Ss1.1-Pig4-TMW8023C18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGGCTGGCGGCGGCAGCGGTGGGACGCACGGGAGGCGCCCGGTTTGCTAAGCCGGCTCC CCGTGCTGCCCGTGGCGGCGGCGGCCGGGCTTCCCGCCGTGCCCGGGGCCCCGGCGGGCG GCGGGCCCGGCGAGCTCGCCAAGTACGGGCTGCCTGGGGTAGCGCAGCTGAAGAGCCGCG AGTCTTATGTGCTGTGTTACGACCCGCGCACCCGCGGCGCCGTGTGGGTGGTCGAGCAGC TGCGGCCCGAGCGGCTCCGAGGCGACGGCGACCGCCGCTCTTGTGACTTCCATGAGGACG ACTCAGTGCATGCGTACCACCGCGCCACCAACGCCGACTACCGCGGCAGCGGCTTCGACC GCGGCCACCTCGCCGCCGCCGCCAACCACCGCTGGAGCCAGAGGGCCATGGACGACACCT TCTACCTAAGCAACGTCGCGCCCCAGGTGCCACACCTCAACCAGAATGCCTGGAACAACC TGGAAAAGTACAGCCGCAGCCTGACCCGCACCTATCAAAATGTCTATGTCTGCACAGGGC CGCTCTTCCTGCCCAGGACAGAGGCTGACGGGAAGTCCTATGTGAAGTACCAGGTCATTG GCAAGAACCACGTGGCGGTGCCCACCCACTTCTTCAAGGTGCTGATCCTGGAGGCAGCAG GCGGGCAGATCGAACTCCGCTCCTATGTGATGCCCAACGCGCCCGTGGATGAGGCCATCC CGCTGGAGCGCTTCCTGGTGCCCATCGAGAGCATCGAGCGGGCCTCGGGGCTGCTCTTTG TGCCGAATATCCTGGCCCGGACGAGCAGCCTTAAGGCCATCACTGCCGGCAGCAAATAAG GGCCGCCCCAGCCAGACTGTGGGGTCCTGGGGACCAGGTTGAATGAAAGGTATTTATTTT TGGAGACAAGTCTTAGCTGTGTCTGTTCCGGGTGACCTGTGGGACCCTCTGGCTCCACTG CTGCTCCCTGGCCATCCTGGGCCCGACAGAACCTTCAGCTGGGCCGGGCACCTGCCTGGG TGAGGCCAGGCTGCAGGGCGGCCAGGGAGATGAGGATGGCTTCCTCTGTGCGGATGGTGC GGCTGCCCTGGCTGGGGCAGGTGTTGACATACAGGTCGAACAGGACACTGGGTTCAGCCA CCTCCAGGTTGGGGTCAGCGTCCACTGCCGCTTCCAGCCCCTGGAGGCCCCCAAACACCA CGAGAGCGTGCCTGAAGTTGGGAAGCTGGGCGGAGGCCACATCCGAGCCTCGCTCTGATG TCCCAATGGTCAGGTCATAGCCGTCCTGGAAGGGGGCCTCAGCAAACACAGCACTGAGGC AGGAGGCCAGGCGGACGGTGTAGCCCCAGTAGAGACCAGCTTTGGTGCGGGGGTCCTGCG ACGACACAACTTTTCCACGGTAGGTCTTGCTCTCTGGAAGCTGCTTCTGGTTCAGCCACA CTGTCACCCGAAGTCCAGGCTCCAAGTTCTTGTCGATTTTCACTTCCTTCTTCATGCCAC AGTTGACAAAGGAGCCCTGGCCCGGCCGTGTGGGCCGGTCCACCACGACACCCTCTCGGA ACTCGGAGTCCTCGTCCTGACGCATGTGGTGAGGGCTGTCCAAGGGGTTCAGGAGCCCTG CAAACTGTAGATCCTGATGCTTGGGGAAGAATGCCTTTCTTAGGTACTGTGGACACTCCA GGTACTGCAGGATCCGGGCCAGCTGCACGCATGCCTGCCCCTTCTTGCCAACTCCCCTGA ACTCCCCCTCCACAGTCTTGGCATCTTGGCCCTCTTCATCGAACACCACGATCTCATCCA CACAGAAGATGGCACAGGCTCTGGCAATCTGGCCAGCCAGGTAGGTGCGAAGCTCGGGCG ACTGGGCGTTGTCCAGGATGGAGCCCGGCAAGGCCACGCTCAGGGTGTAGTGCCGCCCCC GATCCTCCCTCTGGGCAGCTGCCTCCTCCTCCTCCTGCTGGCGCTTTGCCTGTTCCTCCT GGGCTCTCTGCCGCTCCAGTTTTTTCATCATCTTGAGATCCTTCCACTTCTTTTTCTCCT CTTTTTTCTGTTGCTTCCATTTTCGCCACTCGACCCTTTGGCCATGTTCACCCGGGCCGC ACGGCCGTTTTCTAGCGCGCTCCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGGCTGGCGGCGGCAGCGGTGGGACGCACGGGAGGCGCCCGGTTTGCTAAGCCGGCTCC