Ss1.1-Pig4-TMW8023C13.5
|
ATCCGGTGTTCCAGCCCAGCGGGAAAATGCGGCCTCTGACTGAAGAGGAGACGCGTGTAA
TGTTTGAGAAGATAGCAAAATACATCGGGGAGAATCTTCAGCTGCTGGTTGACAGGCCCG
ACGGCACCTACTGTTTCAGGCTGCACAACGACCGGGTTTACTATGTGAGTGAAAAGATCT
TAAAATTGGCCGCTAATATCTCTGGTGACAAGCTGATGTCGCTGGGAACGTGCTTTGGAA
AATTCACGAAGACCCACAAGTTTCGGTTGCACATCACAGCTCTGGATTACTTAGCACCTT
ATGCCAAGTATAAAGTGTGGATAAAGCCTGGAGCAGAGCAGTCCTTCCTGTATGGGAACC
ATGTGCTGAAATCTGGACTTGGTCGAATCACTGAAAATACTTCACAGTACCAGGGAGTTG
TGGTGTACTCCATGGCAGACATCCCTTTGGGTTTTGGGGTGGCAGCAAAGTCTACACAAG
ACTGCAGGAAAGTAGACCCCATGGCGATTGTGGTATTTCATCAAGCAGACATTGGGGAAT
ATGTGCGGCATGAAGAGACATTGACTTAAAACGAAGTCATCGAGAGGACTTAAGGCTGTG
TGGAAGGGCCTAGCTTTTCCTGTGTCTGTGTAGGCTCCACCGTCATGGTGAATTTTGTCA
ACACTGACCTCTTCAGGGACTTCTTAGTTTAACATTCTATCATGGACAAATCCAGGCTGG
ATTCTTATTATGCAGAAGTGGCTCAAAAATGGAGTTTCGGATCTTTGTGATTGTGACTCA
ATAGAAATCTGTGTTTTATGTTTGAATCAGAGGGCTTCTTGTTTTGAGTAACAGGTTCTA
AATTGTTGGACCCGAGGACAAGAATAGCGTACTTTTGTTATCTATGATAACACTGTTATC
CAAACACAAACATAATGGATTTCCTTAATAATTTATTAACACTGTGAAAGATAGATATTG
CCATATCAGAATAGTAGACTGTGGGGATTTTACAAATGAAATTTGGATAAAATAGTAAGA
GCAGTGTATTCTGTTGCTTTTCTTTATGGTAGGTGCTGTGTGGTATGGAAGAAAAACTTG
GATTCAAACACTGCTTCTGACACTTACTAGCTGTATGGCTTTAGATGAGTCGTTAAACTT
TAATAAGATTCATTTCCTTCTTTTGTTTTAAAAAAACAGAACTGTCTTTCTAAGCATGGT
TTTTAGAATTAGAAATCATGATTGTAAAGTACCTAGTACAGTGCCTGGCAAAACTGAATA
AATGGTAAGAATTATTTTTATAATGCTTATACTGAATATTTCTGTTATTAAGAGTAGCAT
CGTATGACTATAATTTGATATGTTATCCTGGCTTTTACAGGTGGTTTTCTCGATTTTTCT
TTTTCTTGAATGGTGTGATTCCAGGCCAAATGTTACTTTTTATCACCTTCGTTTCCTAAA
ACAACTTCTCTTTTAAGTGTTTTGTTTTAATTGAAATTTTTTATTGAAGTGTAGTTGATT
TACAGTAGTTTGTTAGTTTTCAGGTGTACAGCAAAGTGATTTGGGTATATGTATATACAC
ACCCATATATATATCCTTATAAATACTTGACTAGATAAAAAGCACTAATCAGAGACCCTG
ACATAATTCAGCTCCTCCATTCTTCCCCCATGCCTT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
ATCCGGTGTTCCAGCCCAGCGGGAAAATGCGGCCTCTGACTGAAGAGGAGACGCGTGTAA
TGTTTGAGAAGATAGCAAAATACATCGGGGAGAATCTTCAGCTGCTGGTTGACAGGCCCG
ACGGCACCTACTGTTTCAGGCTGCACAACGACCGGGTTTACTATGTGAGTGAAAAGATCT
TAAAATTGGCCGCTAATATCTCTGGTGACAAGCTGATGTCGCTGGGAACGTGCTTTGGAA
AATTCACGAAGACCCACAAGTTTCGGTTGCACATCACAGCTCTGGATTACTTAGCACCTT
ATGCCAAGTATAAAGTGTGGATAAAGCCTGGAGCAGAGCAGTCCTTCCTGTATGGGAACC
ATGTGCTGAAATCTGGACTTGGTCGAATCACTGAAAATACTTCACAGTACCAGGGAGTTG
