Non-Coding RNA Search

Ss1.1-Pig4-TMW8023B15.3

Sequence:


               
               AATTAAAAGAAGAGGAGGAAAGAGAAATAATCAAACTGACCATGAAGTTCCAAGCCCTGC
GTCTGACCATGCTCCAGCGCCTGGAGCAGCTGGTAGAAGCCAAGTAGCCCACCAGCGCCA
GCCTCTCCCAGGAGCCAGTGCACCCTAAGTGCTGATGGCTGGGCCCTGATTGGTCACACC
AGCTGAGGAGTGCAGCACCAGTGCTTCTACCTGTCCACCTGCCTGGGTACTGTGGGGCCC
ATGTTCCTGGCTCTTGGCCCCAAGGTGAACACTCACAGGGCCCAGACTCAAGCCTGAGGA
GCCAGGAACTTGCTGGGTGGGGTCTGCATGTGAGACTACCCTGAGCTGTGAGCAGCCCTG
AAGCTGTGACATGGGCCATTATGTAGTTGGATGGCCTGGCCAGTCCTGTTCACGCCACAC
CTCTCCTGTTTAGGAGAACAGAATGTGACATAGCTTCTGGGGATGGAGCTTCTGGGCACC
ATCTACTTTCTCAGTGCCCAGCCCAGGGCTTCTGAAGAACTGCCAGCCCTAATCCTCACC
AAGCATGTGAACCACTGGACCCCTGTTTGCCCTCACCTCATGCTGCCACTCAGAAACTCT
GCTGGGAAAAGAGAGGGCTGCCAGCAGGTGTGGTGTGCAATGCTCCCAACCATCACTTCA
CCAGGAATACCTGGCCCTCAAGCCTCCAGTGTCACTCCATGAGCCTCACATAGCCCAGCA
CCCTGGAGGCAGAGGTCAGACCAGGAATAAGGCCACCAGAAGCCCATCTTCTGTCTGCAG
CACTCACTCAGAACTTCCTCAGCTAGACCTGAAGAAATTCTTGTGAGGAGCTAGCTGCAA
GAAATGTGACAATTTGAACACATGGAGGAGGTGACTCCTATGGCACTGAAAGGCTGCTGC
CCAGGTAGCTGAGAGTCCAGGAACTGTCCAGGAACTCTTGGGCAGTGGCTTGGGGAAGCC
ATGTTCGGCCCCATCGCTGATCTCCCTTAGACACCTGTGTGCCTCTTGTCCTCTCTGAGT
GTGAATTGTCCCCTCTCAATACTCCCATCAAAGAGGTGCCTCAAGGAAAAATGTCTGTTC
AAGGAGAAAGGGCTTTGAAATCCCTGGGGCCAGATACTGAACAATTTGGCTTTGCCAGCT
GATGGAGAATTTCTGGAATGAATGATTTGGTCTTTGCAAAATTATGCAACAGTTTATATC
AGTCATGTGAAGTGTTTATCCAAAACAGAGCAAGCTGGAGACCAAATTCTCCCACTGGGA
CCTGTGAATAGTGAATTTAAAGGGGAAAACTGTAAGGTCCCCAATATAGGGGAGATTCCA
TCCCAGCCTCCTGGGACATCTCCTCACCAGCACCCTCAGAGAGCAGAGCTTGGGAGCAGC
TGTGCCATTTGAACCCACAGTTCAGGGTGAATTTCACACCATGACTGTCCCAACTGTCTT
CACAGAGGCATGTGCAGAGATGGCCAGGGGAGGCCCCCCACAGTTTCTGTCTTCTCTGCT
CTCCTTTGGAGGCATAGTTTCTTAGGTACTCAATAAAATTGTGCTGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATTAAAAGAAGAGGAGGAAAGAGAAATAATCAAACTGACCATGAAGTTCCAAGCCCTGC
GTCTGACCATGCTCCAGCGCCTGGAGCAGCTGGTAGAAGCCAAGTAGCCCACCAGCGCCA
GCCTCTCCCAGGAGCCAGTGCACCCTAAGTGCTGATGGCTGGGCCCTGATTGGTCACACC
AGCTGAGGAGTGCAGCACCAGTGCTTCTACCTGTCCACCTGCCTGGGTACTGTGGGGCCC
ATGTTCCTGGCTCTTGGCCCCAAGGTGAACACTCACAGGGCCCAGACTCAAGCCTGAGGA
GCCAGGAACTTGCTGGGTGGGGTCTGCATGTGAGACTACCCTGAGCTGTGAGCAGCCCTG
AAGCTGTGACATGGGCCATTATGTAGTTGGATGGCCTGGCCAGTCCTGTTCACGCCACAC
CTCTCCTGTTTAGGAGAACAGAATGTGACATAGCTTCTGGGGATGGAGCTTCTGGGCACC
ATCTACTTTCTCAGTGCCCAGCCCAGGGCTTCTGAAGAACTGCCAGCCCTAATCCTCACC
AAGCATGTGAACCACTGGACCCCTGTTTGCCCTCACCTCATGCTGCCACTCAGAAACTCT
GCTGGGAAAAGAGAGGGCTGCCAGCAGGTGTGGTGTGCAATGCTCCCAACCATCACTTCA
CCAGGAATACCTGGCCCTCAAGCCTCCAGTGTCACTCCATGAGCCTCACATAGCCCAGCA
CCCTGGAGGCAGAGGTCAGACCAGGAATAAGGCCACCAGAAGCCCATCTTCTGTCTGCAG
CACTCACTCAGAACTTCCTCAGCTAGACCTGAAGAAATTCTTGTGAGGAGCTAGCTGCAA
GAAATGTGACAATTTGAACACATGGAGGAGGTGACTCCTATGGCACTGAAAGGCTGCTGC
CCAGGTAGCTGAGAGTCCAGGAACTGTCCAGGAACTCTTGGGCAGTGGCTTGGGGAAGCC
ATGTTCGGCCCCATCGCTGATCTCCCTTAGACACCTGTGTGCCTCTTGTCCTCTCTGAGT
GTGAATTGTCCCCTCTCAATACTCCCATCAAAGAGGTGCCTCAAGGAAAAATGTCTGTTC
AAGGAGAAAGGGCTTTGAAATCCCTGGGGCCAGATACTGAACAATTTGGCTTTGCCAGCT
GATGGAGAATTTCTGGAATGAATGATTTGGTCTTTGCAAAATTATGCAACAGTTTATATC
AGTCATGTGAAGTGTTTATCCAAAACAGAGCAAGCTGGAGACCAAATTCTCCCACTGGGA
CCTGTGAATAGTGAATTTAAAGGGGAAAACTGTAAGGTCCCCAATATAGGGGAGATTCCA
TCCCAGCCTCCTGGGACATCTCCTCACCAGCACCCTCAGAGAGCAGAGCTTGGGAGCAGC
TGTGCCATTTGAACCCACAGTTCAGGGTGAATTTCACACCATGACTGTCCCAACTGTCTT
CACAGAGGCATGTGCAGAGATGGCCAGGGGAGGCCCCCCACAGTTTCTGTCTTCTCTGCT
CTCCTTTGGAGGCATAGTTTCTTAGGTACTCAATAAAATTGTGCTGTA

