Non-Coding RNA Search

Ss1.1-Pig4-TMW8023D19.3

Sequence:


               
               CATATCCAGCTAGTGAGGAACGGAGCCAAGCTGAGCAGCCTTCCTCAGATCCCTACTCCC
ACTTTGCCTCCACCCCCGTCAGAGACAGACTTCATGCTTCAGGTGTTTCAACCCAATCCC
TCTCTGGCTCCTCGGATGCCCTTCTCCATTGGGCAGGTCACAATGCCCATGGTTATGCCC
AGTGCAGATCCCTGTTCCTTGTCTTTCCCAATCCTGAACCCTGCCCTTTCCCAGCCCAAC
CAGCCTTCCCCACCCCTTCCTGGCTCCCATGGGAGAAACAGCCCTGGCTTGGGTTCCCTT
GTCGGGCCCCATGGTCCACATGTGCCCCCCGCCGCCTCCATCCCACCTCCCCCAGGCCTG
GGTGGTGTTAAGGCTTCTACTGAAACTCCCCGGCCCCAACCAGTAGACAAACTGGAGAAG
ATTCTGGAGAAGCTGCTGACCCGGTTCCCACAATGCAATAAGGCCCAGATGACCAACATC
CTTCAGCAAATCAAGACAGCACGTACCACCATGGCAGGTCTAACCATGGAGGAACTGATC
CAGTTGGTAGCTGCACGGCTGGCAGAGCATGAGCGGGTGGCAGCAAGTACTCAGCCACTT
GGTCGGATCCGGGCCTTGTTCCCTGCTCCATTGGCCCAAATCAGTACCCCAATGTTCTTG
CCTTCTGCCCAAGTTTCATATCCTGGGAGGTCTTCACATGCTCCAGCCACCTGTAAGCTG
TGTCTCATGTGCCAGAAACTTGTCCAGCCCAGTGAGCTGCATCCAATGGCATGTACCCAC
GTGCTGCACAAGGAGTGTATCAAATTCTGGGCCCAGACCAACACAAATGACACTTGTCCC
TTTTGTCCAACTCTTAAATGACGGACCTGACTGGGGAGAAAGAAGAGGAGAAACTGATGT
GAACAGGAAGCGCGGGTTCAAGATTTCTAAAACTCTATATTTATACAGTGACATATACTC
ATGCCATGTACATTTTTATTATATAGGTAATGTGTGTATAGAAAGTCTGTATTCCAATGT
TCGTAAATGAAAGTATGTATATTATGCAGAAATGGTCTGTCCCCCTCACCTTGCAATTCC
TCTGGGGGGAGCAGATTGTAGGTAAGATGCTGTTTAGTTTGGCCTTGAAATTACGATATT
CTTGCCTAGGGCTGTTTTCAAATACAATATAAAACCATCTAGGAAGCTGCTATTGCTCTA
AGGCCATCCTGCTTTGATTTGGCTCAGCCTCTAGTCCATTTTCTTAAGGCTCATGTACGC
AGATTTGAACCCTGGTGCTCACGTGCTGTCTGACCAGATGCCTTGCTTACTGAAAGCCTC
CAGAAGCCTCAGTGTTGTTCTAGCCCCTCTGCTCCAAATGGATAAAATGAGACTGATTGA
GGAAAAAAAAAATCTAACCCTGATAGTTTGGCTTTTCATTGAATATTTTACTGTGTTAAC
ACTCATTATTTGTACATAGACATTAGGTTTACAGAATATTCTGTTTGACATCAGCAAAAT
TCACAGTCCAAGAATAACAACACAACCGGGTCCCATTTCCCCCCATGCCGCCCACAAACT
TCTGGCCACCCTACTTCCTGGGTAGTCATCTCTTTAGAAACTAGCACAACCCACAGGTCT
TTCCTGGGCCAAGCCATCCCTTTCCATCACCGACTTGGCTTCGGCTCAAGCTCTGACAGA
CCAACCTTGTGAAGTCCTCACCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATATCCAGCTAGTGAGGAACGGAGCCAAGCTGAGCAGCCTTCCTCAGATCCCTACTCCC
ACTTTGCCTCCACCCCCGTCAGAGACAGACTTCATGCTTCAGGTGTTTCAACCCAATCCC
TCTCTGGCTCCTCGGATGCCCTTCTCCATTGGGCAGGTCACAATGCCCATGGTTATGCCC
AGTGCAGATCCCTGTTCCTTGTCTTTCCCAATCCTGAACCCTGCCCTTTCCCAGCCCAAC
CAGCCTTCCCCACCCCTTCCTGGCTCCCATGGGAGAAACAGCCCTGGCTTGGGTTCCCTT
GTCGGGCCCCATGGTCCACATGTGCCCCCCGCCGCCTCCATCCCACCTCCCCCAGGCCTG
GGTGGTGTTAAGGCTTCTACTGAAACTCCCCGGCCCCAACCAGTAGACAAACTGGAGAAG
ATTCTGGAGAAGCTGCTGACCCGGTTCCCACAATGCAATAAGGCCCAGATGACCAACATC
CTTCAGCAAATCAAGACAGCACGTACCACCATGGCAGGTCTAACCATGGAGGAACTGATC
CAGTTGGTAGCTGCACGGCTGGCAGAGCATGAGCGGGTGGCAGCAAGTACTCAGCCACTT
GGTCGGATCCGGGCCTTGTTCCCTGCTCCATTGGCCCAAATCAGTACCCCAATGTTCTTG
CCTTCTGCCCAAGTTTCATATCCTGGGAGGTCTTCACATGCTCCAGCCACCTGTAAGCTG
TGTCTCATGTGCCAGAAACTTGTCCAGCCCAGTGAGCTGCATCCAATGGCATGTACCCAC
GTGCTGCACAAGGAGTGTATCAAATTCTGGGCCCAGACCAACACAAATGACACTTGTCCC
TTTTGTCCAACTCTTAAATGACGGACCTGACTGGGGAGAAAGAAGAGGAGAAACTGATGT
GAACAGGAAGCGCGGGTTCAAGATTTCTAAAACTCTATATTTATACAGTGACATATACTC
ATGCCATGTACATTTTTATTATATAGGTAATGTGTGTATAGAAAGTCTGTATTCCAATGT
TCGTAAATGAAAGTATGTATATTATGCAGAAATGGTCTGTCCCCCTCACCTTGCAATTCC
TCTGGGGGGAGCAGATTGTAGGTAAGATGCTGTTTAGTTTGGCCTTGAAATTACGATATT
CTTGCCTAGGGCTGTTTTCAAATACAATATAAAACCATCTAGGAAGCTGCTATTGCTCTA
AGGCCATCCTGCTTTGATTTGGCTCAGCCTCTAGTCCATTTTCTTAAGGCTCATGTACGC
AGATTTGAACCCTGGTGCTCACGTGCTGTCTGACCAGATGCCTTGCTTACTGAAAGCCTC
CAGAAGCCTCAGTGTTGTTCTAGCCCCTCTGCTCCAAATGGATAAAATGAGACTGATTGA
GGAAAAAAAAAATCTAACCCTGATAGTTTGGCTTTTCATTGAATATTTTACTGTGTTAAC
ACTCATTATTTGTACATAGACATTAGGTTTACAGAATATTCTGTTTGACATCAGCAAAAT
TCACAGTCCAAGAATAACAACACAACCGGGTCCCATTTCCCCCCATGCCGCCCACAAACT
TCTGGCCACCCTACTTCCTGGGTAGTCATCTCTTTAGAAACTAGCACAACCCACAGGTCT
TTCCTGGGCCAAGCCATCCCTTTCCATCACCGACTTGGCTTCGGCTCAAGCTCTGACAGA
CCAACCTTGTGAAGTCCTCACCTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8ND24_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8ND24_HUMAN