TGGTGTACTCCATGGCAGACATCCCTTTGGGTTTTGGGGTGGCAGCAAAGTCTACACAAG
ACTGCAGGAAAGTAGACCCCATGGCGATTGTGGTATTTCATCAAGCAGACATTGGGGAAT
ATGTGCGGCATGAAGAGACATTGACTTAAAACGAAGTCATCGAGAGGACTTAAGGCTGTG
TGGAAGGGCCTAGCTTTTCCTGTGTCTGTGTAGGCTCCACCGTCATGGTGAATTTTGTCA
ACACTGACCTCTTCAGGGACTTCTTAGTTTAACATTCTATCATGGACAAATCCAGGCTGG
ATTCTTATTATGCAGAAGTGGCTCAAAAATGGAGTTTCGGATCTTTGTGATTGTGACTCA
ATAGAAATCTGTGTTTTATGTTTGAATCAGAGGGCTTCTTGTTTTGAGTAACAGGTTCTA
AATTGTTGGACCCGAGGACAAGAATAGCGTACTTTTGTTATCTATGATAACACTGTTATC
CAAACACAAACATAATGGATTTCCTTAATAATTTATTAACACTGTGAAAGATAGATATTG
CCATATCAGAATAGTAGACTGTGGGGATTTTACAAATGAAATTTGGATAAAATAGTAAGA
GCAGTGTATTCTGTTGCTTTTCTTTATGGTAGGTGCTGTGTGGTATGGAAGAAAAACTTG
GATTCAAACACTGCTTCTGACACTTACTAGCTGTATGGCTTTAGATGAGTCGTTAAACTT
TAATAAGATTCATTTCCTTCTTTTGTTTTAAAAAAACAGAACTGTCTTTCTAAGCATGGT
TTTTAGAATTAGAAATCATGATTGTAAAGTACCTAGTACAGTGCCTGGCAAAACTGAATA
AATGGTAAGAATTATTTTTATAATGCTTATACTGAATATTTCTGTTATTAAGAGTAGCAT
CGTATGACTATAATTTGATATGTTATCCTGGCTTTTACAGGTGGTTTTCTCGATTTTTCT
TTTTCTTGAATGGTGTGATTCCAGGCCAAATGTTACTTTTTATCACCTTCGTTTCCTAAA
ACAACTTCTCTTTTAAGTGTTTTGTTTTAATTGAAATTTTTTATTGAAGTGTAGTTGATT
TACAGTAGTTTGTTAGTTTTCAGGTGTACAGCAAAGTGATTTGGGTATATGTATATACAC
ACCCATATATATATCCTTATAAATACTTGACTAGATAAAAAGCACTAATCAGAGACCCTG
ACATAATTCAGCTCCTCCATTCTTCCCCCATGCCTT
|
|
gi|62208251|gb|AAX77005.1| |
Protein identifier
|
gi|62208251|gb|AAX77005.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
168-327, gnl|bosTau2|chr18 (13852705-13852545) |
|
168-327, gnl|canFam2|chr5 (83324230-83324067) |
|
168-327, gnl|danRer3|chr21 (31498718-31498571) |
|
168-327, gnl|dasNov1|scaffold_177286 (4195-4032) |
|
168-327, gnl|echTel1|scaffold_325190 (51882-52047) |
|
168-327, gnl|fr1|chrUn (180337367-180337515) |
|
168-327, gnl|galGal2|chr11_random (122522-122682) |
|
168-327, gnl|hg17|chr16 (67931592-67931757) |
|
168-327, gnl|Hg17|chr16 (67931596-67931758) |
|
168-327, gnl|loxAfr1|scaffold_13715 (48176-48012) |
|
168-327, gnl|mm7|chr8 (105657404-105657574) |
|
168-327, gnl|Mm7|chr8 (105657408-105657575) |
|
168-327, gnl|monDom2|scaffold_23 (4930387-4930224) |
|
168-327, gnl|oryCun1|scaffold_185623 (20609-20457) |
|
168-327, gnl|panTro1|chr18 (62272771-62272936) |
|
168-327, gnl|rheMac2|chr20 (67716815-67716980) |
