Non-Coding RNA Search

Ss1.1-Pig4-TMW8023C10.5

Sequence:


               
               AAGACACACCTGCTCTCGGCACCATGGAGTTCGACCTGTCGGCAGCCGTGGAGTCCCCCT
CCAAAAAGCCCCATGTGGGAGACCCCAAGCACAGCCCCAACAAAGTTCAGGGCGGGTCAG
CTGATAACCTGAAGCATCACCATGGCCATGGCCATGGCCGCTCCTCAGATTCCAGCAGCA
GCAGCAGCAGCAGCTCCAGCGACTCGGAAAACGAGGCGAAGCCCGGCGCCGCCGGCTCAC
AGCAGCACAAAAGCGCCTCGGACAAGGTCAAGAAGCCCAAGGTGAAAAAGGAGAAGAAGA
AGAAGGAGGACGAGAAGAAAAAGCCTTCCCACTGACGGGCCTGGGCGGGGTTCATTAAAC
CCTTTTTCGGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGACACACCTGCTCTCGGCACCATGGAGTTCGACCTGTCGGCAGCCGTGGAGTCCCCCT
CCAAAAAGCCCCATGTGGGAGACCCCAAGCACAGCCCCAACAAAGTTCAGGGCGGGTCAG
CTGATAACCTGAAGCATCACCATGGCCATGGCCATGGCCGCTCCTCAGATTCCAGCAGCA
GCAGCAGCAGCAGCTCCAGCGACTCGGAAAACGAGGCGAAGCCCGGCGCCGCCGGCTCAC
AGCAGCACAAAAGCGCCTCGGACAAGGTCAAGAAGCCCAAGGTGAAAAAGGAGAAGAAGA
AGAAGGAGGACGAGAAGAAAAAGCCTTCCCACTGACGGGCCTGGGCGGGGTTCATTAAAC
CCTTTTTCGGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Aligned organism(s): 1 entry(ies)

More info

Aligned organism(s): 1 entry(ies)

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               12-386, gnl|bosTau2|chr3 (857986-857615)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               12-386, gnl|bosTau2|chr3 (857986-857615)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               col (0.585023)
               

               
               nlu (0.383362)
               

               
               ill (0.351185)
               

               
               fcc (0.197785)
               

               
               eje (0.197668)
               

               
               cmu (0.186393)
               

               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               med (0.116252)

Expressed library(ies): 14 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.585023)
               

               
               nlu (0.383362)
               

               
               ill (0.351185)
               

               
               fcc (0.197785)
               

               
               eje (0.197668)
               

               
               cmu (0.186393)
               

               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               med (0.116252)

	col (0.585023)
	nlu (0.383362)
	ill (0.351185)
	fcc (0.197785)
	eje (0.197668)
	cmu (0.186393)
	mcp (0.170648)
	nje (0.16592)
	hlv (0.139256)
	pla (0.133672)
	nmm (0.132802)
	eru (0.120048)
	ebs (0.118301)
	med (0.116252)