Ss1.1-Pig4-TMW8023B09.3
|
TGGCCCACTGTGGGATACCTGTTGGTCCCCCTGTGCCCAGGACTTGCATTTCCATGAAAG
AAGATGAAGCCAGCAAGCAAGGGCCAGGAGGCCCGAGAGGGAAGGAAAACAGCAACTACA
CATTTTACAGATTTCTGTTTGGTTTAATTCCAGATTCCAAATTCATATATTTGTCTGCTT
TTCCAACCTAGAAATCCATGTCTTAGTGCAGACATTTGTGTCCCAGAAATAGAGGCTTGA
AATGCTATGAAGTCAAAAGAGGAGATATTTCAAGGAAGATAAATCCTCTGGGATAAAGCA
AGTGGGAAACTCTATCAAGAGGTAGCTCCTTTAATTCTCCAGAACCAGAAATAAGTATCT
AATAGTTTTTGTAGAACCTTCTGGAATATATGGGGGAAAAGGGCTATTGTTAAGTGAGCT
TTATCTGATATCCTTCTGAGAATATTGCTAGAGACCTATTGAGAAGTAAATTAAATTCCT
CTCTGATATAAGCTGTTTTCCCATTGCCTAATGTATCAAAAAGGAAGCTTCTGGAATTGT
GTATGGGTAGTCTTATTCCTAGGGGGGAAGTCAAGGATCATAGTACCCCTGAGTCTTTAT
GGAGATGGTTTAAATTATTTTAACTTTATTACAAGTATTAAGAGAGTAGTGGTTCTGCTC
TAAGATTTCATAAGTGCTTTTAAAAATCATAAGTGTTTCTGCCTCCAAATATATTGTTAT
TTTGGTGGAGAAAAAAATAGTATATTCTACATGAGAAATATTAAAGGTATTAATCGAGAG
AAATGTTCTACTTTATTATCTTAACATTCAGATGTTCTGAGATTATTATTTTTTAAAAAT
ATATTTAACCATTGAGGAATCTTTACAGTATATTACAGAGATCTTCATAGAGTCTAAATA
GATGGAAAGGAGCCCTATTGATTCCTAGTCTTAATGAGAATTCTGTGCTTAAAATATGAG
TGCTAGAACCGGAGTTCTTAATTCTGTGTTTGTAATTTTGGAGATTTCATGGAGAATGCT
CAAAAAAATCTAAGAAAAAAAGACCTATAATTATAATTTAAATATATATATATTTATATT
TAAAAGATAGAAATGGCAAAGTTGACCTTACAATTTGACATTTGTCTT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
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TGGCCCACTGTGGGATACCTGTTGGTCCCCCTGTGCCCAGGACTTGCATTTCCATGAAAG
AAGATGAAGCCAGCAAGCAAGGGCCAGGAGGCCCGAGAGGGAAGGAAAACAGCAACTACA
CATTTTACAGATTTCTGTTTGGTTTAATTCCAGATTCCAAATTCATATATTTGTCTGCTT
TTCCAACCTAGAAATCCATGTCTTAGTGCAGACATTTGTGTCCCAGAAATAGAGGCTTGA
AATGCTATGAAGTCAAAAGAGGAGATATTTCAAGGAAGATAAATCCTCTGGGATAAAGCA
AGTGGGAAACTCTATCAAGAGGTAGCTCCTTTAATTCTCCAGAACCAGAAATAAGTATCT
AATAGTTTTTGTAGAACCTTCTGGAATATATGGGGGAAAAGGGCTATTGTTAAGTGAGCT
TTATCTGATATCCTTCTGAGAATATTGCTAGAGACCTATTGAGAAGTAAATTAAATTCCT
CTCTGATATAAGCTGTTTTCCCATTGCCTAATGTATCAAAAAGGAAGCTTCTGGAATTGT
GTATGGGTAGTCTTATTCCTAGGGGGGAAGTCAAGGATCATAGTACCCCTGAGTCTTTAT
GGAGATGGTTTAAATTATTTTAACTTTATTACAAGTATTAAGAGAGTAGTGGTTCTGCTC
TAAGATTTCATAAGTGCTTTTAAAAATCATAAGTGTTTCTGCCTCCAAATATATTGTTAT
TTTGGTGGAGAAAAAAATAGTATATTCTACATGAGAAATATTAAAGGTATTAATCGAGAG
AAATGTTCTACTTTATTATCTTAACATTCAGATGTTCTGAGATTATTATTTTTTAAAAAT
ATATTTAACCATTGAGGAATCTTTACAGTATATTACAGAGATCTTCATAGAGTCTAAATA
GATGGAAAGGAGCCCTATTGATTCCTAGTCTTAATGAGAATTCTGTGCTTAAAATATGAG
TGCTAGAACCGGAGTTCTTAATTCTGTGTTTGTAATTTTGGAGATTTCATGGAGAATGCT
CAAAAAAATCTAAGAAAAAAAGACCTATAATTATAATTTAAATATATATATATTTATATT
