Non-Coding RNA Search

Ss1.1-Pig4-TMW8023C21.5

Sequence:


               
               CAAAGGTGCAACAGGAAACTTTCTATTTGGTTATGAAAAGAAAGCTTACCTTAGAATCCA
AATTAGACAAGCCTAGAATGTTTGATAAGGTTAAAACATATATTGGGAACAAACAGATAT
TGTGGGAAGATTTGAGTTTGGTGAGATTTTCACCCCAAGGTCTGATGTGGATGCGGACAG
GAAAATCCATATTTAAGTGGAAAATGTAATATCTGATTGCTTTGTCAGGCGAAGTGCCCC
TTTATATATCCAAAAACATCTATTTGTGACCTTAAACATGTGGACCCATAGGTGCAGTTA
GAAGAAGACAACCTATTTTTATTTATGTTAGAAGGAGTAGAGTATTTTTTTCAAGACATT
TATTTTTCAGAGTGGTGATAATTTTACTTTGGATACTCTGTGCCAATTTATTTATAGTCA
AGTGTTTACACTTTTTCCTGTGGAATAATTATGTCTAACTTTTTACGTGTTTGTTGAGAT
TATACTGTGGTCTTTCTTTTTCCTCTAATTATATTGCACTTGTATAACAAATTTCCCACA
TCTTCCCGTTTCTAAGCATATTTTATATATTAAGATGTTTGTTCCTGAAAGGTTCTTTTG
TTGTGAGATCAGCAACACTAGCACTTCACTATTATAGTTTTTTAAAAAAGTTAAGTGTTG
TTATCCTTATCTGTAGTTATGTCTGGAAAGTACTTTGCAAACTGTTTATAAGGAGAGTAG
CTTCTTTGTGAGTGTGTGTGTGTGTGATGTTTGTGTGTGGGATGATTTTAGGAAATTAAG
TTATTTTCCTAAAAAAAAATTCAGAACTACTTTCCTCTGTGACAACCAAAAAGAAAAGTC
TATAACCTGAAAATGTTTCATGTTCTCAGCTGTGAAACTCTTAAAACGAAAAGTGTATTT
TAGAGACAAGGGAGAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAAGGTGCAACAGGAAACTTTCTATTTGGTTATGAAAAGAAAGCTTACCTTAGAATCCA
AATTAGACAAGCCTAGAATGTTTGATAAGGTTAAAACATATATTGGGAACAAACAGATAT
TGTGGGAAGATTTGAGTTTGGTGAGATTTTCACCCCAAGGTCTGATGTGGATGCGGACAG
GAAAATCCATATTTAAGTGGAAAATGTAATATCTGATTGCTTTGTCAGGCGAAGTGCCCC
TTTATATATCCAAAAACATCTATTTGTGACCTTAAACATGTGGACCCATAGGTGCAGTTA
GAAGAAGACAACCTATTTTTATTTATGTTAGAAGGAGTAGAGTATTTTTTTCAAGACATT
TATTTTTCAGAGTGGTGATAATTTTACTTTGGATACTCTGTGCCAATTTATTTATAGTCA
AGTGTTTACACTTTTTCCTGTGGAATAATTATGTCTAACTTTTTACGTGTTTGTTGAGAT
TATACTGTGGTCTTTCTTTTTCCTCTAATTATATTGCACTTGTATAACAAATTTCCCACA
TCTTCCCGTTTCTAAGCATATTTTATATATTAAGATGTTTGTTCCTGAAAGGTTCTTTTG
TTGTGAGATCAGCAACACTAGCACTTCACTATTATAGTTTTTTAAAAAAGTTAAGTGTTG
TTATCCTTATCTGTAGTTATGTCTGGAAAGTACTTTGCAAACTGTTTATAAGGAGAGTAG
CTTCTTTGTGAGTGTGTGTGTGTGTGATGTTTGTGTGTGGGATGATTTTAGGAAATTAAG
TTATTTTCCTAAAAAAAAATTCAGAACTACTTTCCTCTGTGACAACCAAAAAGAAAAGTC
TATAACCTGAAAATGTTTCATGTTCTCAGCTGTGAAACTCTTAAAACGAAAAGTGTATTT
TAGAGACAAGGGAGAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               343-455, - strand, RNAz p=0.533296

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               343-455, - strand, RNAz p=0.533296

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-924, gnl|bosTau2|chr3 (23452014-23451086)
               

               
               2-924, gnl|Hg17|chr1 (116092124-116091217)
               

               
               2-924, gnl|Mm7|chr3 (101807451-101808427)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-924, gnl|bosTau2|chr3 (23452014-23451086)
               

               
               2-924, gnl|Hg17|chr1 (116092124-116091217)
               

               
               2-924, gnl|Mm7|chr3 (101807451-101808427)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               ece (0.229305)
               

               
               hyp (0.142837)
               

               
               ebs (0.118301)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               hyp (0.142837)
               

               
               ebs (0.118301)

	2-924, gnl\|bosTau2\|chr3 (23452014-23451086)
	2-924, gnl\|Hg17\|chr1 (116092124-116091217)
	2-924, gnl\|Mm7\|chr3 (101807451-101808427)