CCGTGCTGCCCGTGGCGGCGGCGGCCGGGCTTCCCGCCGTGCCCGGGGCCCCGGCGGGCG GCGGGCCCGGCGAGCTCGCCAAGTACGGGCTGCCTGGGGTAGCGCAGCTGAAGAGCCGCG AGTCTTATGTGCTGTGTTACGACCCGCGCACCCGCGGCGCCGTGTGGGTGGTCGAGCAGC TGCGGCCCGAGCGGCTCCGAGGCGACGGCGACCGCCGCTCTTGTGACTTCCATGAGGACG ACTCAGTGCATGCGTACCACCGCGCCACCAACGCCGACTACCGCGGCAGCGGCTTCGACC GCGGCCACCTCGCCGCCGCCGCCAACCACCGCTGGAGCCAGAGGGCCATGGACGACACCT TCTACCTAAGCAACGTCGCGCCCCAGGTGCCACACCTCAACCAGAATGCCTGGAACAACC TGGAAAAGTACAGCCGCAGCCTGACCCGCACCTATCAAAATGTCTATGTCTGCACAGGGC CGCTCTTCCTGCCCAGGACAGAGGCTGACGGGAAGTCCTATGTGAAGTACCAGGTCATTG GCAAGAACCACGTGGCGGTGCCCACCCACTTCTTCAAGGTGCTGATCCTGGAGGCAGCAG GCGGGCAGATCGAACTCCGCTCCTATGTGATGCCCAACGCGCCCGTGGATGAGGCCATCC CGCTGGAGCGCTTCCTGGTGCCCATCGAGAGCATCGAGCGGGCCTCGGGGCTGCTCTTTG TGCCGAATATCCTGGCCCGGACGAGCAGCCTTAAGGCCATCACTGCCGGCAGCAAATAAG GGCCGCCCCAGCCAGACTGTGGGGTCCTGGGGACCAGGTTGAATGAAAGGTATTTATTTT TGGAGACAAGTCTTAGCTGTGTCTGTTCCGGGTGACCTGTGGGACCCTCTGGCTCCACTG CTGCTCCCTGGCCATCCTGGGCCCGACAGAACCTTCAGCTGGGCCGGGCACCTGCCTGGG TGAGGCCAGGCTGCAGGGCGGCCAGGGAGATGAGGATGGCTTCCTCTGTGCGGATGGTGC GGCTGCCCTGGCTGGGGCAGGTGTTGACATACAGGTCGAACAGGACACTGGGTTCAGCCA CCTCCAGGTTGGGGTCAGCGTCCACTGCCGCTTCCAGCCCCTGGAGGCCCCCAAACACCA CGAGAGCGTGCCTGAAGTTGGGAAGCTGGGCGGAGGCCACATCCGAGCCTCGCTCTGATG TCCCAATGGTCAGGTCATAGCCGTCCTGGAAGGGGGCCTCAGCAAACACAGCACTGAGGC AGGAGGCCAGGCGGACGGTGTAGCCCCAGTAGAGACCAGCTTTGGTGCGGGGGTCCTGCG ACGACACAACTTTTCCACGGTAGGTCTTGCTCTCTGGAAGCTGCTTCTGGTTCAGCCACA CTGTCACCCGAAGTCCAGGCTCCAAGTTCTTGTCGATTTTCACTTCCTTCTTCATGCCAC AGTTGACAAAGGAGCCCTGGCCCGGCCGTGTGGGCCGGTCCACCACGACACCCTCTCGGA ACTCGGAGTCCTCGTCCTGACGCATGTGGTGAGGGCTGTCCAAGGGGTTCAGGAGCCCTG CAAACTGTAGATCCTGATGCTTGGGGAAGAATGCCTTTCTTAGGTACTGTGGACACTCCA GGTACTGCAGGATCCGGGCCAGCTGCACGCATGCCTGCCCCTTCTTGCCAACTCCCCTGA ACTCCCCCTCCACAGTCTTGGCATCTTGGCCCTCTTCATCGAACACCACGATCTCATCCA CACAGAAGATGGCACAGGCTCTGGCAATCTGGCCAGCCAGGTAGGTGCGAAGCTCGGGCG ACTGGGCGTTGTCCAGGATGGAGCCCGGCAAGGCCACGCTCAGGGTGTAGTGCCGCCCCC GATCCTCCCTCTGGGCAGCTGCCTCCTCCTCCTCCTGCTGGCGCTTTGCCTGTTCCTCCT GGGCTCTCTGCCGCTCCAGTTTTTTCATCATCTTGAGATCCTTCCACTTCTTTTTCTCCT CTTTTTTCTGTTGCTTCCATTTTCGCCACTCGACCCTTTGGCCATGTTCACCCGGGCCGC ACGGCCGTTTTCTAGCGCGCTCCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 713-1915, + strand, RNAz p=0.993703 | |
| 1211-1330, + strand, RNAz p=0.719182 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 713-1915, + strand, RNAz p=0.993703 | |
