Non-Coding RNA Search

Ss1.1-Pig4-TMW8023C09.3

Sequence:


               
               ATGTTGGGTGGGCTCCTGCCGGATACTTCGTGGCTGTTGTCATCCTGTGTGCTCTTTTTT
ACAGCCTCCTGGTTGTCATGTTGACCATGTCTCGGTTGATTTGTGCAATGGCAGAGGATG
GGCTCCTTTTCCGGGGACTTGGCAAAATCTACGCCCGAAGAGGCACCCCCATCGTGGCCA
TCCTGGTTTCTGCAATTCTTTCAGGGATCATGGCAGTACTTTTCGAGATCCATCATCTTG
TGGAACTCCTGTCAGTTGGGGTCTTGCTTGCTTACTTCCTAGTGGCTTTTTCTGTCCTGG
TCCTCAGGTACCAGCCAGACCAGAGCTTCAGCAAGAAGGAGAAAGTAGAGGAGGAAACTG
AGATGGAGCCTATAGTTGAAGGAAATCCTTCACCATCTGTACCTGAAGCAGGAACCTCAA
ACCCTCTAAAGAGTCTGTGTAACCCTATCAGCACCACCCCGACTCTGAAATCTGGCCAGA
TTGTCTATGGATGTGCCTTCCTGCTGGTTCTCCTGCTGACCATCCTGAGCCTGCTTCTGG
CCCTGTGGCCCAGCCGCGTGTTTTCTGGAGACCCCGGGTTCACAGCAGGGGCTGTGCTGC
TGCTGCTGCTCATTATGTGGATCACTGTCATCATTTGGAGGCAGCCCCAGAACCCCTCTC
CTCTTCACTTTAGGGTACTTTCTTTGCCTGTCTTCCCACTGATCAGCATCTTTGTGAACA
TTTACTTGATAATACAGATGACTACTGGGACTTGGGCCCAATTTGGCATCTGGAATGCTG
TTGGATTTGCCATATACTTTGGATATGGGATCCGACACAGCTTGGAGGAGAAGAGTGATC
AAAACCCACCAGCTTCCAACTTCCATACTTTTGATGAACACACCTCTAGTGCTAAATCCT
GTTAACTCCAGCAAATAGATGCTGTGTGGTCCTCTCCAAAAGGGGAAATGTATTCTGGTT
CAAGGGACTTTTTGAGCCTCTATGGAGTGTGACATTGGGATACATGTAGAGCCTTCTATT
TATTGCCACTGGACAGGATGACTTTTATGTATAATTTAAAGTAAACTTTTAAAAGTATAA
CATGCCTACAGAAATGTGTATGCTTCATAAGTGTGCTCGCAAGATGAATTTTCACAATTA
AGTACTACAATGTAACCAACAACAGAGGAAGAAATGAACTGTTACCTTGCACATAAGAAG
CACTTCTTGGAGTCCCCGTCGTGGCTCAGCCAAAATGACTCTGACTAGTATCCATGAGGA
CGCAGGTTCGATCCCTGGTCTCACTCACTGGGTTAAGGATTGGCTTTGGCTGTGGTGTAG
GCTGGCAGCTGCGGCTCTGATTTAACCTACAGTGTGGGAACTTCCACATGCCATGGGTGA
GGCGCTAAAAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGTTGGGTGGGCTCCTGCCGGATACTTCGTGGCTGTTGTCATCCTGTGTGCTCTTTTTT
ACAGCCTCCTGGTTGTCATGTTGACCATGTCTCGGTTGATTTGTGCAATGGCAGAGGATG
GGCTCCTTTTCCGGGGACTTGGCAAAATCTACGCCCGAAGAGGCACCCCCATCGTGGCCA
TCCTGGTTTCTGCAATTCTTTCAGGGATCATGGCAGTACTTTTCGAGATCCATCATCTTG
TGGAACTCCTGTCAGTTGGGGTCTTGCTTGCTTACTTCCTAGTGGCTTTTTCTGTCCTGG
TCCTCAGGTACCAGCCAGACCAGAGCTTCAGCAAGAAGGAGAAAGTAGAGGAGGAAACTG
AGATGGAGCCTATAGTTGAAGGAAATCCTTCACCATCTGTACCTGAAGCAGGAACCTCAA
ACCCTCTAAAGAGTCTGTGTAACCCTATCAGCACCACCCCGACTCTGAAATCTGGCCAGA
TTGTCTATGGATGTGCCTTCCTGCTGGTTCTCCTGCTGACCATCCTGAGCCTGCTTCTGG
CCCTGTGGCCCAGCCGCGTGTTTTCTGGAGACCCCGGGTTCACAGCAGGGGCTGTGCTGC
TGCTGCTGCTCATTATGTGGATCACTGTCATCATTTGGAGGCAGCCCCAGAACCCCTCTC
CTCTTCACTTTAGGGTACTTTCTTTGCCTGTCTTCCCACTGATCAGCATCTTTGTGAACA
TTTACTTGATAATACAGATGACTACTGGGACTTGGGCCCAATTTGGCATCTGGAATGCTG
TTGGATTTGCCATATACTTTGGATATGGGATCCGACACAGCTTGGAGGAGAAGAGTGATC
AAAACCCACCAGCTTCCAACTTCCATACTTTTGATGAACACACCTCTAGTGCTAAATCCT
GTTAACTCCAGCAAATAGATGCTGTGTGGTCCTCTCCAAAAGGGGAAATGTATTCTGGTT
CAAGGGACTTTTTGAGCCTCTATGGAGTGTGACATTGGGATACATGTAGAGCCTTCTATT
TATTGCCACTGGACAGGATGACTTTTATGTATAATTTAAAGTAAACTTTTAAAAGTATAA
CATGCCTACAGAAATGTGTATGCTTCATAAGTGTGCTCGCAAGATGAATTTTCACAATTA
AGTACTACAATGTAACCAACAACAGAGGAAGAAATGAACTGTTACCTTGCACATAAGAAG
CACTTCTTGGAGTCCCCGTCGTGGCTCAGCCAAAATGACTCTGACTAGTATCCATGAGGA
CGCAGGTTCGATCCCTGGTCTCACTCACTGGGTTAAGGATTGGCTTTGGCTGTGGTGTAG
GCTGGCAGCTGCGGCTCTGATTTAACCTACAGTGTGGGAACTTCCACATGCCATGGGTGA
GGCGCTAAAAAG

