Non-Coding RNA Search

Ss1.1-Pig4-TMW8023B08.3

Sequence:


               
               AGCTAATGACATCTCCTGTTTTGCTTTCTAAGGTTGAAAGTTTTCTCTCTATTTCTGAAT
GTGACTTGAAACCTTTCCGAAATATTTTTATATGAGCTTCACTTATTTCATTGCCAAAAG
ATGGGGACTTAAATTTTGTTAACGATGTTTCTTCCCATTAAGAAGTTTCATATTACAGGT
ACCCCTCCTTTCCCAGAGTTTCCTTTGTGCCATTTCACCTTTACAAAAGACCTACATTAG
AACCCGTTTTCCCTAACCAAAAGACATCTGAAGAGGATTGTTTGTACAAAGAAAGGTGAT
TGCTTCTTCAGTCTCTGCCATTGCAGCTTACAAAAGTTTCCACAGGACTATGGGGGAAAA
CCTGTAACTGTCCATCCAACTCTGTTGAGCTCAGCTTCTTGGAATTATTGTTGCCAACTT
TGAAAGTTCGAGGTTTTTTTTTTTCCTTTGAATAGTAGTTTGTCACATTTAAGTATCCTG
TACTCCTGAAACTCCTTTAAAACAACAACAGAAATGCTTCCATAAAATTTATTTTGGAAG
CCTATTAATGGACCTCAGATTTTTTTCCTGGTGTCTTAGTATTCCAGGTAAGGGAAAAAA
CTCAGGCTAGCTTTTGTCTCACAGCGTTAGCTGTATTTTTTTATTTTACTCTTGGAAATA
GAGACTTCTGTTAGGATTTTTAGATTTGGAGAACCTAATTTTACCATTTTACCATTTAAA
CACTAAGACGGTTTGAGAGGATAAGACCTACATAAAGATATTTGAAAGGTTAGTTGTAAA
TCCTAGACGTTGGTGATGGCTGCAATAGCACACTTAGCTCTTACCTAACAGACAAACACT
TACTTTGAAAGGAATGAGATTTTGAAATATTTTTTTCCAAGTAAGGCAGAATGAGTCACA
CACCAATTCGAGTCACTAGTACAACATACGAGACATCCTAGAAAAGCATTTATCAATCTT
TTAAAAATCCACATCTGTAAATATTATATAGTGAAGATTTCTTTCCAGCATCTGACATGG
GGCAGAGCACGTAGGTTTCTTATTATGTCTTTTATTGTTCTGGGTAACTGCATGTGAATA
TGTGCACATGCTGACCAAAATAAAATCAGGGTCTCAGTTGGCAGTTTACTCAGTTTCTGG
ACAGGTAGTCCAAAAAAGATGTTTACCTCTCAGTGCAGCGTGGCTGGCCAAATGCCGTCA
ACATCTCCTCCTGGCTGTCATGGATTAGGAGGCACTGTCCAGCGTTTGCCAGGTGGTAGC
GAAGGGGGGTAGTTTTACGAAGGTTCTGTTTGATGGTGTTTTGCTGGAAATGGCAGTTTG
TTCTAGAAACCACGGTGCAGATGTAAGGATTTGAGAAAACAATCTAACACCAAATAAATG
TGTGGCATCCTTTGGCCTTGTGAATAGAGTCAGGACTGAGTGGCAGAGACACTGTGGTGC
CTGACCCCCTTGTTCACATGTGTGTCTCCTGTCATGGGCATGTCTGGGTGCTCAACTTGT
GGTGAGTGTTAGCCTGGGGTCATGCCCTGACCCTGGGAGTGGACTCCACTGGCTTTTGGT
TCCACAGGGCTTTCTTTTGTCTATACACTCCATATAGGTGATAGAAATCTTAAGTTCTAA
AGCACTTTTGTGACATACTCTCAGTGAAGTGAGAATTTGAAGGATGCTTTGGTTTCTGCT
GTCTCAAACATGTGGCATTTAAAAACAATAAATATTTTTAATGGTTTTTAACTCATAATA
TTTTTGGATTTCTTTGTCACTTTTTACAGTTTTGAAGACCAAACAGCAGATACATTACCA
AGGATGGTTTTGTGTTGTCCAGTAGGTTTCTTAAATTTGACAAAAAACAAACAAAAAACT
CAGTAGAACTTGTGGTAGCCAACAGCTTTGTCTCAACTTTAAGTCAAAATGTGTTATTAG