| 1211-1330, + strand, RNAz p=0.719182 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_004435, + |
| Aligned organism(s): 59 entry(ies) | More info |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
| 1-448, gnl|bosTau2|chr11 (78584409-78584856) | |
| 1-448, gnl|Hg17|chr9 (128660579-128661020) | |
| 1-448, gnl|Mm7|chr2 (30178947-30179379) | |
| 554-1065, gnl|bosTau2|chr11 (78587508-78588017) | |
| 554-1065, gnl|Hg17|chr9 (128664158-128664668) | |
| 554-1065, gnl|Mm7|chr2 (30180999-30181498) | |
| 1211-1330, gnl|bosTau2|chr11 (78589295-78589414) | |
| 1211-1330, gnl|canFam2|chr9 (58152216-58152091) | |
| 1211-1330, gnl|danRer3|chr14 (37387826-37387720) | |
| 1211-1330, gnl|dasNov1|scaffold_85687 (6113-5992) | |
| 1211-1330, gnl|echTel1|scaffold_307926 (52994-52868) | |
| 1211-1330, gnl|fr1|chrUn (120355838-120355731) | |
| 1211-1330, gnl|galGal2|chr17 (5472839-5472729) | |
| 1211-1330, gnl|hg17|chr9 (128665904-128666029) | |
| 1211-1330, gnl|Hg17|chr9 (128665904-128666023) | |
| 1211-1330, gnl|loxAfr1|scaffold_52193 (3454-3579) | |
| 1211-1330, gnl|mm7|chr2 (30182497-30182621) | |
| 1211-1330, gnl|Mm7|chr2 (30182497-30182616) | |
| 1211-1330, gnl|monDom2|scaffold_51 (3372991-3373118) | |
| 1211-1330, gnl|oryCun1|scaffold_179450 (36119-35995) | |
| 1211-1330, gnl|panTro1|chr11 (113505188-113505313) | |
| 1211-1330, gnl|rheMac2|chr15 (10027182-10027057) | |
| 1211-1330, gnl|rn3|chr3 (9189063-9189187) | |
| 1211-1330, gnl|tetNig1|chr4 (3079129-3079022) | |
| 1211-1330, gnl|xenTro1|scaffold_225 (665363-665240) | |
| 1483-1621, gnl|bosTau2|chr11 (78591230-78591368) | |
| 1483-1621, gnl|canFam2|chr9 (58149649-58149507) | |
| 1483-1621, gnl|danRer3|chr14 (37412746-37412886) | |
| 1483-1621, gnl|dasNov1|scaffold_85687 (3694-3539) | |
| 1483-1621, gnl|echTel1|scaffold_316003 (15242-15400) | |
| 1483-1621, gnl|fr1|chrUn (120355102-120354949) | |
| 1483-1621, gnl|galGal2|chr17 (5471115-5470977) | |
| 1483-1621, gnl|hg17|chr9 (128667851-128668004) | |
| 1483-1621, gnl|Hg17|chr9 (128667851-128667989) | |
| 1483-1621, gnl|loxAfr1|scaffold_52193 (5367-5514) | |
| 1483-1621, gnl|mm7|chr2 (30183669-30183809) | |
| 1483-1621, gnl|Mm7|chr2 (30183669-30183806) | |
| 1483-1621, gnl|monDom2|scaffold_51 (3374837-3375004) | |
| 1483-1621, gnl|oryCun1|scaffold_179450 (34623-34485) | |
| 1483-1621, gnl|panTro1|chr11 (113507115-113507268) | |
| 1483-1621, gnl|rn3|chr3 (9190791-9190932) | |