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               86-179, - strand, RNAz p=0.692091
               

               
               300-414, - strand, RNAz p=0.970606
               

               
               1327-1439, - strand, RNAz p=0.615585

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               86-179, - strand, RNAz p=0.692091
               

               
               300-414, - strand, RNAz p=0.970606
               

               
               1327-1439, - strand, RNAz p=0.615585

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               87-240, - strand, RNAmicro p=0.999965

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               87-240, - strand, RNAmicro p=0.999965

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               47-1542, gnl|bosTau2|chr28 (33197755-33199268)
               

               
               47-1542, gnl|Hg17|chr10 (44808723-44810151)
               

               
               47-1542, gnl|Mm7|chr6 (116664632-116663240)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               47-1542, gnl|bosTau2|chr28 (33197755-33199268)
               

               
               47-1542, gnl|Hg17|chr10 (44808723-44810151)
               

               
               47-1542, gnl|Mm7|chr6 (116664632-116663240)

Expressed library(ies): 17 entry(ies)

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Expressed library(ies): 17 entry(ies)

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               fce (0.543183)
               

               
               fhi (0.339155)
               

               
               nco (0.323468)
               

               
               cga (0.279096)
               

               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               fty (0.17584)
               

               
               mcp (0.170648)
               

               
               spl (0.143184)
               

               
               hlv (0.139256)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               spc (0.113366)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.543183)
               

               
               fhi (0.339155)
               

               
               nco (0.323468)
               

               
               cga (0.279096)
               

               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               fty (0.17584)
               

               
               mcp (0.170648)
               

               
               spl (0.143184)
               

               
               hlv (0.139256)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               spc (0.113366)

	86-179, - strand, RNAz p=0.692091
	300-414, - strand, RNAz p=0.970606
	1327-1439, - strand, RNAz p=0.615585

	47-1542, gnl\|bosTau2\|chr28 (33197755-33199268)
	47-1542, gnl\|Hg17\|chr10 (44808723-44810151)
	47-1542, gnl\|Mm7\|chr6 (116664632-116663240)

	fce (0.543183)
	fhi (0.339155)
	nco (0.323468)
	cga (0.279096)
	ece (0.229305)
	fcc (0.197785)
	col (0.195008)
	fty (0.17584)
	mcp (0.170648)
	spl (0.143184)
	hlv (0.139256)
	ese (0.126502)
	eep (0.122564)
	cly (0.120642)
	eru (0.120048)
	clu (0.119646)
	spc (0.113366)