Ss1.1-Pig4-TMW8023D17.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATAATGATCATCTTGATGACTTTAAAGCTGCAGAATATGCTTGGCAGAAACACAAGCAGC TCAATGAATCTATCATTGTTGCACTTTTTCAGGGTCAGTTTAAATCCACAGTACAGTGCC TCACTTGTCACAAAAAGTCTAGGACATTTGAGGCCTTCATGTATTTGTCTCTACCACTAG CATCTACAAGTAAATGTACATTACAGGATTGCCTTAGATTATTTTCCAAAGAAGAAAAAC TCACAGATAACAACAGGTTTTACTGCAGTCATTGCAGAGCTCGACGGGATTCCCTAAAAA AGATAGAAATCTGGAAGTTGCCACCTGTACTTTTAGTGCATCTGAAACGTTTTTCCTATG ATGGTAGGTGGAAGCAAAAATTACAGACATCTGTGGACTTCCCGTTAGAAAATCTTGACT TGGCACAGTATGTTATTGGTCCAAAGAACAATTTAAAGAAATACAATTTATTTTCTGTTT CGAATCACTATGGTGGACTGGATGGAGGTCACTACACTGCCTATTGTAAAAATGCAGCAA GACAGCGATGGTTTAAATTTGATGATCACGAAGTTTCTGATATCTCCATTTCTTCTGTGA AATCTTCAGCAGCTTATATCCTCTTTTATACGTCATTGGGACCACGAGTAACTGATGTTG CCACATAAGGAGAAGTAGGTTATAAGCTAGTTATCTTTTAACAGGCTGAGCAATACAGCC CTTGAAATGCTTATAAAGATACCGGATCGCTATGGCTGGCCATGTAAGGGAATTCTAGGA CAGTGAGAGCTGTGTTACTATCACCATATATTTTAGGTCAGTGCTATTAATCAAAAATCT GACCAGTAAAATTTAACAAGTATTGCAGTAAGCATTCCTGACAGGTACCATTTATTTCAA AAAAACTTTTTAAGTTTGCTCTAGAGTTAAAATAATTAACTAGCTAAGCATTATTATTCT GCTGGTCTAAAAACCATTGTATCCTTTATTTTCCGTTTCACTGTTATGGCCTTTTCACAT TTCCAAATCTCAGCTTGATCTATGAATACTCTAGAATGATGTAAAGCAGATAGGAATGTA TGTGTATATATTTATTGCACACTTGCACATCAAATCGATGTACATAGTATAATATGTGGT CCTTTTGTGAAGCCTAGATCTCAGAGGATTGCTTTTTTTTTCTTCCTTTTGGCCTATCCT GAGTAACTGCAGTGCTTTCTTAGGGAAATGACAGGGCAAAGCTCTTTTTCTGTTGGCTTT GGGCTGTATTTGTGCACTAAACCTTTATTCTAAAAAAATAAATGGAAACTTTTCTTTAAT TTTTTAAAATGAGAATTTTCATTTACACCTACATTAAAATCTTAATGAGAAAAATAATTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATAATGATCATCTTGATGACTTTAAAGCTGCAGAATATGCTTGGCAGAAACACAAGCAGC TCAATGAATCTATCATTGTTGCACTTTTTCAGGGTCAGTTTAAATCCACAGTACAGTGCC TCACTTGTCACAAAAAGTCTAGGACATTTGAGGCCTTCATGTATTTGTCTCTACCACTAG CATCTACAAGTAAATGTACATTACAGGATTGCCTTAGATTATTTTCCAAAGAAGAAAAAC TCACAGATAACAACAGGTTTTACTGCAGTCATTGCAGAGCTCGACGGGATTCCCTAAAAA AGATAGAAATCTGGAAGTTGCCACCTGTACTTTTAGTGCATCTGAAACGTTTTTCCTATG ATGGTAGGTGGAAGCAAAAATTACAGACATCTGTGGACTTCCCGTTAGAAAATCTTGACT TGGCACAGTATGTTATTGGTCCAAAGAACAATTTAAAGAAATACAATTTATTTTCTGTTT CGAATCACTATGGTGGACTGGATGGAGGTCACTACACTGCCTATTGTAAAAATGCAGCAA GACAGCGATGGTTTAAATTTGATGATCACGAAGTTTCTGATATCTCCATTTCTTCTGTGA AATCTTCAGCAGCTTATATCCTCTTTTATACGTCATTGGGACCACGAGTAACTGATGTTG CCACATAAGGAGAAGTAGGTTATAAGCTAGTTATCTTTTAACAGGCTGAGCAATACAGCC CTTGAAATGCTTATAAAGATACCGGATCGCTATGGCTGGCCATGTAAGGGAATTCTAGGA CAGTGAGAGCTGTGTTACTATCACCATATATTTTAGGTCAGTGCTATTAATCAAAAATCT GACCAGTAAAATTTAACAAGTATTGCAGTAAGCATTCCTGACAGGTACCATTTATTTCAA AAAAACTTTTTAAGTTTGCTCTAGAGTTAAAATAATTAACTAGCTAAGCATTATTATTCT GCTGGTCTAAAAACCATTGTATCCTTTATTTTCCGTTTCACTGTTATGGCCTTTTCACAT TTCCAAATCTCAGCTTGATCTATGAATACTCTAGAATGATGTAAAGCAGATAGGAATGTA TGTGTATATATTTATTGCACACTTGCACATCAAATCGATGTACATAGTATAATATGTGGT CCTTTTGTGAAGCCTAGATCTCAGAGGATTGCTTTTTTTTTCTTCCTTTTGGCCTATCCT GAGTAACTGCAGTGCTTTCTTAGGGAAATGACAGGGCAAAGCTCTTTTTCTGTTGGCTTT GGGCTGTATTTGTGCACTAAACCTTTATTCTAAAAAAATAAATGGAAACTTTTCTTTAAT TTTTTAAAATGAGAATTTTCATTTACACCTACATTAAAATCTTAATGAGAAAAATAATTT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 1-207, gnl|bosTau2|chr3 (16109004-16108798) | |