| 1483-1621, gnl|tetNig1|chr4 (3078572-3078433) | |
| 1483-1621, gnl|xenTro1|scaffold_225 (664413-664271) | |
| 1757-1918, gnl|bosTau2|chr11 (78592068-78592229) | |
| 1757-1918, gnl|canFam2|chr9 (58148818-58148638) | |
| 1757-1918, gnl|danRer3|chr14 (37416041-37416219) | |
| 1757-1918, gnl|echTel1|scaffold_316003 (15954-16133) | |
| 1757-1918, gnl|fr1|chrUn (120354537-120354364) | |
| 1757-1918, gnl|galGal2|chr17 (5469753-5469577) | |
| 1757-1918, gnl|hg17|chr9 (128668854-128669034) | |
| 1757-1918, gnl|Hg17|chr9 (128668864-128669025) | |
| 1757-1918, gnl|mm7|chr2 (30184628-30184802) | |
| 1757-1918, gnl|Mm7|chr2 (30184633-30184794) | |
| 1757-1918, gnl|monDom2|scaffold_51 (3376494-3376679) | |
| 1757-1918, gnl|oryCun1|scaffold_179450 (33762-33581) | |
| 1757-1918, gnl|panTro1|chr11 (113508120-113508300) | |
| 1757-1918, gnl|rn3|chr3 (9191852-9192024) | |
| 1757-1918, gnl|tetNig1|chr4 (3078057-3077888) | |
| 1757-1918, gnl|xenTro1|scaffold_225 (662311-662146) |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-448, gnl|bosTau2|chr11 (78584409-78584856) | |
| 1-448, gnl|Hg17|chr9 (128660579-128661020) | |
| 1-448, gnl|Mm7|chr2 (30178947-30179379) | |
| 554-1065, gnl|bosTau2|chr11 (78587508-78588017) | |
| 554-1065, gnl|Hg17|chr9 (128664158-128664668) | |
| 554-1065, gnl|Mm7|chr2 (30180999-30181498) | |
| 1211-1330, gnl|bosTau2|chr11 (78589295-78589414) | |
| 1211-1330, gnl|canFam2|chr9 (58152216-58152091) | |
| 1211-1330, gnl|danRer3|chr14 (37387826-37387720) | |
| 1211-1330, gnl|dasNov1|scaffold_85687 (6113-5992) | |
| 1211-1330, gnl|echTel1|scaffold_307926 (52994-52868) | |
| 1211-1330, gnl|fr1|chrUn (120355838-120355731) | |
| 1211-1330, gnl|galGal2|chr17 (5472839-5472729) | |
| 1211-1330, gnl|hg17|chr9 (128665904-128666029) | |
| 1211-1330, gnl|Hg17|chr9 (128665904-128666023) | |
| 1211-1330, gnl|loxAfr1|scaffold_52193 (3454-3579) | |
| 1211-1330, gnl|mm7|chr2 (30182497-30182621) | |
| 1211-1330, gnl|Mm7|chr2 (30182497-30182616) | |
| 1211-1330, gnl|monDom2|scaffold_51 (3372991-3373118) | |
| 1211-1330, gnl|oryCun1|scaffold_179450 (36119-35995) | |
| 1211-1330, gnl|panTro1|chr11 (113505188-113505313) | |
| 1211-1330, gnl|rheMac2|chr15 (10027182-10027057) | |
| 1211-1330, gnl|rn3|chr3 (9189063-9189187) | |
| 1211-1330, gnl|tetNig1|chr4 (3079129-3079022) | |
| 1211-1330, gnl|xenTro1|scaffold_225 (665363-665240) | |
