Ss1.1-Pig4-TMW8023C22.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCAGGCTGGTCAGTATGGCGTGGCCCAGACGAGGAGGCGGGCCATCATCCTGGCCGCGGC CCCCGGAGAGCAGCTCCCGCTGTTCCCAGAGCCACTACACGTGTTCGCACCCCGGGCCTG TCAGCTGAGCGTCGTGGTCGATGATAAGAAGTTTGTCAGCAACATCACTAGGTTGAGCTC GGGTCCCTTCCGAACCATCACTGTGCGGGACACAATGTCCGACCTTCCCGAGATCCGGAA TGGAGCATCGGCGCAGGAGATCTCGTACAATGGAGAGCCTCAGTCCTGGTTCCAAAGGCA GCTCCGGGGCTCGCAGTACCAGCCCATCCTCAGGGACCACATCTGTAAGGACATGAGCGC CTTGGTGGCCGCCCGTATGCGGCACATCCCTCTGGCCCCAGGCTCAGACTGGCGGGACCT ACCAAACATTGAGGTGCGGCTCTCAGACGGCACCTTGGCCAGGAAGCTGCGGTACAACTA CCACGACAAGAAGAATGGCTGCAGCAGCACCGGGGCCCTCCGTGGGGTCTGCTCCTGCGT GGAAGTGGGCAAAGCCTGTGACCCTGCGGCCAGACAATTCAATACCCTCATTCCCTGGTG CTTGCCCCACACCGGGAACAGGCACAACCACTGGGCTGGCCTCTATGGACGGCTTGAGTG GGATGGCTTTTTCAGCACAACTGTCACCAACCCTGAGCCCATGGGCAAGCAGGGCCGCGT GCTCCACCCGGAACAGCACCGTGTGGTGAGCGTGCGGGAGTGTGCCCGCTCCCAGGGCTT CCCCGACACCTACCGGTTGTTCGGCAACATCCTGGACAAGCACCGGCAGGTGGGTAATGC TGTGCCACCACCGCTGGCCAAAGCCATTGGCTTAGAGATCAAGCGCTGTATGTTGGCCAA AGCACGAGAGAGCGCCTCAGTTAAAGTCAAGGAAGAGACTACGAAGGACTAGTTTTGCCC TCCCATCGCCTTTGTTTCTGGCACCAGGGATCCCCAACGTGCACTGATATTGTATTTTTA ACATTTCAGTCTGTCAGTTCAATGTGTTGTACACGGTGTTTGTGGCCTTGGCTGACAGTG AAACTGTTCTGTGAGGTTTGCTTATCAACTAACTGACTTAGTGATCAAACTGTGCAGTAC TTTGTGCATTCTGGATTTTAAAGGTTTTTTATTATGCATTATATCAAATTTACCACTGTA TGAGTGGAAATTTAAGACTTTATGTAGTTTTTATATGTTGTAATATTTCTTCAAATAAAT CTCTCCTATAAATTGCAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCAGGCTGGTCAGTATGGCGTGGCCCAGACGAGGAGGCGGGCCATCATCCTGGCCGCGGC CCCCGGAGAGCAGCTCCCGCTGTTCCCAGAGCCACTACACGTGTTCGCACCCCGGGCCTG TCAGCTGAGCGTCGTGGTCGATGATAAGAAGTTTGTCAGCAACATCACTAGGTTGAGCTC GGGTCCCTTCCGAACCATCACTGTGCGGGACACAATGTCCGACCTTCCCGAGATCCGGAA TGGAGCATCGGCGCAGGAGATCTCGTACAATGGAGAGCCTCAGTCCTGGTTCCAAAGGCA GCTCCGGGGCTCGCAGTACCAGCCCATCCTCAGGGACCACATCTGTAAGGACATGAGCGC CTTGGTGGCCGCCCGTATGCGGCACATCCCTCTGGCCCCAGGCTCAGACTGGCGGGACCT ACCAAACATTGAGGTGCGGCTCTCAGACGGCACCTTGGCCAGGAAGCTGCGGTACAACTA CCACGACAAGAAGAATGGCTGCAGCAGCACCGGGGCCCTCCGTGGGGTCTGCTCCTGCGT GGAAGTGGGCAAAGCCTGTGACCCTGCGGCCAGACAATTCAATACCCTCATTCCCTGGTG CTTGCCCCACACCGGGAACAGGCACAACCACTGGGCTGGCCTCTATGGACGGCTTGAGTG GGATGGCTTTTTCAGCACAACTGTCACCAACCCTGAGCCCATGGGCAAGCAGGGCCGCGT GCTCCACCCGGAACAGCACCGTGTGGTGAGCGTGCGGGAGTGTGCCCGCTCCCAGGGCTT CCCCGACACCTACCGGTTGTTCGGCAACATCCTGGACAAGCACCGGCAGGTGGGTAATGC TGTGCCACCACCGCTGGCCAAAGCCATTGGCTTAGAGATCAAGCGCTGTATGTTGGCCAA AGCACGAGAGAGCGCCTCAGTTAAAGTCAAGGAAGAGACTACGAAGGACTAGTTTTGCCC TCCCATCGCCTTTGTTTCTGGCACCAGGGATCCCCAACGTGCACTGATATTGTATTTTTA ACATTTCAGTCTGTCAGTTCAATGTGTTGTACACGGTGTTTGTGGCCTTGGCTGACAGTG AAACTGTTCTGTGAGGTTTGCTTATCAACTAACTGACTTAGTGATCAAACTGTGCAGTAC TTTGTGCATTCTGGATTTTAAAGGTTTTTTATTATGCATTATATCAAATTTACCACTGTA TGAGTGGAAATTTAAGACTTTATGTAGTTTTTATATGTTGTAATATTTCTTCAAATAAAT CTCTCCTATAAATTGCAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 53 entry(ies) | More info |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
| 3-173, gnl|bosTau2|chr7 (9653779-9653949) | |
| 3-173, gnl|canFam2|chr20 (53927215-53927030) | |
| 3-173, gnl|danRer3|chr14 (51518264-51518439) | |
| 3-173, gnl|echTel1|scaffold_314797 (42962-42790) | |
