Non-Coding RNA Search

Ss1.1-Pig4-TMW8023B22.3

Sequence:


               
               GTGGTCTGTGAGGGAGTCTGTGCTAAATTCCTATTTTCAGGGGAGGGGAGGGTTTCTCTT
TGAATTTCAAAATGTTTAAAGTTTCTATCTAAGAGTATGTCTGCATATTTGCCACTCTAC
CAATTTTAAAAATACGGTATAATTCCTTCTGTTTTAATGACAGAGCTATAAGAAACAAAC
AAAAAAAGCCCTCAGCTGGTGTCTATGCTACCATTCCAAGAGCACAATATTAGTATTGGT
AGAGTTTGATTTTTGCTAGTAAGTACATTCCTCCCTGAGGAAAAATTAGCACTTTAGAAG
GTATATGCTGTGTTTTAGACTGTCGAGGTATCTTTGTATACTCTTAGACTCTGCTAATGC
ACACAGAAAGAGGTTAATGCTCTTTCTCTAGTGCCTAACTTCAGATGGATCTAAAATGGA
AAGAAGAGAATATAGATTATATATAAATATATATTGGAGAGCCAGATTTCTTCAGAGATG
GATCTTAAAGACAAGACTCAAAATGAATGGATGATGCTTCTTTACTCTGGGTACTGATCA
TGCTATCCAGAGGCAATACAGATGTCCCAACAGTATTGTAAGGCGGCTCTAAGCACAGGA
GGTGCAGAGGCGAAAGAACAACATTAGCAAAACACAATTTTGATATCACATTATGAAGTG
CAAAAATCAAGACCATAATGGGGTCTTTTTTTTTTTCAAATCTTAAAATATGTACATAGG
ATGACCAGTTCTGATAGTTGGTCATGGTGCATGAGGTGTTTATTAGTATCCTTTAATGCT
GCCTAGGTTCGACTTAGGGAATGAAATGTGTATCATATATTTACCTGATAGTTCAGTTTT
GCAAAAGGACTATAGAAATAGGTAAATAGCATTTATTTATTAGGGGCAAAAATACACTTT
CACCTCACTAAGCTGATCTAAAAATAATACCTGATTCTTATTTTTGAATTTATACCATTT
TACACACTTTTAAGTTATACTGGAAAAAAACTGTCATATTGTAATTGTGACAAATTACAT
TTGCAAAAAAAAAAAAAAATGCAATATACCAGATGCTCCGAGGATGAAATATACAAGGAA
GAAATTCAAAATACATTCAGAAAATAGGAAAATAAGCTACCTAAAATTTCTTAGATCCAA
AATAAATAGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGGTCTGTGAGGGAGTCTGTGCTAAATTCCTATTTTCAGGGGAGGGGAGGGTTTCTCTT
TGAATTTCAAAATGTTTAAAGTTTCTATCTAAGAGTATGTCTGCATATTTGCCACTCTAC
CAATTTTAAAAATACGGTATAATTCCTTCTGTTTTAATGACAGAGCTATAAGAAACAAAC
AAAAAAAGCCCTCAGCTGGTGTCTATGCTACCATTCCAAGAGCACAATATTAGTATTGGT
AGAGTTTGATTTTTGCTAGTAAGTACATTCCTCCCTGAGGAAAAATTAGCACTTTAGAAG
GTATATGCTGTGTTTTAGACTGTCGAGGTATCTTTGTATACTCTTAGACTCTGCTAATGC
ACACAGAAAGAGGTTAATGCTCTTTCTCTAGTGCCTAACTTCAGATGGATCTAAAATGGA
AAGAAGAGAATATAGATTATATATAAATATATATTGGAGAGCCAGATTTCTTCAGAGATG
GATCTTAAAGACAAGACTCAAAATGAATGGATGATGCTTCTTTACTCTGGGTACTGATCA
TGCTATCCAGAGGCAATACAGATGTCCCAACAGTATTGTAAGGCGGCTCTAAGCACAGGA
GGTGCAGAGGCGAAAGAACAACATTAGCAAAACACAATTTTGATATCACATTATGAAGTG
CAAAAATCAAGACCATAATGGGGTCTTTTTTTTTTTCAAATCTTAAAATATGTACATAGG
ATGACCAGTTCTGATAGTTGGTCATGGTGCATGAGGTGTTTATTAGTATCCTTTAATGCT
GCCTAGGTTCGACTTAGGGAATGAAATGTGTATCATATATTTACCTGATAGTTCAGTTTT
GCAAAAGGACTATAGAAATAGGTAAATAGCATTTATTTATTAGGGGCAAAAATACACTTT
CACCTCACTAAGCTGATCTAAAAATAATACCTGATTCTTATTTTTGAATTTATACCATTT
TACACACTTTTAAGTTATACTGGAAAAAAACTGTCATATTGTAATTGTGACAAATTACAT
TTGCAAAAAAAAAAAAAAATGCAATATACCAGATGCTCCGAGGATGAAATATACAAGGAA
GAAATTCAAAATACATTCAGAAAATAGGAAAATAAGCTACCTAAAATTTCTTAGATCCAA
AATAAATAGAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               357-460, - strand, RNAz p=0.587088
               

               
               771-889, + strand, RNAz p=0.789825

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               357-460, - strand, RNAz p=0.587088
               

               
               771-889, + strand, RNAz p=0.789825

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               7-1131, gnl|bosTau2|chr9 (50950754-50949618)
               

               
               7-1131, gnl|Hg17|chr6 (153422221-153421141)
               

               
               7-1131, gnl|Mm7|chr10 (4516545-4517602)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-1131, gnl|bosTau2|chr9 (50950754-50949618)
               

               
               7-1131, gnl|Hg17|chr6 (153422221-153421141)
               

               
               7-1131, gnl|Mm7|chr10 (4516545-4517602)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               lin (0.145603)
               

               
               ebs (0.118301)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.145603)
               

               
               ebs (0.118301)

	357-460, - strand, RNAz p=0.587088
	771-889, + strand, RNAz p=0.789825

	7-1131, gnl\|bosTau2\|chr9 (50950754-50949618)
	7-1131, gnl\|Hg17\|chr6 (153422221-153421141)
	7-1131, gnl\|Mm7\|chr10 (4516545-4517602)