Ss1.1-Pig4-TMW8023D14.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGCGCGCGGGCACCGCTGACTGAGGCGTGCTAGAATTCCAGAACTGGAGAAGCAGGCGA GATGAAGACTCTGCTGCTCTTGGTGGGGCTGCTGCTGACCTGGGAGAATGGCCCCTGGGT GCTGGGGGACAAGGCCATCTCCGACAAAGAGCTCCAGGAAATGTCCACCGAGGGGAGTAA GTACGTTAATAAAGAAATTAAAAATGCCCTCAAGGAGGTGAAACAGATAAAGACCCTAAT AGAACAATCAAATGAAGAGCGCAAATCACTGCTCAGCTCCCTGGAGGAAGCCAAGAAGAA GAAAGAGGATGCCCTGAACGATACCAGGGATACTGAGACAAAGCTGAAGGGATCCCAGGG CTTGTGCAATGAGACGATGATGGCCCTGTGGGAAGAGTGCAAGCCCTGCCTGAAACAGAC CTGCATGAAGTTCTACGCGCGTGTCTGCAGGAGCGGCTCGGGACTGGTTGGCCACCAGCT CGAGGAGTTCCTGAACCAGAGCTCCCCCTTCTACTTCTGGATCAACGGTGACCGCATCGA CTCCCTGATGGAGAACGACCGCCAGCAGAGCCACGTGATGGACATCATGGAGGACAGCTT CAACCGGGCGTCCAACATTATGGATGAGCTCTTCCAGGACCGCTTCTTTAACCGGGAGCC TTTCGACACTCAGTTCTTCTCACCCTTTGGCTCATCCCACAGGGGCTCGCTCTTCTTCAA CCCCAAGTCCCGCTTCGCCCGGAACATCATGCCTTTCCCCCTGTTCACAGACCTGAATTA CCATGACATGTTCCAGCCCTTCTTTGACATGATCCACCAGGCCCAGCAGGCCATGGATGC CCACCTTCATAGAATTCCCTATCACTTCCCTGAGGCGGGAGTCCCAGAAAACAGCAATGA CCGAGCTGTGTGCAAGGAGATCCGCCACAACTCCACGGGATGCCTGAGGATGAAGGACCA GTGTGAGAAGTGCCGGGAGATCTTGTCAGTTGACTGTTCGGCCAGCAATTCCTCTCAGAT GCAGCTGCGTCAGGAGCTGTACACGTCCCTGCAGATGGCGGAGAAGTTCAGCAAGCTCTA CGACCAGCTGCTCCAGTCCTACCAGCAGAAGATGCTTAACACGTCCTCCCTGCTGAAGCA GCTCAACGAGCAGTTCAGCTGGGTGTCCCAGCTGGCCAACCTCACGCAGAATGACGACCG CTACTATCTCCAGGTCACCACGGTGAATTCCCACGGCTCCGACCCCAGCGTGCCCTCTGG CCTCACTAAGGTGGTGGTGAAGCTCTTTGATTCCTACCCCATCACTCTGATTATCCCGCA GGAAGTCTCCGATCCTAAATTCATGGAGACTGTGGCGGAGGAAGCGCTACAGCAGTACCG CCAAAGGAGCCGGGAGGAGTGAGAGGTGAACCTCACGTTTCTAAGGATGGGGGCATCTGC GTCCAGTTGCCCCCTGAGTTGAGCCATAGGCCTCTAGAGAGAGCTCTGCGTGTCACCAGC TGACCAGGCCCTGGGCGCCAGGCCCTCCTGACCCCACCCAGCCTCTCCTCCCTCTGGATT CTGCACGCTAACACCTGCCTTTGCTGATCACAGGAAGAAATTTCCCGTGTGCCACTAACT CAGTAAACCGCCTTGGAATCTGAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGCGCGCGGGCACCGCTGACTGAGGCGTGCTAGAATTCCAGAACTGGAGAAGCAGGCGA GATGAAGACTCTGCTGCTCTTGGTGGGGCTGCTGCTGACCTGGGAGAATGGCCCCTGGGT GCTGGGGGACAAGGCCATCTCCGACAAAGAGCTCCAGGAAATGTCCACCGAGGGGAGTAA GTACGTTAATAAAGAAATTAAAAATGCCCTCAAGGAGGTGAAACAGATAAAGACCCTAAT AGAACAATCAAATGAAGAGCGCAAATCACTGCTCAGCTCCCTGGAGGAAGCCAAGAAGAA GAAAGAGGATGCCCTGAACGATACCAGGGATACTGAGACAAAGCTGAAGGGATCCCAGGG CTTGTGCAATGAGACGATGATGGCCCTGTGGGAAGAGTGCAAGCCCTGCCTGAAACAGAC CTGCATGAAGTTCTACGCGCGTGTCTGCAGGAGCGGCTCGGGACTGGTTGGCCACCAGCT CGAGGAGTTCCTGAACCAGAGCTCCCCCTTCTACTTCTGGATCAACGGTGACCGCATCGA CTCCCTGATGGAGAACGACCGCCAGCAGAGCCACGTGATGGACATCATGGAGGACAGCTT CAACCGGGCGTCCAACATTATGGATGAGCTCTTCCAGGACCGCTTCTTTAACCGGGAGCC TTTCGACACTCAGTTCTTCTCACCCTTTGGCTCATCCCACAGGGGCTCGCTCTTCTTCAA CCCCAAGTCCCGCTTCGCCCGGAACATCATGCCTTTCCCCCTGTTCACAGACCTGAATTA CCATGACATGTTCCAGCCCTTCTTTGACATGATCCACCAGGCCCAGCAGGCCATGGATGC CCACCTTCATAGAATTCCCTATCACTTCCCTGAGGCGGGAGTCCCAGAAAACAGCAATGA