Ss1.1-Pig4-TMW8023D16.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCGCTGCGGGCTGGAGGCAGGTTGAAGGGTCTTCCAGCCTCCGTAGGGAATCCGTGCCC CAGCGGCCTTTAAGCCAGGCGGGCAAGTGAGTCGTAGCGCAATCGAGCGAGCTGGGCGGC GGCGTGGCGCCGTTGAGGGCGCTACCCCGCGCGCTCCTAGGCCGCCCCGGGTCCTGGGCT CCTCGAAGGAGGATCAGCGCCCGGGGCTGAAGAGCGGGGGCGTAGGGAGGCTCTGCCGTC GTTCAAGCTCGTAGCGGCGTCTGGAGCCGGAGGTTGGCGCCTGGGGTCGGGAACTGAGTC TTGGGCGCTGCTCGCCGGAGCGGAGATCCGGGTTTGCCCCCTGCCCCCCGCTCAGGACCG AGACGCGGGTGAGGCGACCCTGGGAGCATGAGCGGGCAGCGCGTGGACGTCAAGGTGGTG ATGCTGGGAAAGGAGTACGTGGGCAAGACCAGCCTGGTGGAGCGATATGTGCACGACCGC TTCCTGGTGGGGCCCTATCAGAACACCATTGGGGCCGCCTTCGTGGCCAAGGTGATGTCC GTGGGGGACCGGACGGTGACTTTGGGTATTTGGGACACAGCAGGCTCTGAGCGCTATGAG GCCATGAGCCGAATCTACTACCGGGGCGCCAAGGCTGCCATCGTCTGCTATGACCTGACA GACAGCAGCAGCTTTGAACGGGCAAAGTTTTGGGTGAAAGAACTGCGCAACCTAGAGGAG GGTTGTCAGATCTACTTATGTGGCACCAAGAGTGATCTGCTGGAGGAGGACAGAAGGCGT CGACGTGTGGACTTCCACGACGTCCAGGACTATGCAGACAATATCAAAGCTCAGCTCTTT GAAACATCCAGCAAGACAGGCCAAAGCGTGGACGAGCTCTTCCAGAAAGTGGCAGAAGAT TACGTCAGTGTGGCTGCCTTCCAGGTGATGACAGAGGACAAGGGAGTGGACCTGGGCCAG AAGGCAAACCCCTACTTCTACAGCTGTTGTCACCACTGAGTCACCATTCACCTGGCCTGG GGGAATTAAAGGAACTCCCCCAGAGAGGCTGGACCTAGCTCTTGTCTGGGCTTGGGTGAT CAAACGTCTGAGCTACCCCGGGGCCCCATGGCAGCAGAGGTGGCACCTGCCTGTGCTGGC CCATGGAAGAGAGGCAGCATTGGACTGACTGAGGGGCACAAGGAGGATAAGGGCTGATTT GGATCTCAGACTTCTGCCCTGGACGTGTCTACAGATTAAGTGGCTTCTGATTTGTAAATA AAATCAATGCACTGTGAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCGCTGCGGGCTGGAGGCAGGTTGAAGGGTCTTCCAGCCTCCGTAGGGAATCCGTGCCC CAGCGGCCTTTAAGCCAGGCGGGCAAGTGAGTCGTAGCGCAATCGAGCGAGCTGGGCGGC GGCGTGGCGCCGTTGAGGGCGCTACCCCGCGCGCTCCTAGGCCGCCCCGGGTCCTGGGCT CCTCGAAGGAGGATCAGCGCCCGGGGCTGAAGAGCGGGGGCGTAGGGAGGCTCTGCCGTC GTTCAAGCTCGTAGCGGCGTCTGGAGCCGGAGGTTGGCGCCTGGGGTCGGGAACTGAGTC TTGGGCGCTGCTCGCCGGAGCGGAGATCCGGGTTTGCCCCCTGCCCCCCGCTCAGGACCG AGACGCGGGTGAGGCGACCCTGGGAGCATGAGCGGGCAGCGCGTGGACGTCAAGGTGGTG ATGCTGGGAAAGGAGTACGTGGGCAAGACCAGCCTGGTGGAGCGATATGTGCACGACCGC TTCCTGGTGGGGCCCTATCAGAACACCATTGGGGCCGCCTTCGTGGCCAAGGTGATGTCC GTGGGGGACCGGACGGTGACTTTGGGTATTTGGGACACAGCAGGCTCTGAGCGCTATGAG GCCATGAGCCGAATCTACTACCGGGGCGCCAAGGCTGCCATCGTCTGCTATGACCTGACA GACAGCAGCAGCTTTGAACGGGCAAAGTTTTGGGTGAAAGAACTGCGCAACCTAGAGGAG GGTTGTCAGATCTACTTATGTGGCACCAAGAGTGATCTGCTGGAGGAGGACAGAAGGCGT CGACGTGTGGACTTCCACGACGTCCAGGACTATGCAGACAATATCAAAGCTCAGCTCTTT GAAACATCCAGCAAGACAGGCCAAAGCGTGGACGAGCTCTTCCAGAAAGTGGCAGAAGAT TACGTCAGTGTGGCTGCCTTCCAGGTGATGACAGAGGACAAGGGAGTGGACCTGGGCCAG AAGGCAAACCCCTACTTCTACAGCTGTTGTCACCACTGAGTCACCATTCACCTGGCCTGG GGGAATTAAAGGAACTCCCCCAGAGAGGCTGGACCTAGCTCTTGTCTGGGCTTGGGTGAT CAAACGTCTGAGCTACCCCGGGGCCCCATGGCAGCAGAGGTGGCACCTGCCTGTGCTGGC CCATGGAAGAGAGGCAGCATTGGACTGACTGAGGGGCACAAGGAGGATAAGGGCTGATTT GGATCTCAGACTTCTGCCCTGGACGTGTCTACAGATTAAGTGGCTTCTGATTTGTAAATA AAATCAATGCACTGTGAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1009-1167, + strand, RNAz p=0.967276 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1009-1167, + strand, RNAz p=0.967276 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of AF258583, + |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 1-503, gnl|bosTau2|chr7 (21501532-21501035) | |
| 1-503, gnl|Hg17|chr5 (176663300-176662780) | |
| 1-503, gnl|Mm7|chr13 (54402162-54401761) | |
| 719-823, gnl|bosTau2|chr7 (21500329-21500225) | |
| 719-823, gnl|canFam2|chr4 (39247613-39247474) | |
| 719-823, gnl|danRer3|chr21 (36021826-36021973) | |