|
168-327, gnl|rn3|chr19 (36920461-36920626) |
|
168-327, gnl|tetNig1|chr5 (2980319-2980156) |
|
168-327, gnl|xenTro1|scaffold_578 (280529-280676) |
| |
|
449-1620, gnl|bosTau2|chr18 (13851522-13850357) |
|
449-1620, gnl|Hg17|chr16 (67932936-67934215) |
| |
|
1406-1587, gnl|bosTau2|chr13 (57475700-57475524) |
| |
|
1475-1581, gnl|bosTau2|chr11 (48932402-48932507) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
168-327, gnl|bosTau2|chr18 (13852705-13852545) |
|
168-327, gnl|canFam2|chr5 (83324230-83324067) |
|
168-327, gnl|danRer3|chr21 (31498718-31498571) |
|
168-327, gnl|dasNov1|scaffold_177286 (4195-4032) |
|
168-327, gnl|echTel1|scaffold_325190 (51882-52047) |
|
168-327, gnl|fr1|chrUn (180337367-180337515) |
|
168-327, gnl|galGal2|chr11_random (122522-122682) |
|
168-327, gnl|hg17|chr16 (67931592-67931757) |
|
168-327, gnl|Hg17|chr16 (67931596-67931758) |
|
168-327, gnl|loxAfr1|scaffold_13715 (48176-48012) |
|
168-327, gnl|mm7|chr8 (105657404-105657574) |
|
168-327, gnl|Mm7|chr8 (105657408-105657575) |
|
168-327, gnl|monDom2|scaffold_23 (4930387-4930224) |
|
168-327, gnl|oryCun1|scaffold_185623 (20609-20457) |
|
168-327, gnl|panTro1|chr18 (62272771-62272936) |
|
168-327, gnl|rheMac2|chr20 (67716815-67716980) |
|
168-327, gnl|rn3|chr19 (36920461-36920626) |
|
168-327, gnl|tetNig1|chr5 (2980319-2980156) |
|
168-327, gnl|xenTro1|scaffold_578 (280529-280676) |
| |
|
449-1620, gnl|bosTau2|chr18 (13851522-13850357) |
|
449-1620, gnl|Hg17|chr16 (67932936-67934215) |
| |
|
1406-1587, gnl|bosTau2|chr13 (57475700-57475524) |
| |
|
1475-1581, gnl|bosTau2|chr11 (48932402-48932507) |
|
elu (0.385356) |
|
sin (0.349895) |
|
sug (0.254582) |
|
cbe (0.239234) |
|
mgp (0.230681) |
|
cmu (0.186393) |
|
mcp (0.170648) |
|
cje (0.165235) |
|
nco (0.161734) |
|
pty (0.142714) |
|
kid (0.129735) |
|
med (0.116252) |
|
cbl (0.114797) |
|
nbm (0.0993246) |
|
ldo (0.0970026) |
|
elu (0.385356) |
|
sin (0.349895) |
|
sug (0.254582) |
|
cbe (0.239234) |
|
mgp (0.230681) |
|
cmu (0.186393) |
|
mcp (0.170648) |
|
cje (0.165235) |
|
nco (0.161734) |
|
pty (0.142714) |
|
kid (0.129735) |
|
med (0.116252) |
|
cbl (0.114797) |
|
nbm (0.0993246) |
|
ldo (0.0970026) |