TAAGAGATTCTAACTATTGTTTTTTACCCTCTGTGAACTAGTATGGTAATAATTTTGAAA
AGGCAAACAAAATTGAGTAACTTTATCTGAAAAGCTTTAAAAGTGGCCTTTCTGTTACAC
GTGTGGCACAGACAGCTGGTAAGTGCAGGGCACTTCTGGTCTTGCTTCCTATGCTTCATG
TCTGATGCTGCCAGAAATAGGGATTCTATATTCAACATACTTAGAGTGGTATGAGCCTTA
GGACTGCACCACAGAGTAAACACAACCTCTATATGGTGGTAAATGTTTGTGTCTTTGTTT
CATTTGTGATTGGAGACAAAGTTGATGTTTTTGTCTCCGTAGTCAGTATCCATCTTTATG
GCTGATTATATAATCTTCTGCTCTACATGGTGAACTGTGCAATAAGACAGGATTGTGTAA
ATATAGTCATCTTTGGAGACCTGAAATTCCCTAGCTTGATTACAGTGGTGATACTCGGTT
GTAAGCTGTACACACCTGTAAGAGAATAATGGGTGGTACTAGAGGGCTTCACAGCAAGCC
AGTCACATTGACCAACACGGCTTCAGTGTAGATGACGTACTGTAGTGGGAGGGCTGTGCA
GTCAAAATGAAGGCGAGACAAGAGATCACATTTAAAGAAAAGGTAAGCACTCAGACTTGA
TTTCTTTTGAAATAATCTTTGTTTTCTCATGTGCTTAAAAATGCATATCAAAGACTTGAA
TAGGCATTCTCCTTAAATTTGAGGATTTTTTGTTTTTAATGCTGTCTTTTTGCCTAATGT
TGAATATTTGCTTGCCTAAATGGCTCCCAAATTGTGGGGGAGTCTCTACGTGTTTCCTTT
TTTTAAGTTTCATTATTAAAAGTGATTAAGCACACAAAACTGTCTTTCTTTGATATTTTG
AGTTTTGTGACTATATGAGCTTAAATGAAATGTTAATGTTTCAGAGTTAACGTGCTTCTT
TCGGTAATTTTGTTTGGAATAAAGTTTTTTTTAAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCTAATGACATCTCCTGTTTTGCTTTCTAAGGTTGAAAGTTTTCTCTCTATTTCTGAAT
GTGACTTGAAACCTTTCCGAAATATTTTTATATGAGCTTCACTTATTTCATTGCCAAAAG
ATGGGGACTTAAATTTTGTTAACGATGTTTCTTCCCATTAAGAAGTTTCATATTACAGGT
ACCCCTCCTTTCCCAGAGTTTCCTTTGTGCCATTTCACCTTTACAAAAGACCTACATTAG
AACCCGTTTTCCCTAACCAAAAGACATCTGAAGAGGATTGTTTGTACAAAGAAAGGTGAT
TGCTTCTTCAGTCTCTGCCATTGCAGCTTACAAAAGTTTCCACAGGACTATGGGGGAAAA
CCTGTAACTGTCCATCCAACTCTGTTGAGCTCAGCTTCTTGGAATTATTGTTGCCAACTT
TGAAAGTTCGAGGTTTTTTTTTTTCCTTTGAATAGTAGTTTGTCACATTTAAGTATCCTG
TACTCCTGAAACTCCTTTAAAACAACAACAGAAATGCTTCCATAAAATTTATTTTGGAAG
CCTATTAATGGACCTCAGATTTTTTTCCTGGTGTCTTAGTATTCCAGGTAAGGGAAAAAA
CTCAGGCTAGCTTTTGTCTCACAGCGTTAGCTGTATTTTTTTATTTTACTCTTGGAAATA
GAGACTTCTGTTAGGATTTTTAGATTTGGAGAACCTAATTTTACCATTTTACCATTTAAA
CACTAAGACGGTTTGAGAGGATAAGACCTACATAAAGATATTTGAAAGGTTAGTTGTAAA
TCCTAGACGTTGGTGATGGCTGCAATAGCACACTTAGCTCTTACCTAACAGACAAACACT
TACTTTGAAAGGAATGAGATTTTGAAATATTTTTTTCCAAGTAAGGCAGAATGAGTCACA
CACCAATTCGAGTCACTAGTACAACATACGAGACATCCTAGAAAAGCATTTATCAATCTT
TTAAAAATCCACATCTGTAAATATTATATAGTGAAGATTTCTTTCCAGCATCTGACATGG
