Non-Coding RNA Search

Ss1.1-Pig4-TMW8023C05.3

Sequence:


               
               GACAGGAAAGGGTTGCCCTAAGGAAGATCCTTTTGAGTCAGACAATATGTCAAGTTGACT
GTCAAGGCCAAGAGAAGAAATACAGGGTTTCCACTCTACTCAGGGTTGAGCCCATCTGGA
GTGTTCGTTGGGTTCAATGGGACCACATTTGAAGAGATCTACCGATCAACATAAGCACAC
TCAGAAAAGAGTAAAAGATAGACAAAACACCTGAAATTCATGTTGCTGAAGGAACAGATG
AAGGAAATTGCAATCTTTGTCCTGAAAAAGAGAAGATTCATGGAAGACGAGAGGATAGCC
TGGATTACCTAAGGAAACAACTATACTCTATAGCTTTAAAATCAGAACTAGAATCGTTCA
ATATTTTTGTTCAGCAACAAATGCAGATCCGGGTGCCTGAGAGCCTACTCTGTGCCTTAT
GCTGTTGGAAGCACTGGATGGAATTTACAGGAGGGGGACTTTGGTTTCAGTAGAGGAAAG
GGCAGTTGGAGCTTTCTTATTGACTAGATGGCTTTGTGAAACTCCCTGTCACTGTCACCG
AGACTCCAAACAGCTTGGCTTGGCTATCTGGCAGAGCATACTTAAGAAGGAAGAGCTAAA
TCAGATGAGAGATGCAGGCAGTGGGCCCCCAGAGTTCTGCTCATGTTTTAGGTAGATGTG
AGCTGAACTTCCTGCCACCAGGAATGCAAACAACAGGAACAGTTGAATCTTATCTGTTTA
ATATGAGACTTAGCATCAAAGGGACTCAACAGCTGCTTGAAGCCAAGAACTCTTCAGCAA
TAGTTACTGCCAGCCAAAAATCACCTGACTTTACTTAGCATATTGAAAATTGATTAAAGG
TTATGAAAACTGTAAAAAAAAAATTGTACCAAGTTCTATAAGCAACAAATACTTCACTTC
AGATTAAAAGATGAGAAGCCAAATACTCCCATGGGATCATACATCAAGGGGTAAAATTTC
AGAACTTGACCAGGAAGATATATAATACTTTACAAAAAGGAAGAGAGAAAAATAAAGTTT
GGATTCTGTTTAGTAGAATTCCATCCATGTGCAGCTTAGACAAATTTATGTTTCTCTTAT
ATTTTAATAATCTATTCTCTTGAAAAAGTTACACAGTTAAAGGAAGATAAGATATTGACA
ATAGACTGTTGCCTTTTGCCAAAATCCAAATTTTATGAAGTGCCTACCTTTAGGTGTTAA
AGTTTTTAATAAATAATTCTAATATGCCATACTTTGCAGCAAGTGACCTTAACATTTCTG
GTTTTTATGTGGATCTTTTCATGTGTTCAAAATTGTACATTGAGAAAATATTGGGAATAG
ATTATCAAACTGGTGTGTCACTTTGCAATTAAATCTAAAATGTTCGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACAGGAAAGGGTTGCCCTAAGGAAGATCCTTTTGAGTCAGACAATATGTCAAGTTGACT
GTCAAGGCCAAGAGAAGAAATACAGGGTTTCCACTCTACTCAGGGTTGAGCCCATCTGGA
GTGTTCGTTGGGTTCAATGGGACCACATTTGAAGAGATCTACCGATCAACATAAGCACAC
TCAGAAAAGAGTAAAAGATAGACAAAACACCTGAAATTCATGTTGCTGAAGGAACAGATG
AAGGAAATTGCAATCTTTGTCCTGAAAAAGAGAAGATTCATGGAAGACGAGAGGATAGCC
TGGATTACCTAAGGAAACAACTATACTCTATAGCTTTAAAATCAGAACTAGAATCGTTCA
ATATTTTTGTTCAGCAACAAATGCAGATCCGGGTGCCTGAGAGCCTACTCTGTGCCTTAT
GCTGTTGGAAGCACTGGATGGAATTTACAGGAGGGGGACTTTGGTTTCAGTAGAGGAAAG
GGCAGTTGGAGCTTTCTTATTGACTAGATGGCTTTGTGAAACTCCCTGTCACTGTCACCG
AGACTCCAAACAGCTTGGCTTGGCTATCTGGCAGAGCATACTTAAGAAGGAAGAGCTAAA
TCAGATGAGAGATGCAGGCAGTGGGCCCCCAGAGTTCTGCTCATGTTTTAGGTAGATGTG
AGCTGAACTTCCTGCCACCAGGAATGCAAACAACAGGAACAGTTGAATCTTATCTGTTTA
ATATGAGACTTAGCATCAAAGGGACTCAACAGCTGCTTGAAGCCAAGAACTCTTCAGCAA
TAGTTACTGCCAGCCAAAAATCACCTGACTTTACTTAGCATATTGAAAATTGATTAAAGG
TTATGAAAACTGTAAAAAAAAAATTGTACCAAGTTCTATAAGCAACAAATACTTCACTTC
AGATTAAAAGATGAGAAGCCAAATACTCCCATGGGATCATACATCAAGGGGTAAAATTTC
AGAACTTGACCAGGAAGATATATAATACTTTACAAAAAGGAAGAGAGAAAAATAAAGTTT
GGATTCTGTTTAGTAGAATTCCATCCATGTGCAGCTTAGACAAATTTATGTTTCTCTTAT
ATTTTAATAATCTATTCTCTTGAAAAAGTTACACAGTTAAAGGAAGATAAGATATTGACA
ATAGACTGTTGCCTTTTGCCAAAATCCAAATTTTATGAAGTGCCTACCTTTAGGTGTTAA
AGTTTTTAATAAATAATTCTAATATGCCATACTTTGCAGCAAGTGACCTTAACATTTCTG
GTTTTTATGTGGATCTTTTCATGTGTTCAAAATTGTACATTGAGAAAATATTGGGAATAG
ATTATCAAACTGGTGTGTCACTTTGCAATTAAATCTAAAATGTTCGAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               181-1364, gnl|bosTau2|chr1 (5404230-5403079)
               

               
               181-1364, gnl|Hg17|chr21 (26762421-26761324)
               

               
               181-1364, gnl|Mm7|chr16 (85453206-85449658)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               181-1364, gnl|bosTau2|chr1 (5404230-5403079)
               

               
               181-1364, gnl|Hg17|chr21 (26762421-26761324)
               

               
               181-1364, gnl|Mm7|chr16 (85453206-85449658)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               tbr (0.154178)
               

               
               liv (0.146284)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (0.154178)
               

               
               liv (0.146284)

	181-1364, gnl\|bosTau2\|chr1 (5404230-5403079)
	181-1364, gnl\|Hg17\|chr21 (26762421-26761324)
	181-1364, gnl\|Mm7\|chr16 (85453206-85449658)