| 1-207, gnl|canFam2|chr30 (19395164-19395422) | |
| 1-207, gnl|canFam2|chr30 (19395180-19395414) | |
| 1-207, gnl|danRer3|chr7 (20474716-20474959) | |
| 1-207, gnl|danRer3|chr7 (20474719-20474951) | |
| 1-207, gnl|dasNov1|scaffold_21442 (19487-19230) | |
| 1-207, gnl|dasNov1|scaffold_21442 (19471-19239) | |
| 1-207, gnl|echTel1|scaffold_100902 (3062-2804) | |
| 1-207, gnl|echTel1|scaffold_100902 (3046-2812) | |
| 1-207, gnl|fr1|chrUn (240431080-240430851) | |
| 1-207, gnl|galGal2|chr10 (11427661-11427396) | |
| 1-207, gnl|galGal2|chr10 (11427638-11427404) | |
| 1-207, gnl|hg17|chr15 (48575322-48575580) | |
| 1-207, gnl|Hg17|chr15 (48575368-48575574) | |
| 1-207, gnl|hg17|chr6 (31353818-31354052) | |
| 1-207, gnl|loxAfr1|scaffold_28307 (11770-11513) | |
| 1-207, gnl|loxAfr1|scaffold_28307 (11754-11521) | |
| 1-207, gnl|mm7|chr2 (126495689-126495945) | |
| 1-207, gnl|mm7|chr2 (126495703-126495937) | |
| 1-207, gnl|Mm7|chr2 (126495733-126495939) | |
| 1-207, gnl|monDom2|scaffold_12 (17953392-17953135) | |
| 1-207, gnl|monDom2|scaffold_12 (17953377-17953144) | |
| 1-207, gnl|oryCun1|scaffold_120800 (5071-4822) | |
| 1-207, gnl|oryCun1|scaffold_120800 (5064-4830) | |
| 1-207, gnl|panTro1|chr16 (48596502-48596760) | |
| 1-207, gnl|panTro1|chr5 (31834654-31834888) | |
| 1-207, gnl|rheMac2|chr7 (28810316-28810574) | |
| 1-207, gnl|rheMac2|chr7 (28810332-28810566) | |
| 1-207, gnl|rn3|chr3 (114185165-114185423) | |
| 1-207, gnl|rn3|chr3 (114185181-114185415) | |
| 1-207, gnl|tetNig1|chr5 (9760635-9760893) | |
| 1-207, gnl|tetNig1|chr5 (9760651-9760883) | |
| 1-207, gnl|xenTro1|scaffold_613 (680686-680946) | |
| 1-207, gnl|xenTro1|scaffold_613 (680705-680939) | |
| 325-481, gnl|bosTau2|chr3 (16106085-16105933) | |
| 325-481, gnl|Hg17|chr15 (48578067-48578216) | |
| 325-481, gnl|Mm7|chr2 (126498953-126499104) | |
| 482-1380, gnl|bosTau2|chr3 (16105763-16104870) | |
| 482-1380, gnl|Hg17|chr15 (48578391-48579268) | |
| 482-1380, gnl|Mm7|chr2 (126499273-126500156) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-207, gnl|bosTau2|chr3 (16109004-16108798) | |
| 1-207, gnl|canFam2|chr30 (19395164-19395422) | |
| 1-207, gnl|canFam2|chr30 (19395180-19395414) | |
| 1-207, gnl|danRer3|chr7 (20474716-20474959) | |
| 1-207, gnl|danRer3|chr7 (20474719-20474951) | |
| 1-207, gnl|dasNov1|scaffold_21442 (19487-19230) | |