GGCAGAGCACGTAGGTTTCTTATTATGTCTTTTATTGTTCTGGGTAACTGCATGTGAATA
TGTGCACATGCTGACCAAAATAAAATCAGGGTCTCAGTTGGCAGTTTACTCAGTTTCTGG
ACAGGTAGTCCAAAAAAGATGTTTACCTCTCAGTGCAGCGTGGCTGGCCAAATGCCGTCA
ACATCTCCTCCTGGCTGTCATGGATTAGGAGGCACTGTCCAGCGTTTGCCAGGTGGTAGC
GAAGGGGGGTAGTTTTACGAAGGTTCTGTTTGATGGTGTTTTGCTGGAAATGGCAGTTTG
TTCTAGAAACCACGGTGCAGATGTAAGGATTTGAGAAAACAATCTAACACCAAATAAATG
TGTGGCATCCTTTGGCCTTGTGAATAGAGTCAGGACTGAGTGGCAGAGACACTGTGGTGC
CTGACCCCCTTGTTCACATGTGTGTCTCCTGTCATGGGCATGTCTGGGTGCTCAACTTGT
GGTGAGTGTTAGCCTGGGGTCATGCCCTGACCCTGGGAGTGGACTCCACTGGCTTTTGGT
TCCACAGGGCTTTCTTTTGTCTATACACTCCATATAGGTGATAGAAATCTTAAGTTCTAA
AGCACTTTTGTGACATACTCTCAGTGAAGTGAGAATTTGAAGGATGCTTTGGTTTCTGCT
GTCTCAAACATGTGGCATTTAAAAACAATAAATATTTTTAATGGTTTTTAACTCATAATA
TTTTTGGATTTCTTTGTCACTTTTTACAGTTTTGAAGACCAAACAGCAGATACATTACCA
AGGATGGTTTTGTGTTGTCCAGTAGGTTTCTTAAATTTGACAAAAAACAAACAAAAAACT
CAGTAGAACTTGTGGTAGCCAACAGCTTTGTCTCAACTTTAAGTCAAAATGTGTTATTAG
TAAGAGATTCTAACTATTGTTTTTTACCCTCTGTGAACTAGTATGGTAATAATTTTGAAA
AGGCAAACAAAATTGAGTAACTTTATCTGAAAAGCTTTAAAAGTGGCCTTTCTGTTACAC
GTGTGGCACAGACAGCTGGTAAGTGCAGGGCACTTCTGGTCTTGCTTCCTATGCTTCATG
TCTGATGCTGCCAGAAATAGGGATTCTATATTCAACATACTTAGAGTGGTATGAGCCTTA
GGACTGCACCACAGAGTAAACACAACCTCTATATGGTGGTAAATGTTTGTGTCTTTGTTT
CATTTGTGATTGGAGACAAAGTTGATGTTTTTGTCTCCGTAGTCAGTATCCATCTTTATG
GCTGATTATATAATCTTCTGCTCTACATGGTGAACTGTGCAATAAGACAGGATTGTGTAA
ATATAGTCATCTTTGGAGACCTGAAATTCCCTAGCTTGATTACAGTGGTGATACTCGGTT
GTAAGCTGTACACACCTGTAAGAGAATAATGGGTGGTACTAGAGGGCTTCACAGCAAGCC
AGTCACATTGACCAACACGGCTTCAGTGTAGATGACGTACTGTAGTGGGAGGGCTGTGCA
GTCAAAATGAAGGCGAGACAAGAGATCACATTTAAAGAAAAGGTAAGCACTCAGACTTGA
TTTCTTTTGAAATAATCTTTGTTTTCTCATGTGCTTAAAAATGCATATCAAAGACTTGAA
TAGGCATTCTCCTTAAATTTGAGGATTTTTTGTTTTTAATGCTGTCTTTTTGCCTAATGT
TGAATATTTGCTTGCCTAAATGGCTCCCAAATTGTGGGGGAGTCTCTACGTGTTTCCTTT
TTTTAAGTTTCATTATTAAAAGTGATTAAGCACACAAAACTGTCTTTCTTTGATATTTTG
AGTTTTGTGACTATATGAGCTTAAATGAAATGTTAATGTTTCAGAGTTAACGTGCTTCTT
TCGGTAATTTTGTTTGGAATAAAGTTTTTTTTAAGT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               482-592, - strand, RNAz p=0.657806
               

