Ss1.1-Pig4-TMW8023B10.5
|
CCTCCTGTCCTGTCTCAGCATCTGCCAGCAGATCATGAGCCATCAGCTGCTCCGGCTGTA
GGACGACAAAACTCACCAAAGGACCAAGCGCATCGAGCAGCATGGGGCAGTGTCGGTCAG
CCAACGCGGAGGATGCCCAGGAATTCAGTGACGTGGAGAGGGCCATTGAGACCCTGATCA
AGAACTTCCACCAGTATTCGGTGGAGGGTGGGAAGGAGACGCTGACCCCCTCCGAGCTAC
GGGACCTGGTCACCCAGCAGCTGCCCCACCTCATGCCGAGCAACTGCGGGCTGGAAGAGA
AGATTGCCAACCTGGGCAGCTGTAACGACTCTAAACTGGAGTTTGGGAGCTTCTGGGAGC
TGATCGGAGAAGCAGCCAAGAGCGTGAAGCTGGAGAGTCCTGTCCGGGGAAGCTGAACCT
CTTTCCTGGAATTTTGGGGGGATGTTGGGGAAAGGGGACCTTAGAGCCTGTGGGCCCAGA
AATAAAACTCCTCTCTCCCCCACCCCTCCGTGCTTGCCCAGCCCTCCTGCCTCACCCCTG
CAGGGCTCAGGTTCAGAATGGCACTTCCCGGGGCCTCCTCTGTGTACTTTGTCCCTGGGA
GTTCCATGGAGCTCATAGATCCAGGAGTTCCCCACCAGAGGGAGGCTCAGGGGGCGGGTT
GGGGCCAGGGAGGGACGTGGAGGGATGCTCGAGGGTTGAGGATGGTGTAAGGGCCGAGTC
TCTTAGTAGTGGGGGAAGGGCGAGAGGAGCGGAGCCACGGGAAATGATTGGAAGTGGGTG
GGAATAGGGCTGGATATTCGGTACTAATGAGGGTCTCTTAAGAACCTACCTCTCCTCATC
TCTTCCCCGACCCAAACTGGAGCTGTCTGTCGGCGCTGTCCCTCCTGGCCTCCAGCTCTG
CCCCAGCCTCTGCCGGGGCCTCTGTCCTGGCTCAGCACAGGGGAAGAGGGCTAGCAGGGT
CGGGGAGAGGCCGAGGAGGGTGACTTTTGGGAGTGAGAGGACCAGCTGGGTGCTTGGGCA
TTTACAGAATGATGGTCATTTTGTATCCTTTGATTAATAAAAAATGGAAAAAGTGAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CCTCCTGTCCTGTCTCAGCATCTGCCAGCAGATCATGAGCCATCAGCTGCTCCGGCTGTA
GGACGACAAAACTCACCAAAGGACCAAGCGCATCGAGCAGCATGGGGCAGTGTCGGTCAG
CCAACGCGGAGGATGCCCAGGAATTCAGTGACGTGGAGAGGGCCATTGAGACCCTGATCA
AGAACTTCCACCAGTATTCGGTGGAGGGTGGGAAGGAGACGCTGACCCCCTCCGAGCTAC
GGGACCTGGTCACCCAGCAGCTGCCCCACCTCATGCCGAGCAACTGCGGGCTGGAAGAGA
AGATTGCCAACCTGGGCAGCTGTAACGACTCTAAACTGGAGTTTGGGAGCTTCTGGGAGC
TGATCGGAGAAGCAGCCAAGAGCGTGAAGCTGGAGAGTCCTGTCCGGGGAAGCTGAACCT
CTTTCCTGGAATTTTGGGGGGATGTTGGGGAAAGGGGACCTTAGAGCCTGTGGGCCCAGA
AATAAAACTCCTCTCTCCCCCACCCCTCCGTGCTTGCCCAGCCCTCCTGCCTCACCCCTG
CAGGGCTCAGGTTCAGAATGGCACTTCCCGGGGCCTCCTCTGTGTACTTTGTCCCTGGGA
GTTCCATGGAGCTCATAGATCCAGGAGTTCCCCACCAGAGGGAGGCTCAGGGGGCGGGTT
GGGGCCAGGGAGGGACGTGGAGGGATGCTCGAGGGTTGAGGATGGTGTAAGGGCCGAGTC
TCTTAGTAGTGGGGGAAGGGCGAGAGGAGCGGAGCCACGGGAAATGATTGGAAGTGGGTG
GGAATAGGGCTGGATATTCGGTACTAATGAGGGTCTCTTAAGAACCTACCTCTCCTCATC
TCTTCCCCGACCCAAACTGGAGCTGTCTGTCGGCGCTGTCCCTCCTGGCCTCCAGCTCTG
CCCCAGCCTCTGCCGGGGCCTCTGTCCTGGCTCAGCACAGGGGAAGAGGGCTAGCAGGGT
CGGGGAGAGGCCGAGGAGGGTGACTTTTGGGAGTGAGAGGACCAGCTGGGTGCTTGGGCA
TTTACAGAATGATGGTCATTTTGTATCCTTTGATTAATAAAAAATGGAAAAAGTGAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA
|
|
gi|55962774|emb|CAI14759.1| |
Protein identifier
|
gi|55962774|emb|CAI14759.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
27-146, gnl|bosTau2|chr3 (11170753-11170881) |
|
27-146, gnl|canFam2|chr7 (46422133-46421821) |
|
27-146, gnl|dasNov1|scaffold_71460 (3597-3941) |
|
27-146, gnl|echTel1|scaffold_294244 (1788-2094) |
|
27-146, gnl|hg17|chr1 (150401261-150401600) |
|
27-146, gnl|Hg17|chr1 (150401490-150401362) |
|
27-146, gnl|mm7|chr3 (90658144-90657816) |
|
27-146, gnl|Mm7|chr3 (90657906-90658047) |
|
27-146, gnl|monDom2|scaffold_59 (4476433-4476046) |
|
27-146, gnl|oryCun1|scaffold_143611 (930-1192) |
|
27-146, gnl|panTro1|chr1 (132378642-132378981) |
|
27-146, gnl|rn3|chr2 (182750406-182750078) |
| |
|
274-1078, gnl|bosTau2|chr3 (11171667-11172439) |
|
274-1078, gnl|Hg17|chr1 (150400576-150399804) |
|
274-1078, gnl|Mm7|chr3 (90658808-90659572) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
27-146, gnl|bosTau2|chr3 (11170753-11170881) |
|
27-146, gnl|canFam2|chr7 (46422133-46421821) |
|
27-146, gnl|dasNov1|scaffold_71460 (3597-3941) |
|
27-146, gnl|echTel1|scaffold_294244 (1788-2094) |
|
27-146, gnl|hg17|chr1 (150401261-150401600) |
|
27-146, gnl|Hg17|chr1 (150401490-150401362) |
|
27-146, gnl|mm7|chr3 (90658144-90657816) |
|
27-146, gnl|Mm7|chr3 (90657906-90658047) |
|
27-146, gnl|monDom2|scaffold_59 (4476433-4476046) |
|
27-146, gnl|oryCun1|scaffold_143611 (930-1192) |
|
27-146, gnl|panTro1|chr1 (132378642-132378981) |
|
27-146, gnl|rn3|chr2 (182750406-182750078) |
| |
|
274-1078, gnl|bosTau2|chr3 (11171667-11172439) |
|
274-1078, gnl|Hg17|chr1 (150400576-150399804) |
|
274-1078, gnl|Mm7|chr3 (90658808-90659572) |
|
amn (0.417711) |
|
ton (0.351) |
|
mcp (0.341297) |
|
fhi (0.339155) |
|
fce (0.271592) |
|
nmm (0.265604) |
|
eep (0.245128) |
|
eje (0.197668) |
|
col (0.195008) |
|
cmu (0.186393) |
|
nco (0.161734) |
|
cag (0.151194) |
|
hyp (0.142837) |
|
pty (0.142714) |
|
cov (0.132153) |
|
jej (0.0989218) |
|
amn (0.417711) |
|
ton (0.351) |
|
mcp (0.341297) |
|
fhi (0.339155) |
|
fce (0.271592) |
|
nmm (0.265604) |
|
eep (0.245128) |
|
eje (0.197668) |
|
col (0.195008) |
|
cmu (0.186393) |
|
nco (0.161734) |
|
cag (0.151194) |
|
hyp (0.142837) |
|
pty (0.142714) |
|
cov (0.132153) |
|
jej (0.0989218) |