| 1-207, gnl|dasNov1|scaffold_21442 (19471-19239) | |
| 1-207, gnl|echTel1|scaffold_100902 (3062-2804) | |
| 1-207, gnl|echTel1|scaffold_100902 (3046-2812) | |
| 1-207, gnl|fr1|chrUn (240431080-240430851) | |
| 1-207, gnl|galGal2|chr10 (11427661-11427396) | |
| 1-207, gnl|galGal2|chr10 (11427638-11427404) | |
| 1-207, gnl|hg17|chr15 (48575322-48575580) | |
| 1-207, gnl|Hg17|chr15 (48575368-48575574) | |
| 1-207, gnl|hg17|chr6 (31353818-31354052) | |
| 1-207, gnl|loxAfr1|scaffold_28307 (11770-11513) | |
| 1-207, gnl|loxAfr1|scaffold_28307 (11754-11521) | |
| 1-207, gnl|mm7|chr2 (126495689-126495945) | |
| 1-207, gnl|mm7|chr2 (126495703-126495937) | |
| 1-207, gnl|Mm7|chr2 (126495733-126495939) | |
| 1-207, gnl|monDom2|scaffold_12 (17953392-17953135) | |
| 1-207, gnl|monDom2|scaffold_12 (17953377-17953144) | |
| 1-207, gnl|oryCun1|scaffold_120800 (5071-4822) | |
| 1-207, gnl|oryCun1|scaffold_120800 (5064-4830) | |
| 1-207, gnl|panTro1|chr16 (48596502-48596760) | |
| 1-207, gnl|panTro1|chr5 (31834654-31834888) | |
| 1-207, gnl|rheMac2|chr7 (28810316-28810574) | |
| 1-207, gnl|rheMac2|chr7 (28810332-28810566) | |
| 1-207, gnl|rn3|chr3 (114185165-114185423) | |
| 1-207, gnl|rn3|chr3 (114185181-114185415) | |
| 1-207, gnl|tetNig1|chr5 (9760635-9760893) | |
| 1-207, gnl|tetNig1|chr5 (9760651-9760883) | |
| 1-207, gnl|xenTro1|scaffold_613 (680686-680946) | |
| 1-207, gnl|xenTro1|scaffold_613 (680705-680939) | |
| 325-481, gnl|bosTau2|chr3 (16106085-16105933) | |
| 325-481, gnl|Hg17|chr15 (48578067-48578216) | |
| 325-481, gnl|Mm7|chr2 (126498953-126499104) | |
| 482-1380, gnl|bosTau2|chr3 (16105763-16104870) | |
| 482-1380, gnl|Hg17|chr15 (48578391-48579268) | |
| 482-1380, gnl|Mm7|chr2 (126499273-126500156) |
| Expressed library(ies): 19 entry(ies) | More info |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
| rec (0.865351) | |
| isp (0.451128) | |
| liv (0.292569) | |
| spl (0.286369) | |
| cje (0.165235) | |
| ctl (0.153069) | |
| cag (0.151194) | |
| fat (0.147427) | |
| ski (0.146735) | |
| cov (0.132153) | |
| ova (0.129132) | |
| sug (0.127291) | |
| eep (0.122564) | |
| cbl (0.114797) | |
| jca (0.11396) | |
| spc (0.113366) | |
| cty (0.10408) | |
| jej (0.0989218) | |
| eje (0.0988338) |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| rec (0.865351) | |
| isp (0.451128) | |
| liv (0.292569) | |
| spl (0.286369) | |
| cje (0.165235) | |
| ctl (0.153069) | |
| cag (0.151194) | |
| fat (0.147427) | |
| ski (0.146735) | |
| cov (0.132153) | |
| ova (0.129132) | |
| sug (0.127291) | |
| eep (0.122564) | |
| cbl (0.114797) | |
| jca (0.11396) | |
| spc (0.113366) | |
| cty (0.10408) | |
| jej (0.0989218) | |
| eje (0.0988338) |