| 719-823, gnl|dasNov1|scaffold_17924 (16336-16476) | |
| 719-823, gnl|echTel1|scaffold_315735 (1166-1028) | |
| 719-823, gnl|fr1|chrUn (215044993-215045134) | |
| 719-823, gnl|galGal2|chr13 (9090219-9090401) | |
| 719-823, gnl|hg17|chr5 (176661982-176662122) | |
| 719-823, gnl|Hg17|chr5 (176662105-176662001) | |
| 719-823, gnl|loxAfr1|scaffold_15651 (17316-17177) | |
| 719-823, gnl|mm7|chr13 (54400945-54401085) | |
| 719-823, gnl|Mm7|chr13 (54401068-54400964) | |
| 719-823, gnl|monDom2|scaffold_6 (17519272-17519131) | |
| 719-823, gnl|oryCun1|scaffold_203910 (55265-55405) | |
| 719-823, gnl|panTro1|chr4 (184135360-184135500) | |
| 719-823, gnl|rheMac2|chr6 (173824913-173825053) | |
| 719-823, gnl|rn3|chr17 (15354456-15354316) | |
| 719-823, gnl|tetNig1|chr7 (10266284-10266149) | |
| 719-823, gnl|xenTro1|scaffold_235 (1158617-1158745) | |
| 929-1278, gnl|bosTau2|chr7 (21499665-21499314) | |
| 929-1278, gnl|Hg17|chr5 (176661420-176661063) | |
| 929-1278, gnl|Mm7|chr13 (54400361-54400030) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-503, gnl|bosTau2|chr7 (21501532-21501035) | |
| 1-503, gnl|Hg17|chr5 (176663300-176662780) | |
| 1-503, gnl|Mm7|chr13 (54402162-54401761) | |
| 719-823, gnl|bosTau2|chr7 (21500329-21500225) | |
| 719-823, gnl|canFam2|chr4 (39247613-39247474) | |
| 719-823, gnl|danRer3|chr21 (36021826-36021973) | |
| 719-823, gnl|dasNov1|scaffold_17924 (16336-16476) | |
| 719-823, gnl|echTel1|scaffold_315735 (1166-1028) | |
| 719-823, gnl|fr1|chrUn (215044993-215045134) | |
| 719-823, gnl|galGal2|chr13 (9090219-9090401) | |
| 719-823, gnl|hg17|chr5 (176661982-176662122) | |
| 719-823, gnl|Hg17|chr5 (176662105-176662001) | |
| 719-823, gnl|loxAfr1|scaffold_15651 (17316-17177) | |
| 719-823, gnl|mm7|chr13 (54400945-54401085) | |
| 719-823, gnl|Mm7|chr13 (54401068-54400964) | |
| 719-823, gnl|monDom2|scaffold_6 (17519272-17519131) | |
| 719-823, gnl|oryCun1|scaffold_203910 (55265-55405) | |
| 719-823, gnl|panTro1|chr4 (184135360-184135500) | |
| 719-823, gnl|rheMac2|chr6 (173824913-173825053) | |
| 719-823, gnl|rn3|chr17 (15354456-15354316) | |
| 719-823, gnl|tetNig1|chr7 (10266284-10266149) | |
| 719-823, gnl|xenTro1|scaffold_235 (1158617-1158745) | |
| 929-1278, gnl|bosTau2|chr7 (21499665-21499314) | |
| 929-1278, gnl|Hg17|chr5 (176661420-176661063) | |
| 929-1278, gnl|Mm7|chr13 (54400361-54400030) |
| Expressed library(ies): 20 entry(ies) | More info |
| Expressed library(ies): 20 entry(ies) | Help | Less info |
| jej (0.395687) | |
| fbs (0.350693) | |
| cga (0.279096) | |
| hlv (0.278513) | |
| fcc (0.197785) | |
| col (0.195008) | |
| fty (0.17584) | |
| mcp (0.170648) | |
| nje (0.16592) | |
| cli (0.152812) | |
| hyp (0.142837) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| bla (0.124347) | |
| cly (0.120642) | |
| eru (0.120048) | |
| med (0.116252) | |
| nbm (0.0993246) | |
| eje (0.0988338) |
| Expressed library(ies): 20 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| jej (0.395687) | |
| fbs (0.350693) | |
| cga (0.279096) | |
| hlv (0.278513) | |
| fcc (0.197785) | |
| col (0.195008) | |
| fty (0.17584) | |
| mcp (0.170648) | |
| nje (0.16592) | |
| cli (0.152812) | |
| hyp (0.142837) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| bla (0.124347) | |
| cly (0.120642) | |
| eru (0.120048) | |
| med (0.116252) | |
| nbm (0.0993246) | |
| eje (0.0988338) |