CCGAGCTGTGTGCAAGGAGATCCGCCACAACTCCACGGGATGCCTGAGGATGAAGGACCA GTGTGAGAAGTGCCGGGAGATCTTGTCAGTTGACTGTTCGGCCAGCAATTCCTCTCAGAT GCAGCTGCGTCAGGAGCTGTACACGTCCCTGCAGATGGCGGAGAAGTTCAGCAAGCTCTA CGACCAGCTGCTCCAGTCCTACCAGCAGAAGATGCTTAACACGTCCTCCCTGCTGAAGCA GCTCAACGAGCAGTTCAGCTGGGTGTCCCAGCTGGCCAACCTCACGCAGAATGACGACCG CTACTATCTCCAGGTCACCACGGTGAATTCCCACGGCTCCGACCCCAGCGTGCCCTCTGG CCTCACTAAGGTGGTGGTGAAGCTCTTTGATTCCTACCCCATCACTCTGATTATCCCGCA GGAAGTCTCCGATCCTAAATTCATGGAGACTGTGGCGGAGGAAGCGCTACAGCAGTACCG CCAAAGGAGCCGGGAGGAGTGAGAGGTGAACCTCACGTTTCTAAGGATGGGGGCATCTGC GTCCAGTTGCCCCCTGAGTTGAGCCATAGGCCTCTAGAGAGAGCTCTGCGTGTCACCAGC TGACCAGGCCCTGGGCGCCAGGCCCTCCTGACCCCACCCAGCCTCTCCTCCCTCTGGATT CTGCACGCTAACACCTGCCTTTGCTGATCACAGGAAGAAATTTCCCGTGTGCCACTAACT CAGTAAACCGCCTTGGAATCTGAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 76 entry(ies) | More info |
| Aligned organism(s): 76 entry(ies) | Help | Less info |
| 158-308, gnl|bosTau2|chr5 (33841801-33841951) | |
| 158-308, gnl|canFam2|chr25 (32976839-32976655) | |
| 158-308, gnl|danRer3|chr20 (46239183-46239345) | |
| 158-308, gnl|dasNov1|scaffold_6288 (69366-69185) | |
| 158-308, gnl|echTel1|scaffold_286703 (1979-1795) | |
| 158-308, gnl|fr1|chrUn (318635191-318635004) | |
| 158-308, gnl|hg17|chr8 (27522367-27522550) | |
| 158-308, gnl|Hg17|chr8 (27522521-27522371) | |
| 158-308, gnl|mm7|chr14 (60833944-60833764) | |
| 158-308, gnl|Mm7|chr14 (60833788-60833938) | |
| 158-308, gnl|monDom2|scaffold_1 (153420832-153421018) | |
| 158-308, gnl|oryCun1|scaffold_196173 (22336-22153) | |
| 158-308, gnl|panTro1|chr7 (28495504-28495687) | |
| 158-308, gnl|rheMac2|chr8 (27755580-27755763) | |
| 158-308, gnl|rn3|chr15 (45413254-45413074) | |
| 158-308, gnl|tetNig1|chr14 (2046606-2046773) | |
| 158-308, gnl|xenTro1|scaffold_6108 (4036-4204) | |
| 312-478, gnl|bosTau2|chr5 (33844303-33844469) | |
| 312-478, gnl|canFam2|chr25 (32979645-32979417) | |
| 312-478, gnl|danRer3|chr20 (46237068-46237295) | |
| 312-478, gnl|dasNov1|scaffold_6288 (72084-71830) | |
| 312-478, gnl|echTel1|scaffold_286703 (5311-5094) | |
| 312-478, gnl|fr1|chrUn (318635495-318635281) | |
| 312-478, gnl|hg17|chr8 (27519775-27520006) | |
| 312-478, gnl|Hg17|chr8 (27519954-27519788) | |
| 312-478, gnl|loxAfr1|scaffold_14288 (30706-30930) | |
| 312-478, gnl|mm7|chr14 (60835492-60835255) | |
| 312-478, gnl|Mm7|chr14 (60835311-60835477) | |
| 312-478, gnl|monDom2|scaffold_1 (153417323-153417535) | |
| 312-478, gnl|oryCun1|scaffold_196173 (24107-23875) | |
| 312-478, gnl|panTro1|chr7 (28492811-28493042) | |
| 312-478, gnl|rheMac2|chr8 (27752672-27752902) | |
| 312-478, gnl|rn3|chr15 (45414804-45414570) | |
| 312-478, gnl|tetNig1|chr14 (2046327-2046506) | |
| 312-478, gnl|xenTro1|scaffold_6108 (2833-3051) | |
| 882-990, gnl|bosTau2|chr8 (7981486-7981591) | |