| 1483-1621, gnl|bosTau2|chr11 (78591230-78591368) | |
| 1483-1621, gnl|canFam2|chr9 (58149649-58149507) | |
| 1483-1621, gnl|danRer3|chr14 (37412746-37412886) | |
| 1483-1621, gnl|dasNov1|scaffold_85687 (3694-3539) | |
| 1483-1621, gnl|echTel1|scaffold_316003 (15242-15400) | |
| 1483-1621, gnl|fr1|chrUn (120355102-120354949) | |
| 1483-1621, gnl|galGal2|chr17 (5471115-5470977) | |
| 1483-1621, gnl|hg17|chr9 (128667851-128668004) | |
| 1483-1621, gnl|Hg17|chr9 (128667851-128667989) | |
| 1483-1621, gnl|loxAfr1|scaffold_52193 (5367-5514) | |
| 1483-1621, gnl|mm7|chr2 (30183669-30183809) | |
| 1483-1621, gnl|Mm7|chr2 (30183669-30183806) | |
| 1483-1621, gnl|monDom2|scaffold_51 (3374837-3375004) | |
| 1483-1621, gnl|oryCun1|scaffold_179450 (34623-34485) | |
| 1483-1621, gnl|panTro1|chr11 (113507115-113507268) | |
| 1483-1621, gnl|rn3|chr3 (9190791-9190932) | |
| 1483-1621, gnl|tetNig1|chr4 (3078572-3078433) | |
| 1483-1621, gnl|xenTro1|scaffold_225 (664413-664271) | |
| 1757-1918, gnl|bosTau2|chr11 (78592068-78592229) | |
| 1757-1918, gnl|canFam2|chr9 (58148818-58148638) | |
| 1757-1918, gnl|danRer3|chr14 (37416041-37416219) | |
| 1757-1918, gnl|echTel1|scaffold_316003 (15954-16133) | |
| 1757-1918, gnl|fr1|chrUn (120354537-120354364) | |
| 1757-1918, gnl|galGal2|chr17 (5469753-5469577) | |
| 1757-1918, gnl|hg17|chr9 (128668854-128669034) | |
| 1757-1918, gnl|Hg17|chr9 (128668864-128669025) | |
| 1757-1918, gnl|mm7|chr2 (30184628-30184802) | |
| 1757-1918, gnl|Mm7|chr2 (30184633-30184794) | |
| 1757-1918, gnl|monDom2|scaffold_51 (3376494-3376679) | |
| 1757-1918, gnl|oryCun1|scaffold_179450 (33762-33581) | |
| 1757-1918, gnl|panTro1|chr11 (113508120-113508300) | |
| 1757-1918, gnl|rn3|chr3 (9191852-9192024) | |
| 1757-1918, gnl|tetNig1|chr4 (3078057-3077888) | |
| 1757-1918, gnl|xenTro1|scaffold_225 (662311-662146) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| nbm (0.198649) | |
| fty (0.17584) | |
| cag (0.151194) | |
| pla (0.133672) | |
| cov (0.132153) | |
| cly (0.120642) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| eje (0.0988338) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nbm (0.198649) | |
| fty (0.17584) | |
| cag (0.151194) | |
| pla (0.133672) | |
| cov (0.132153) | |
| cly (0.120642) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| eje (0.0988338) |