| 3-173, gnl|fr1|chrUn (67814902-67814714) | |
| 3-173, gnl|hg17|chr19 (10110113-10110301) | |
| 3-173, gnl|Hg17|chr19 (10110283-10110113) | |
| 3-173, gnl|loxAfr1|scaffold_22612 (14648-14460) | |
| 3-173, gnl|mm7|chr9 (20786694-20786882) | |
| 3-173, gnl|Mm7|chr9 (20786864-20786694) | |
| 3-173, gnl|monDom2|scaffold_106 (1885921-1886093) | |
| 3-173, gnl|panTro1|chr20 (10491283-10491471) | |
| 3-173, gnl|rheMac2|chr19 (9941923-9942111) | |
| 3-173, gnl|rn3|chr8 (19930062-19930250) | |
| 3-173, gnl|tetNig1|chr3 (11555682-11555861) | |
| 3-173, gnl|xenTro1|scaffold_56 (2561526-2561698) | |
| 348-549, gnl|bosTau2|chr7 (9655197-9655399) | |
| 348-549, gnl|canFam2|chr20 (53928692-53928486) | |
| 348-549, gnl|danRer3|chr14 (51517570-51517776) | |
| 348-549, gnl|fr1|chrUn (67815458-67815258) | |
| 348-549, gnl|hg17|chr19 (10108757-10108963) | |
| 348-549, gnl|Hg17|chr19 (10108958-10108756) | |
| 348-549, gnl|loxAfr1|scaffold_22612 (16349-16143) | |
| 348-549, gnl|mm7|chr9 (20785642-20785848) | |
| 348-549, gnl|Mm7|chr9 (20785843-20785641) | |
| 348-549, gnl|monDom2|scaffold_106 (1883652-1883858) | |
| 348-549, gnl|panTro1|chr20 (10489929-10490135) | |
| 348-549, gnl|rheMac2|chr19 (9940577-9940783) | |
| 348-549, gnl|rn3|chr8 (19929005-19929207) | |
| 348-549, gnl|tetNig1|chr3 (11555151-11555351) | |
| 348-549, gnl|xenTro1|scaffold_56 (2559824-2560026) | |
| 710-831, gnl|bosTau2|chr7 (9655995-9656116) | |
| 710-831, gnl|canFam2|chr20 (53929444-53929340) | |
| 710-831, gnl|danRer3|chr14 (51517098-51517203) | |
| 710-831, gnl|dasNov1|scaffold_180517 (161-50) | |
| 710-831, gnl|echTel1|scaffold_131235 (237-135) | |
| 710-831, gnl|fr1|chrUn (67815911-67815803) | |
| 710-831, gnl|hg17|chr19 (10107397-10107511) | |
| 710-831, gnl|Hg17|chr19 (10107531-10107410) | |
| 710-831, gnl|loxAfr1|scaffold_22612 (17281-17167) | |
| 710-831, gnl|mm7|chr9 (20785023-20785127) | |
| 710-831, gnl|Mm7|chr9 (20785147-20785026) | |
| 710-831, gnl|monDom2|scaffold_106 (1881498-1881602) | |
| 710-831, gnl|oryCun1|scaffold_177915 (104607-104507) | |
| 710-831, gnl|panTro1|chr20 (10488568-10488682) | |
| 710-831, gnl|rheMac2|chr19 (9939164-9939278) | |
| 710-831, gnl|rn3|chr8 (19928719-19928823) | |
| 710-831, gnl|tetNig1|chr3 (11554714-11554828) | |
| 710-831, gnl|xenTro1|scaffold_56 (2558835-2558939) | |
| 1066-1274, gnl|bosTau2|chr12 (10457633-10457427) | |
| 1066-1274, gnl|Hg17|chr19 (10105228-10105023) | |
| 1165-1272, gnl|bosTau2|chr10 (32022502-32022396) | |
| 1165-1272, gnl|Hg17|chr19 (10105124-10105025) |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-173, gnl|bosTau2|chr7 (9653779-9653949) | |
| 3-173, gnl|canFam2|chr20 (53927215-53927030) | |
| 3-173, gnl|danRer3|chr14 (51518264-51518439) | |
| 3-173, gnl|echTel1|scaffold_314797 (42962-42790) | |
| 3-173, gnl|fr1|chrUn (67814902-67814714) | |
| 3-173, gnl|hg17|chr19 (10110113-10110301) | |
| 3-173, gnl|Hg17|chr19 (10110283-10110113) | |
| 3-173, gnl|loxAfr1|scaffold_22612 (14648-14460) | |
| 3-173, gnl|mm7|chr9 (20786694-20786882) | |
