Non-Coding RNA Search

Ss1.1-Pig4-TMW8023B01.5

Sequence:


               
               TAAGGTTTACGTGGAAACTGGGGTCATGGCTGCTCCCGGCCCAGCGCTCTGCCTCTTCGA
CGTGGACGGGACTCTGACCGCTCCCAGGCAGAAAATTACCGAAGACATGGATTGCTTTCT
ACAAGAACTGAGGCAGAAGATCAAAATTGGCGTCGTGGGCGGGTCGGACTTTGAGAAAGT
ACAAGAGCAACTGGGAAACGACGTGGTTGAAAAATACGATTACGTGTTTCCAGAAAATGG
CTTGGTAGCATACAAAGATGGGAAACTCGTGTCTAAACAGAATATTCAAGGTCACCTGGG
TGAGGCCCTGATTCAAGATTTAATCAACTACTGTCTGAGCTACATTGCGAAAATTAAGCT
CCCGAAGAAGAGGGGTACCTTCATTGAATTCCGAAACGGGATGTTGAACGTGTCTCCCAT
CGGAAGGAGCTGCAGCCAAGAAGAACGCATTGAGTTCTACGAACTTGACAAAAAAGAAAA
CATCAGACAAAAATTCGTGGAGGATCTGCGGCAAGAGTTTGCAGGGAAAGGCCTCACATT
TTCCATAGGAGGCCAGATCAGCTTTGATGTCTTCCCTGATGGCTGGGACAAGAGGTACTG
CCTGGGGCACGTGGAGAAGGACGGCTATAAGACCATTTATTTCTTTGGAGACAAAACTAT
GCCTCTTTGCATGGCCGTGTCACTTTCTAGCATTCGGGCATAGTCGTCGTCAACGTACCT
GTTTTCCCAGCAGAGGCCCCAGGTGGGGGTGGCATCTTGCCGGTGTGACTCTGGCAGACA
CTCCTGCGTCCTCCTCGGCCCGCCCCTCTGTCGCCGGTTTCCTGGAGATGGGTAACAGTG
CTGCCGTCTCAACCTTAACGAGTTAAGGCGCAGAGCAGGCCCAAGACGAGCTTTAAACTT
CTCACATTTCAGCAATAGACATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAAGGTTTACGTGGAAACTGGGGTCATGGCTGCTCCCGGCCCAGCGCTCTGCCTCTTCGA
CGTGGACGGGACTCTGACCGCTCCCAGGCAGAAAATTACCGAAGACATGGATTGCTTTCT
ACAAGAACTGAGGCAGAAGATCAAAATTGGCGTCGTGGGCGGGTCGGACTTTGAGAAAGT
ACAAGAGCAACTGGGAAACGACGTGGTTGAAAAATACGATTACGTGTTTCCAGAAAATGG
CTTGGTAGCATACAAAGATGGGAAACTCGTGTCTAAACAGAATATTCAAGGTCACCTGGG
TGAGGCCCTGATTCAAGATTTAATCAACTACTGTCTGAGCTACATTGCGAAAATTAAGCT
CCCGAAGAAGAGGGGTACCTTCATTGAATTCCGAAACGGGATGTTGAACGTGTCTCCCAT
CGGAAGGAGCTGCAGCCAAGAAGAACGCATTGAGTTCTACGAACTTGACAAAAAAGAAAA
CATCAGACAAAAATTCGTGGAGGATCTGCGGCAAGAGTTTGCAGGGAAAGGCCTCACATT
TTCCATAGGAGGCCAGATCAGCTTTGATGTCTTCCCTGATGGCTGGGACAAGAGGTACTG
CCTGGGGCACGTGGAGAAGGACGGCTATAAGACCATTTATTTCTTTGGAGACAAAACTAT
GCCTCTTTGCATGGCCGTGTCACTTTCTAGCATTCGGGCATAGTCGTCGTCAACGTACCT
GTTTTCCCAGCAGAGGCCCCAGGTGGGGGTGGCATCTTGCCGGTGTGACTCTGGCAGACA
CTCCTGCGTCCTCCTCGGCCCGCCCCTCTGTCGCCGGTTTCCTGGAGATGGGTAACAGTG
CTGCCGTCTCAACCTTAACGAGTTAAGGCGCAGAGCAGGCCCAAGACGAGCTTTAAACTT
CTCACATTTCAGCAATAGACATTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|12849596|dbj|BAB28409.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|12849596|dbj|BAB28409.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               165-278, + strand, RNAz p=0.852278

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               165-278, + strand, RNAz p=0.852278

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               89-661, gnl|bosTau2|chr21 (11545370-11545943)
               

               
               89-661, gnl|Hg17|chr18 (12182870-12182298)
               

               
               89-661, gnl|Mm7|chr16 (8316376-8325174)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               89-661, gnl|bosTau2|chr21 (11545370-11545943)
               

               
               89-661, gnl|Hg17|chr18 (12182870-12182298)
               

               
               89-661, gnl|Mm7|chr16 (8316376-8325174)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cje (0.165235)
               

               
               eep (0.122564)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cje (0.165235)
               

               
               eep (0.122564)

	89-661, gnl\|bosTau2\|chr21 (11545370-11545943)
	89-661, gnl\|Hg17\|chr18 (12182870-12182298)
	89-661, gnl\|Mm7\|chr16 (8316376-8325174)