TAAAAGATAGAAATGGCAAAGTTGACCTTACAATTTGACATTTGTCTT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1-651, gnl|bosTau2|chr5 (49541651-49540971) |
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1-651, gnl|Mm7|chr6 (148316004-148315393) |
| |
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961-1128, gnl|bosTau2|chr5 (49540919-49540753) |
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961-1128, gnl|canFam2|chr27 (21530740-21530555) |
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961-1128, gnl|dasNov1|scaffold_27041 (45922-45731) |
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961-1128, gnl|echTel1|scaffold_179417 (2799-2986) |
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961-1128, gnl|hg17|chr12 (29549842-29550010) |
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961-1128, gnl|Hg17|chr12 (29550009-29549842) |
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961-1128, gnl|loxAfr1|scaffold_2730 (83689-83509) |
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961-1128, gnl|mm7|chr6 (148314962-148315110) |
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961-1128, gnl|monDom2|scaffold_71 (5856771-5856554) |
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961-1128, gnl|oryCun1|scaffold_182611 (9771-9954) |
|
961-1128, gnl|panTro1|chrUn_random (55997972-55998140) |
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961-1128, gnl|rheMac2|chr11 (29828803-29828971) |
|
961-1128, gnl|rn3|chr4 (186097478-186097627) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-651, gnl|bosTau2|chr5 (49541651-49540971) |
|
1-651, gnl|Mm7|chr6 (148316004-148315393) |
| |
|
961-1128, gnl|bosTau2|chr5 (49540919-49540753) |
|
961-1128, gnl|canFam2|chr27 (21530740-21530555) |
|
961-1128, gnl|dasNov1|scaffold_27041 (45922-45731) |
|
961-1128, gnl|echTel1|scaffold_179417 (2799-2986) |
|
961-1128, gnl|hg17|chr12 (29549842-29550010) |
|
961-1128, gnl|Hg17|chr12 (29550009-29549842) |
|
961-1128, gnl|loxAfr1|scaffold_2730 (83689-83509) |
|
961-1128, gnl|mm7|chr6 (148314962-148315110) |
|
961-1128, gnl|monDom2|scaffold_71 (5856771-5856554) |
|
961-1128, gnl|oryCun1|scaffold_182611 (9771-9954) |
|
961-1128, gnl|panTro1|chrUn_random (55997972-55998140) |
|
961-1128, gnl|rheMac2|chr11 (29828803-29828971) |
|
961-1128, gnl|rn3|chr4 (186097478-186097627) |
|
cte (0.29274) |
|
lnt (0.142308) |
|
tra (0.123092) |
|
pgl (0.118483) |
|
cte (0.29274) |
|
lnt (0.142308) |
|
tra (0.123092) |
|
pgl (0.118483) |