| 3-173, gnl|Mm7|chr9 (20786864-20786694) | |
| 3-173, gnl|monDom2|scaffold_106 (1885921-1886093) | |
| 3-173, gnl|panTro1|chr20 (10491283-10491471) | |
| 3-173, gnl|rheMac2|chr19 (9941923-9942111) | |
| 3-173, gnl|rn3|chr8 (19930062-19930250) | |
| 3-173, gnl|tetNig1|chr3 (11555682-11555861) | |
| 3-173, gnl|xenTro1|scaffold_56 (2561526-2561698) | |
| 348-549, gnl|bosTau2|chr7 (9655197-9655399) | |
| 348-549, gnl|canFam2|chr20 (53928692-53928486) | |
| 348-549, gnl|danRer3|chr14 (51517570-51517776) | |
| 348-549, gnl|fr1|chrUn (67815458-67815258) | |
| 348-549, gnl|hg17|chr19 (10108757-10108963) | |
| 348-549, gnl|Hg17|chr19 (10108958-10108756) | |
| 348-549, gnl|loxAfr1|scaffold_22612 (16349-16143) | |
| 348-549, gnl|mm7|chr9 (20785642-20785848) | |
| 348-549, gnl|Mm7|chr9 (20785843-20785641) | |
| 348-549, gnl|monDom2|scaffold_106 (1883652-1883858) | |
| 348-549, gnl|panTro1|chr20 (10489929-10490135) | |
| 348-549, gnl|rheMac2|chr19 (9940577-9940783) | |
| 348-549, gnl|rn3|chr8 (19929005-19929207) | |
| 348-549, gnl|tetNig1|chr3 (11555151-11555351) | |
| 348-549, gnl|xenTro1|scaffold_56 (2559824-2560026) | |
| 710-831, gnl|bosTau2|chr7 (9655995-9656116) | |
| 710-831, gnl|canFam2|chr20 (53929444-53929340) | |
| 710-831, gnl|danRer3|chr14 (51517098-51517203) | |
| 710-831, gnl|dasNov1|scaffold_180517 (161-50) | |
| 710-831, gnl|echTel1|scaffold_131235 (237-135) | |
| 710-831, gnl|fr1|chrUn (67815911-67815803) | |
| 710-831, gnl|hg17|chr19 (10107397-10107511) | |
| 710-831, gnl|Hg17|chr19 (10107531-10107410) | |
| 710-831, gnl|loxAfr1|scaffold_22612 (17281-17167) | |
| 710-831, gnl|mm7|chr9 (20785023-20785127) | |
| 710-831, gnl|Mm7|chr9 (20785147-20785026) | |
| 710-831, gnl|monDom2|scaffold_106 (1881498-1881602) | |
| 710-831, gnl|oryCun1|scaffold_177915 (104607-104507) | |
| 710-831, gnl|panTro1|chr20 (10488568-10488682) | |
| 710-831, gnl|rheMac2|chr19 (9939164-9939278) | |
| 710-831, gnl|rn3|chr8 (19928719-19928823) | |
| 710-831, gnl|tetNig1|chr3 (11554714-11554828) | |
| 710-831, gnl|xenTro1|scaffold_56 (2558835-2558939) | |
| 1066-1274, gnl|bosTau2|chr12 (10457633-10457427) | |
| 1066-1274, gnl|Hg17|chr19 (10105228-10105023) | |
| 1165-1272, gnl|bosTau2|chr10 (32022502-32022396) | |
| 1165-1272, gnl|Hg17|chr19 (10105124-10105025) |
| Expressed library(ies): 15 entry(ies) | More info |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
| hea (0.408998) | |
| che (0.408942) | |
| ova (0.387397) | |
| fbs (0.350693) | |
| cte (0.29274) | |
| spl (0.286369) | |
| bla (0.248694) | |
| cbe (0.239234) | |
| gul (0.177588) | |
| sin (0.174948) | |
| csk (0.140746) | |
| lyg (0.133103) | |
| kid (0.129735) | |
| cly (0.120642) | |
| cty (0.10408) |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hea (0.408998) | |
| che (0.408942) | |
| ova (0.387397) | |
| fbs (0.350693) | |
| cte (0.29274) | |
| spl (0.286369) | |
| bla (0.248694) | |
| cbe (0.239234) | |
| gul (0.177588) | |
| sin (0.174948) | |
| csk (0.140746) | |
| lyg (0.133103) | |
| kid (0.129735) | |
| cly (0.120642) | |
| cty (0.10408) |