| 882-990, gnl|Hg17|chr8 (27517835-27517727) | |
| 882-990, gnl|Mm7|chr14 (60837364-60837472) | |
| 883-984, gnl|bosTau2|chr5 (33848025-33848123) | |
| 883-984, gnl|canFam2|chr25 (32982929-32982790) | |
| 883-984, gnl|danRer3|chr20 (46233313-46233429) | |
| 883-984, gnl|echTel1|scaffold_311686 (6500-6647) | |
| 883-984, gnl|fr1|chrUn (318636260-318636130) | |
| 883-984, gnl|hg17|chr8 (27517709-27517855) | |
| 883-984, gnl|Hg17|chr8 (27517834-27517733) | |
| 883-984, gnl|loxAfr1|scaffold_14288 (27959-28108) | |
| 883-984, gnl|mm7|chr14 (60837493-60837348) | |
| 883-984, gnl|Mm7|chr14 (60837367-60837466) | |
| 883-984, gnl|monDom2|scaffold_1 (153412562-153412697) | |
| 883-984, gnl|oryCun1|scaffold_196173 (26229-26082) | |
| 883-984, gnl|panTro1|chr7 (28490749-28490895) | |
| 883-984, gnl|rheMac2|chr8 (27750606-27750752) | |
| 883-984, gnl|rn3|chr15 (45416774-45416630) | |
| 883-984, gnl|tetNig1|chr14 (2045568-2045673) | |
| 883-984, gnl|xenTro1|scaffold_1280 (140561-140455) | |
| 992-1224, gnl|bosTau2|chr5 (33851630-33851862) | |
| 992-1224, gnl|Hg17|chr8 (27513444-27513212) | |
| 992-1224, gnl|Mm7|chr14 (60840114-60840346) | |
| 1236-1391, gnl|bosTau2|chr5 (33852569-33852724) | |
| 1236-1391, gnl|canFam2|chr25 (32987413-32987259) | |
| 1236-1391, gnl|fr1|chrUn (318636852-318636702) | |
| 1236-1391, gnl|hg17|chr8 (27511890-27512044) | |
| 1236-1391, gnl|Hg17|chr8 (27512055-27511895) | |
| 1236-1391, gnl|loxAfr1|scaffold_14288 (22364-22524) | |
| 1236-1391, gnl|mm7|chr14 (60841499-60841345) | |
| 1236-1391, gnl|Mm7|chr14 (60841331-60841492) | |
| 1236-1391, gnl|monDom2|scaffold_1 (153406512-153406672) | |
| 1236-1391, gnl|oryCun1|scaffold_196173 (32313-32159) | |
| 1236-1391, gnl|panTro1|chr7 (28484877-28485031) | |
| 1236-1391, gnl|rheMac2|chr8 (27744777-27744931) | |
| 1236-1391, gnl|rn3|chr15 (45420582-45420428) | |
| 1236-1391, gnl|tetNig1|chr14 (2044856-2044982) | |
| 1236-1391, gnl|xenTro1|scaffold_1280 (142007-141856) | |
| 1392-1644, gnl|bosTau2|chr5 (33852971-33853226) | |
| 1392-1644, gnl|Hg17|chr8 (27511685-27511447) | |
| 1392-1644, gnl|Mm7|chr14 (60841770-60842011) |
| Aligned organism(s): 76 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 158-308, gnl|bosTau2|chr5 (33841801-33841951) | |
| 158-308, gnl|canFam2|chr25 (32976839-32976655) | |
| 158-308, gnl|danRer3|chr20 (46239183-46239345) | |
| 158-308, gnl|dasNov1|scaffold_6288 (69366-69185) | |
| 158-308, gnl|echTel1|scaffold_286703 (1979-1795) | |
| 158-308, gnl|fr1|chrUn (318635191-318635004) | |
| 158-308, gnl|hg17|chr8 (27522367-27522550) | |
| 158-308, gnl|Hg17|chr8 (27522521-27522371) | |
| 158-308, gnl|mm7|chr14 (60833944-60833764) | |
| 158-308, gnl|Mm7|chr14 (60833788-60833938) | |
