Non-Coding RNA Search

Ss1.1-Pig4-TMW8023B14.3

Sequence:


               
               CAAGAGCCACAAAATGAAGAACCTGCTGAAATTAAAATCATCAAGGAAGCATACAAGAAG
GCCTTTTTATTTGTTAATAAAGGACTAAATACAGATGAATTAGGTCAGAAGGAAGAAGCA
AAGAACTACTATAGGCAAGGAATAGGACACCTGCTCAGAGGAATCAGCATTTCATCAACA
GATCCTGAGTGTGTAGGTCCCGAGTGGGAATCTGCTAGACAGATGCAGCAGAAAATGAAA
GAGACGCTGCAGAATGTGCGTACCAGGTTGGAAATTCTAGAGAAGGGTCTTGCCACTTCT
CTACGGAACGACCTCCAGGAGGTACCCAAGTTATATCCAGAGTTTCCACCTAAAGACATG
TCAGAAAAATCACCGGAGCCTCAGTCCTTTGGTTCACCTCCTCAGCACAGTGAAGTAAAC
GGAAATGCTTCAGCTGCAAGTACACAGTCAGTTTCTATACCGAATACTTTATCCTTTTCA
TCTCAAAGTCATCCATCAGAAGCACCTCCTGCTTATACTCCTCAGGCTGCTGAGGGTCAC
TACACTGTATCCTATGGAACAGAATCTGGGGAGTTCTCATCAGTAGGGGAGAACTTTTAC
AGGAATCATTCTCAGCCTCCTCCTCTTGAGACCTTAGGGCTAGATGCAGATGAGTTGATT
TTGATACCAAATGGAGTACAGATTTTTTTTGTAAATCCTGCAGGGGAGGTTAGTGCACCT
TCCTATCCTGGTTACCTTCGGATCGTGAGGTTCTTGGATAATTCCCTTGATGCAGTTCTA
AACCGTCCTCCTGGGTTTCTTCAGGTCTGTGACTGGTTGTATCCTCTAGTTCCTGATAGA
TCTCCAGTTCTTAAGTGTACTGTAGGGGCCTACATGTTTCCTGATACTATGTTACAAGCA
TCAGGGTGCTTCGTGGGGGTCGTCTTGTCTTCTGAATTACCGGAAGATGACAGAGAACTC
TTTGAGGATCTGTTAAGACAAATGTCTGACCTTCGGCTCCAGGCCAACTGGGACCGGGCA
GAAGGAGAAAATGAATTCCAAATCCCGGGAAGATCAAGATGTCCCTCTGACCAGTTGAGG
GAAGCCAGTGGCACTGATGTGAGACAGCTGGACCAGGGCAGTAAGGATGTGCGTCATAAG
GGAAAACGAGGCAAAAAAGAAAGTAAAGCCAAAGGTTCTTCCAGTGAGGAAGTTAATCTG
AGTCACATTGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAGAGCCACAAAATGAAGAACCTGCTGAAATTAAAATCATCAAGGAAGCATACAAGAAG
GCCTTTTTATTTGTTAATAAAGGACTAAATACAGATGAATTAGGTCAGAAGGAAGAAGCA
AAGAACTACTATAGGCAAGGAATAGGACACCTGCTCAGAGGAATCAGCATTTCATCAACA
GATCCTGAGTGTGTAGGTCCCGAGTGGGAATCTGCTAGACAGATGCAGCAGAAAATGAAA
GAGACGCTGCAGAATGTGCGTACCAGGTTGGAAATTCTAGAGAAGGGTCTTGCCACTTCT
CTACGGAACGACCTCCAGGAGGTACCCAAGTTATATCCAGAGTTTCCACCTAAAGACATG
TCAGAAAAATCACCGGAGCCTCAGTCCTTTGGTTCACCTCCTCAGCACAGTGAAGTAAAC
GGAAATGCTTCAGCTGCAAGTACACAGTCAGTTTCTATACCGAATACTTTATCCTTTTCA
TCTCAAAGTCATCCATCAGAAGCACCTCCTGCTTATACTCCTCAGGCTGCTGAGGGTCAC
TACACTGTATCCTATGGAACAGAATCTGGGGAGTTCTCATCAGTAGGGGAGAACTTTTAC
AGGAATCATTCTCAGCCTCCTCCTCTTGAGACCTTAGGGCTAGATGCAGATGAGTTGATT
TTGATACCAAATGGAGTACAGATTTTTTTTGTAAATCCTGCAGGGGAGGTTAGTGCACCT
TCCTATCCTGGTTACCTTCGGATCGTGAGGTTCTTGGATAATTCCCTTGATGCAGTTCTA
AACCGTCCTCCTGGGTTTCTTCAGGTCTGTGACTGGTTGTATCCTCTAGTTCCTGATAGA
TCTCCAGTTCTTAAGTGTACTGTAGGGGCCTACATGTTTCCTGATACTATGTTACAAGCA
TCAGGGTGCTTCGTGGGGGTCGTCTTGTCTTCTGAATTACCGGAAGATGACAGAGAACTC
TTTGAGGATCTGTTAAGACAAATGTCTGACCTTCGGCTCCAGGCCAACTGGGACCGGGCA
GAAGGAGAAAATGAATTCCAAATCCCGGGAAGATCAAGATGTCCCTCTGACCAGTTGAGG
GAAGCCAGTGGCACTGATGTGAGACAGCTGGACCAGGGCAGTAAGGATGTGCGTCATAAG
GGAAAACGAGGCAAAAAAGAAAGTAAAGCCAAAGGTTCTTCCAGTGAGGAAGTTAATCTG
AGTCACATTGTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|11493056|emb|CAC17480.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|11493056|emb|CAC17480.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               240-359, - strand, RNAz p=0.814679
               

               
               1001-1108, - strand, RNAz p=0.852687

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               240-359, - strand, RNAz p=0.814679
               

               
               1001-1108, - strand, RNAz p=0.852687

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-806, gnl|bosTau2|chr11 (80162004-80162809)
               

               
               1-806, gnl|Hg17|chr13 (35807961-35807156)
               

               
               1-806, gnl|Mm7|chr3 (55246317-55247122)
               


               
               1001-1168, gnl|bosTau2|chr11 (80168675-80168842)
               

               
               1001-1168, gnl|Hg17|chr13 (35801656-35801489)
               

               
               1001-1168, gnl|Mm7|chr3 (55254078-55254260)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-806, gnl|bosTau2|chr11 (80162004-80162809)
               

               
               1-806, gnl|Hg17|chr13 (35807961-35807156)
               

               
               1-806, gnl|Mm7|chr3 (55246317-55247122)
               


               
               1001-1168, gnl|bosTau2|chr11 (80168675-80168842)
               

               
               1001-1168, gnl|Hg17|chr13 (35801656-35801489)
               

               
               1001-1168, gnl|Mm7|chr3 (55254078-55254260)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               spl (0.143184)
               

               
               eru (0.120048)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)
               

               
               eru (0.120048)

	240-359, - strand, RNAz p=0.814679
	1001-1108, - strand, RNAz p=0.852687

	1-806, gnl\|bosTau2\|chr11 (80162004-80162809)
	1-806, gnl\|Hg17\|chr13 (35807961-35807156)
	1-806, gnl\|Mm7\|chr3 (55246317-55247122)

	1001-1168, gnl\|bosTau2\|chr11 (80168675-80168842)
	1001-1168, gnl\|Hg17\|chr13 (35801656-35801489)
	1001-1168, gnl\|Mm7\|chr3 (55254078-55254260)