               
               1057-1173, - strand, RNAz p=0.963191

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               482-592, - strand, RNAz p=0.657806
               

               
               1057-1173, - strand, RNAz p=0.963191

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               20-1415, gnl|bosTau2|chr8 (29065215-29063818)
               

               
               20-1415, gnl|Hg17|chr9 (37874915-37873737)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               20-1415, gnl|bosTau2|chr8 (29065215-29063818)
               

               
               20-1415, gnl|Hg17|chr9 (37874915-37873737)

Expressed library(ies): 25 entry(ies)

More info

Expressed library(ies): 25 entry(ies)

Help | Less info


               
               pro (0.512033)
               

               
               ova (0.387397)
               

               
               cbl (0.344392)
               

               
               fce (0.271592)
               

               
               lyg (0.266205)
               

               
               kid (0.259471)
               

               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               cty (0.20816)
               

               
               nbm (0.198649)
               

               
               ldo (0.194005)
               

               
               ill (0.175593)
               

               
               nje (0.16592)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               ste (0.135208)
               

               
               ret (0.128733)
               

               
               ese (0.126502)
               

               
               ebs (0.118301)

Expressed library(ies): 25 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               ova (0.387397)
               

               
               cbl (0.344392)
               

               
               fce (0.271592)
               

               
               lyg (0.266205)
               

               
               kid (0.259471)
               

               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               cty (0.20816)
               

               
               nbm (0.198649)
               

               
               ldo (0.194005)
               

               
               ill (0.175593)
               

               
               nje (0.16592)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               ste (0.135208)
               

               
               ret (0.128733)
               

               
               ese (0.126502)
               

               
               ebs (0.118301)

	482-592, - strand, RNAz p=0.657806
	1057-1173, - strand, RNAz p=0.963191

	20-1415, gnl\|bosTau2\|chr8 (29065215-29063818)
	20-1415, gnl\|Hg17\|chr9 (37874915-37873737)

	pro (0.512033)
	ova (0.387397)
	cbl (0.344392)
	fce (0.271592)
	lyg (0.266205)
	kid (0.259471)
	ece (0.229305)
	mas (0.210305)
	cty (0.20816)
	nbm (0.198649)
	ldo (0.194005)
	ill (0.175593)
	nje (0.16592)
	mga (0.160205)
	tbr (0.154178)
	lun (0.150489)
	fat (0.147427)
	liv (0.146284)
	lin (0.145603)
	lnt (0.142308)
	nca (0.136874)
	ste (0.135208)
	ret (0.128733)
	ese (0.126502)
	ebs (0.118301)