| 158-308, gnl|monDom2|scaffold_1 (153420832-153421018) | |
| 158-308, gnl|oryCun1|scaffold_196173 (22336-22153) | |
| 158-308, gnl|panTro1|chr7 (28495504-28495687) | |
| 158-308, gnl|rheMac2|chr8 (27755580-27755763) | |
| 158-308, gnl|rn3|chr15 (45413254-45413074) | |
| 158-308, gnl|tetNig1|chr14 (2046606-2046773) | |
| 158-308, gnl|xenTro1|scaffold_6108 (4036-4204) | |
| 312-478, gnl|bosTau2|chr5 (33844303-33844469) | |
| 312-478, gnl|canFam2|chr25 (32979645-32979417) | |
| 312-478, gnl|danRer3|chr20 (46237068-46237295) | |
| 312-478, gnl|dasNov1|scaffold_6288 (72084-71830) | |
| 312-478, gnl|echTel1|scaffold_286703 (5311-5094) | |
| 312-478, gnl|fr1|chrUn (318635495-318635281) | |
| 312-478, gnl|hg17|chr8 (27519775-27520006) | |
| 312-478, gnl|Hg17|chr8 (27519954-27519788) | |
| 312-478, gnl|loxAfr1|scaffold_14288 (30706-30930) | |
| 312-478, gnl|mm7|chr14 (60835492-60835255) | |
| 312-478, gnl|Mm7|chr14 (60835311-60835477) | |
| 312-478, gnl|monDom2|scaffold_1 (153417323-153417535) | |
| 312-478, gnl|oryCun1|scaffold_196173 (24107-23875) | |
| 312-478, gnl|panTro1|chr7 (28492811-28493042) | |
| 312-478, gnl|rheMac2|chr8 (27752672-27752902) | |
| 312-478, gnl|rn3|chr15 (45414804-45414570) | |
| 312-478, gnl|tetNig1|chr14 (2046327-2046506) | |
| 312-478, gnl|xenTro1|scaffold_6108 (2833-3051) | |
| 882-990, gnl|bosTau2|chr8 (7981486-7981591) | |
| 882-990, gnl|Hg17|chr8 (27517835-27517727) | |
| 882-990, gnl|Mm7|chr14 (60837364-60837472) | |
| 883-984, gnl|bosTau2|chr5 (33848025-33848123) | |
| 883-984, gnl|canFam2|chr25 (32982929-32982790) | |
| 883-984, gnl|danRer3|chr20 (46233313-46233429) | |
| 883-984, gnl|echTel1|scaffold_311686 (6500-6647) | |
| 883-984, gnl|fr1|chrUn (318636260-318636130) | |
| 883-984, gnl|hg17|chr8 (27517709-27517855) | |
| 883-984, gnl|Hg17|chr8 (27517834-27517733) | |
| 883-984, gnl|loxAfr1|scaffold_14288 (27959-28108) | |
| 883-984, gnl|mm7|chr14 (60837493-60837348) | |
| 883-984, gnl|Mm7|chr14 (60837367-60837466) | |
| 883-984, gnl|monDom2|scaffold_1 (153412562-153412697) | |
| 883-984, gnl|oryCun1|scaffold_196173 (26229-26082) | |
| 883-984, gnl|panTro1|chr7 (28490749-28490895) | |
| 883-984, gnl|rheMac2|chr8 (27750606-27750752) | |
| 883-984, gnl|rn3|chr15 (45416774-45416630) | |
| 883-984, gnl|tetNig1|chr14 (2045568-2045673) | |
| 883-984, gnl|xenTro1|scaffold_1280 (140561-140455) | |
| 992-1224, gnl|bosTau2|chr5 (33851630-33851862) | |
| 992-1224, gnl|Hg17|chr8 (27513444-27513212) | |
| 992-1224, gnl|Mm7|chr14 (60840114-60840346) | |
| 1236-1391, gnl|bosTau2|chr5 (33852569-33852724) | |
| 1236-1391, gnl|canFam2|chr25 (32987413-32987259) | |
| 1236-1391, gnl|fr1|chrUn (318636852-318636702) | |
| 1236-1391, gnl|hg17|chr8 (27511890-27512044) | |