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               193-312, - strand, RNAz p=0.822064
               

               
               1031-1148, - strand, RNAz p=0.778921
               

               
               1188-1307, - strand, RNAz p=0.567944

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               193-312, - strand, RNAz p=0.822064
               

               
               1031-1148, - strand, RNAz p=0.778921
               

               
               1188-1307, - strand, RNAz p=0.567944

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               75-462, gnl|bosTau2|chr15 (13557444-13557832)
               

               
               75-462, gnl|Hg17|chr11 (116657809-116658197)
               

               
               75-462, gnl|Mm7|chr9 (45826249-45825861)
               


               
               592-700, gnl|bosTau2|chr15 (13558443-13558551)
               

               
               592-700, gnl|canFam2|chr5 (19326802-19326464)
               

               
               592-700, gnl|dasNov1|scaffold_4916 (51018-51308)
               

               
               592-700, gnl|echTel1|scaffold_300516 (2910-3204)
               

               
               592-700, gnl|galGal2|chr24 (4928130-4928456)
               

               
               592-700, gnl|hg17|chr11 (116658670-116658954)
               

               
               592-700, gnl|Hg17|chr11 (116658669-116658777)
               

               
               592-700, gnl|loxAfr1|scaffold_7234 (59057-58784)
               

               
               592-700, gnl|mm7|chr9 (45825178-45824884)
               

               
               592-700, gnl|Mm7|chr9 (45825177-45825069)
               

               
               592-700, gnl|monDom2|scaffold_2 (122007074-122006773)
               