Aligned organism(s): 7 entry(ies)

More info

Aligned organism(s): 7 entry(ies)

Help | Less info


               
               304-505, gnl|bosTau2|chr3 (68658874-68659074)
               

               
               304-505, gnl|Hg17|chr19 (58798618-58798420)
               

               
               304-505, gnl|Mm7|chrUn_random (1720996-1721209)
               


               
               507-677, gnl|bosTau2|chr3 (68659271-68659441)
               

               
               507-677, gnl|Hg17|chr19 (58797230-58797060)
               

               
               507-677, gnl|Mm7|chrUn_random (1721357-1721527)
               


               
               783-1108, gnl|bosTau2|chr3 (68728374-68728699)

Aligned organism(s): 7 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               304-505, gnl|bosTau2|chr3 (68658874-68659074)
               

               
               304-505, gnl|Hg17|chr19 (58798618-58798420)
               

               
               304-505, gnl|Mm7|chrUn_random (1720996-1721209)
               


               
               507-677, gnl|bosTau2|chr3 (68659271-68659441)
               

               
               507-677, gnl|Hg17|chr19 (58797230-58797060)
               

               
               507-677, gnl|Mm7|chrUn_random (1721357-1721527)
               


               
               783-1108, gnl|bosTau2|chr3 (68728374-68728699)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

Help | Less info


               
               rec (0.17307)
               

               
               lun (0.150489)
               

               
               spl (0.143184)
               

               
               pla (0.133672)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.17307)
               

               
               lun (0.150489)
               

               
               spl (0.143184)
               

               
               pla (0.133672)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

	304-505, gnl\|bosTau2\|chr3 (68658874-68659074)
	304-505, gnl\|Hg17\|chr19 (58798618-58798420)
	304-505, gnl\|Mm7\|chrUn_random (1720996-1721209)

	507-677, gnl\|bosTau2\|chr3 (68659271-68659441)
	507-677, gnl\|Hg17\|chr19 (58797230-58797060)
	507-677, gnl\|Mm7\|chrUn_random (1721357-1721527)

	783-1108, gnl\|bosTau2\|chr3 (68728374-68728699)

	rec (0.17307)
	lun (0.150489)
	spl (0.143184)
	pla (0.133672)
	thg (0.126791)
	tra (0.123092)
	cty (0.10408)
	jej (0.0989218)