| 1236-1391, gnl|Hg17|chr8 (27512055-27511895) | |
| 1236-1391, gnl|loxAfr1|scaffold_14288 (22364-22524) | |
| 1236-1391, gnl|mm7|chr14 (60841499-60841345) | |
| 1236-1391, gnl|Mm7|chr14 (60841331-60841492) | |
| 1236-1391, gnl|monDom2|scaffold_1 (153406512-153406672) | |
| 1236-1391, gnl|oryCun1|scaffold_196173 (32313-32159) | |
| 1236-1391, gnl|panTro1|chr7 (28484877-28485031) | |
| 1236-1391, gnl|rheMac2|chr8 (27744777-27744931) | |
| 1236-1391, gnl|rn3|chr15 (45420582-45420428) | |
| 1236-1391, gnl|tetNig1|chr14 (2044856-2044982) | |
| 1236-1391, gnl|xenTro1|scaffold_1280 (142007-141856) | |
| 1392-1644, gnl|bosTau2|chr5 (33852971-33853226) | |
| 1392-1644, gnl|Hg17|chr8 (27511685-27511447) | |
| 1392-1644, gnl|Mm7|chr14 (60841770-60842011) |
| Expressed library(ies): 44 entry(ies) | More info |
| Expressed library(ies): 44 entry(ies) | Help | Less info |
| hyp (6.57049) | |
| cli (4.12592) | |
| jca (3.76068) | |
| fcc (3.36234) | |
| fhi (3.0524) | |
| cly (2.65412) | |
| cov (2.5109) | |
| fbs (2.45485) | |
| fce (2.44432) | |
| cag (1.81433) | |
| pgl (1.4218) | |
| csp (1.28949) | |
| lnt (1.28077) | |
| eli (1.21451) | |
| cty (1.0408) | |
| clu (0.957167) | |
| ebs (0.94641) | |
| hlv (0.696282) | |
| ecc (0.690211) | |
| ece (0.687916) | |
| mcp (0.682594) | |
| ute (0.663922) | |
| fli (0.608643) | |
| cga (0.558191) | |
| ill (0.526778) | |
| cbr (0.511902) | |
| nbm (0.397298) | |
| elu (0.385356) | |
| nlu (0.383362) | |
| ton (0.351) | |
| med (0.348756) | |
| eye (0.341006) | |
| nca (0.273748) | |
| nmm (0.265604) | |
| nms (0.213858) | |
| nep (0.183925) | |
| fty (0.17584) | |
| sin (0.174948) | |
| nje (0.16592) | |
| cki (0.165235) | |
| nco (0.161734) | |
| mga (0.160205) | |
| tra (0.123092) | |
| cbl (0.114797) |
| Expressed library(ies): 44 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hyp (6.57049) | |
| cli (4.12592) | |
| jca (3.76068) | |
| fcc (3.36234) | |
| fhi (3.0524) | |
| cly (2.65412) | |
| cov (2.5109) | |
| fbs (2.45485) | |
| fce (2.44432) | |
| cag (1.81433) | |
| pgl (1.4218) | |
| csp (1.28949) | |
| lnt (1.28077) | |
| eli (1.21451) | |
| cty (1.0408) | |
| clu (0.957167) | |
| ebs (0.94641) | |
| hlv (0.696282) | |
| ecc (0.690211) | |
| ece (0.687916) | |
| mcp (0.682594) | |
| ute (0.663922) | |
| fli (0.608643) | |
| cga (0.558191) | |
| ill (0.526778) | |
| cbr (0.511902) | |
| nbm (0.397298) | |
| elu (0.385356) | |
| nlu (0.383362) | |
| ton (0.351) | |
| med (0.348756) | |
| eye (0.341006) | |
| nca (0.273748) | |
| nmm (0.265604) | |
| nms (0.213858) | |
| nep (0.183925) | |
| fty (0.17584) | |
| sin (0.174948) | |
| nje (0.16592) | |
| cki (0.165235) | |
| nco (0.161734) | |
| mga (0.160205) | |
| tra (0.123092) | |
| cbl (0.114797) |