               
               592-700, gnl|oryCun1|scaffold_174906 (3073-3364)
               

               
               592-700, gnl|panTro1|chr9 (118660805-118661089)
               

               
               592-700, gnl|rheMac2|chr14 (115683838-115684122)
               

               
               592-700, gnl|rn3|chr8 (48854786-48854497)
               


               
               794-1703, gnl|bosTau2|chr15 (13559799-13560705)
               

               
               794-1703, gnl|Hg17|chr11 (116661010-116661905)
               

               
               794-1703, gnl|Mm7|chr9 (45823123-45822257)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               75-462, gnl|bosTau2|chr15 (13557444-13557832)
               

               
               75-462, gnl|Hg17|chr11 (116657809-116658197)
               

               
               75-462, gnl|Mm7|chr9 (45826249-45825861)
               


               
               592-700, gnl|bosTau2|chr15 (13558443-13558551)
               

               
               592-700, gnl|canFam2|chr5 (19326802-19326464)
               

               
               592-700, gnl|dasNov1|scaffold_4916 (51018-51308)
               

               
               592-700, gnl|echTel1|scaffold_300516 (2910-3204)
               

               
               592-700, gnl|galGal2|chr24 (4928130-4928456)
               

               
               592-700, gnl|hg17|chr11 (116658670-116658954)
               

               
               592-700, gnl|Hg17|chr11 (116658669-116658777)
               

               
               592-700, gnl|loxAfr1|scaffold_7234 (59057-58784)
               

               
               592-700, gnl|mm7|chr9 (45825178-45824884)
               

               
               592-700, gnl|Mm7|chr9 (45825177-45825069)
               

               
               592-700, gnl|monDom2|scaffold_2 (122007074-122006773)
               

               
               592-700, gnl|oryCun1|scaffold_174906 (3073-3364)
               

               
               592-700, gnl|panTro1|chr9 (118660805-118661089)
               

               
               592-700, gnl|rheMac2|chr14 (115683838-115684122)
               

               
               592-700, gnl|rn3|chr8 (48854786-48854497)
               


               
               794-1703, gnl|bosTau2|chr15 (13559799-13560705)
               

               
               794-1703, gnl|Hg17|chr11 (116661010-116661905)
               

               
               794-1703, gnl|Mm7|chr9 (45823123-45822257)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

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               pla (0.401016)
               

               
               fty (0.351679)
               

               
               nep (0.183925)
               

               
               cag (0.151194)
               

               
               bfe (0.149858)
               

               
               cov (0.132153)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.401016)
               

               
               fty (0.351679)
               

               
               nep (0.183925)
               

               
               cag (0.151194)
               

               
               bfe (0.149858)
               

               
               cov (0.132153)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

	193-312, - strand, RNAz p=0.822064
	1031-1148, - strand, RNAz p=0.778921
	1188-1307, - strand, RNAz p=0.567944

	75-462, gnl\|bosTau2\|chr15 (13557444-13557832)
	75-462, gnl\|Hg17\|chr11 (116657809-116658197)
	75-462, gnl\|Mm7\|chr9 (45826249-45825861)

	592-700, gnl\|bosTau2\|chr15 (13558443-13558551)
	592-700, gnl\|canFam2\|chr5 (19326802-19326464)
	592-700, gnl\|dasNov1\|scaffold_4916 (51018-51308)
	592-700, gnl\|echTel1\|scaffold_300516 (2910-3204)
	592-700, gnl\|galGal2\|chr24 (4928130-4928456)
	592-700, gnl\|hg17\|chr11 (116658670-116658954)
	592-700, gnl\|Hg17\|chr11 (116658669-116658777)
	592-700, gnl\|loxAfr1\|scaffold_7234 (59057-58784)
	592-700, gnl\|mm7\|chr9 (45825178-45824884)
	592-700, gnl\|Mm7\|chr9 (45825177-45825069)
	592-700, gnl\|monDom2\|scaffold_2 (122007074-122006773)
	592-700, gnl\|oryCun1\|scaffold_174906 (3073-3364)
	592-700, gnl\|panTro1\|chr9 (118660805-118661089)
	592-700, gnl\|rheMac2\|chr14 (115683838-115684122)
	592-700, gnl\|rn3\|chr8 (48854786-48854497)

	794-1703, gnl\|bosTau2\|chr15 (13559799-13560705)
	794-1703, gnl\|Hg17\|chr11 (116661010-116661905)
	794-1703, gnl\|Mm7\|chr9 (45823123-45822257)

	pla (0.401016)
	fty (0.351679)
	nep (0.183925)
	cag (0.151194)
	bfe (0.149858)
	cov (0.132153)
	pgl (0.118483)
	ecc (0.115035)
	jca (0.11396)
	jej (0.0989218)