421) | |
| 420-774, gnl|hg17|chr15 (55568415-55568770) | |
| 420-774, gnl|Hg17|chr8 (99184320-99183949) | |
| 420-774, gnl|loxAfr1|scaffold_16375 (52816-52464) | |
| 420-774, gnl|Mm7|chr15 (34593535-34593185) | |
| 420-774, gnl|mm7|chrX (19275307-19274999) | |
| 420-774, gnl|monDom2|scaffold_45 (1171196-1171554) | |
| 420-774, gnl|oryCun1|scaffold_150915 (19081-19409) | |
| 420-774, gnl|panTro1|chr16 (55918878-55919233) | |
| 420-774, gnl|rheMac2|chr7 (35823047-35823396) | |
| 420-774, gnl|rn3|chrX (40834426-40834745) | |
| 791-1081, gnl|bosTau2|chr14 (39647611-39647893) | |
| 791-1081, gnl|Hg17|chr8 (99183959-99183675) | |
| 791-1081, gnl|Mm7|chr15 (34593201-34592942) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 132-250, gnl|bosTau2|chr14 (39642095-39642213) | |
| 132-250, gnl|canFam2|chr13 (3353495-3353618) | |
| 132-250, gnl|dasNov1|scaffold_10324 (86122-86001) | |
| 132-250, gnl|echTel1|scaffold_221847 (2870-2751) | |
| 132-250, gnl|fr1|chrUn (12288865-12288742) | |
| 132-250, gnl|galGal2|chrUn (157989072-157989195) | |
| 132-250, gnl|hg17|chr8 (99190046-99190169) | |
| 132-250, gnl|Hg17|chr8 (99190167-99190049) | |
| 132-250, gnl|loxAfr1|scaffold_16375 (56494-56616) | |
| 132-250, gnl|mm7|chr15 (34597558-34597681) | |
| 132-250, gnl|Mm7|chr15 (34597679-34597561) | |
| 132-250, gnl|monDom2|scaffold_3 (66486248-66486124) | |
| 132-250, gnl|oryCun1|scaffold_207852 (126090-125969) | |
| 132-250, gnl|panTro1|chr7 (101467100-101467223) | |
| 132-250, gnl|rheMac2|chr8 (100647452-100647575) | |
| 132-250, gnl|rn3|chr7 (69955708-69955831) | |
| 132-250, gnl|tetNig1|chr8 (9689082-9689197) | |
| 420-774, gnl|bosTau2|chr14 (39647274-39647621) | |
| 420-774, gnl|canFam2|chr13 (3349146-3348795) | |
| 420-774, gnl|dasNov1|scaffold_9384 (40405-40087) | |
| 420-774, gnl|echTel1|scaffold_221847 (3046-3421) | |
| 420-774, gnl|hg17|chr15 (55568415-55568770) | |
| 420-774, gnl|Hg17|chr8 (99184320-99183949) | |
| 420-774, gnl|loxAfr1|scaffold_16375 (52816-52464) | |
| 420-774, gnl|Mm7|chr15 (34593535-34593185) | |
| 420-774, gnl|mm7|chrX (19275307-19274999) | |
| 420-774, gnl|monDom2|scaffold_45 (1171196-1171554) | |
| 420-774, gnl|oryCun1|scaffold_150915 (19081-19409) | |
| 420-774, gnl|panTro1|chr16 (55918878-55919233) | |
| 420-774, gnl|rheMac2|chr7 (35823047-35823396) | |
| 420-774, gnl|rn3|chrX (40834426-40834745) | |
| 791-1081, gnl|bosTau2|chr14 (39647611-39647893) | |
| 791-1081, gnl|Hg17|chr8 (99183959-99183675) | |
| 791-1081, gnl|Mm7|chr15 (34593201-34592942) |
| Expressed library(ies): 40 entry(ies) | More info |
| Expressed library(ies): 40 entry(ies) | Help | Less info |
| kid (3.24338) | |
| lun (1.80587) | |
| tra (1.10783) | |
| sin (0.874738) | |
| cki (0.660939) | |
| fli (0.608643) | |
| liv (0.585137) | |
| cmu (0.55918) | |
| mgm (0.541028) | |
| sto (0.539471) | |
| nco (0.485201) | |
| cbe (0.478469) | |
| fco (0.471624) | |
| lyg (0.399308) | |
| eli (0.303628) | |
| isp (0.300752) | |
| cte (0.29274) | |
| lin (0.291206) | |
| ova (0.258264) | |
| med (0.232504) | |
| spc (0.226732) | |
| tes (0.207814) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| fty (0.17584) | |
| ill (0.175593) | |
| rec (0.17307) | |
| duo (0.172801) | |
| tbr (0.154178) | |
| bfe (0.149858) | |
| fat (0.147427) | |
| spl (0.143184) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| nmm (0.132802) | |
| ret (0.128733) | |
| thg (0.126791) | |
| eru (0.120048) | |
| nbm (0.0993246) | |
| jej (0.0989218) |
| Expressed library(ies): 40 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| kid (3.24338) | |
| lun (1.80587) | |
| tra (1.10783) | |
| sin (0.874738) | |
| cki (0.660939) | |
| fli (0.608643) | |
| liv (0.585137) | |
| cmu (0.55918) | |
| mgm (0.541028) | |
| sto (0.539471) | |
| nco (0.485201) | |
| cbe (0.478469) | |
| fco (0.471624) | |
| lyg (0.399308) | |
| eli (0.303628) | |
| isp (0.300752) | |
| cte (0.29274) | |
| lin (0.291206) | |
| ova (0.258264) | |
| med (0.232504) | |
| spc (0.226732) | |
| tes (0.207814) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| fty (0.17584) | |
| ill (0.175593) | |
| rec (0.17307) | |
| duo (0.172801) | |
| tbr (0.154178) | |
| bfe (0.149858) | |
| fat (0.147427) | |
| spl (0.143184) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| nmm (0.132802) | |
| ret (0.128733) | |
| thg (0.126791) | |
| eru (0.120048) | |
| nbm (0.0993246) | |
| jej (0.0989218) |