Ss1.1-Pig4-TMW8023D22.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTTGTGGGCAGGATCCAGAGCTGGTGCGGAACATCTGTCGCTGGGTTAGGCAAGCTGTTC AGATTCCCTTTTTTGCCAAGTTGACCCCAAACGTCACTGATATAGTAAGCATCGCCAGAG CGGCCAAGGAAGGTGGTGCAGATGGTGTTACAGCCACCAACACGGTCTCAGGTCTCATGG GATTAAAAGCCGATGGCACGCCCTGGCCAGCGGTGGGTGCTGGGAAGCGGACTACATACG GAGGAGTGTCTGGCACGGCCATCAGACCAATTGCTTTGAGAGCTGTGACCACCATTGCTC GTGCTTTGCCTGGATTTCCCATTTTGGCTACTGGTGGAATTGACTCAGCTGAAAGTGGAC TTCAGTTTCTCCACAGTGGTGCTTCGGTCCTCCAGGTATGCAGTGCTGTTCAGAATCAGG ATTTCACTGTCATCCAAGACTATTGCACTGGCCTCAAAGCCTTGCTTTATCTGAAAAGCA TTGAAGAACTACAAGGCTGGGATGGGCAGAGTCCAGGTACCGAGAGTCACCAGAAGGGGA AACCAGTTCCTCGTATTGCTGAACTCATGGGAAAGAAACTGCCAAATTTTGGACCTTATC TGGAGCAACGCAAGAAAATCATAGCAGAGGAAAAGATGAGACTGAAAGAACAAAATGCAG CTTTTCCACCACTTGAGAGAAAACCTTTTATTCCCAAAAAGCCTATTCCTGCTATTAAGG ATGTAATTGGAAAAGCACTGCAGTACCTTGGAACGTTTGGTGAACTGAGCAACATAGAGC AAGTTGTGGCTGTGATCGATGAAGAAATGTGTATCAACTGTGGCAAATGCTACATGACCT GTAATGACTCTGGCTACCAGGCTATCCAGTTTGATCCCGAAACCCACCTGCCCACCGTTA CTGACACTTGCACAGGCTGTACCCTGTGTCTCTCCGTCTGCCCTATTATCGACTGCATCA GAATGGTTTCCAGGACAACACCTTACGAACCAAAGAGAGGCTTGCCCTTGGCTGTGAATC CGGTGTGCTGAGGTGATTCGTGGAACAGTTGCTGTGAACTTTGAGGTCACCCCCATATGC TGTCTTTTTAATTGTGGTTATTATACTCAGCTCTTTCTCAATGAAAACAAATATAATATT TCTAGATAAAAGTTCTAAATACATGTCTAAATTTTAAAAAACATCTACTGCCAGAGCCCG TTCAATTAATGGTCATAAAATAGAATCCTGCTTTTCTGAGGCTAGTTGTTCAATAACTGC TGCAGTTAATTGGATGTTCTCCATCAGTTATCCATTATGAAAAATATTAACTTTTTTGGT GGCAATTTCCAAATTGCCCTATGCTGTGCTCTGTCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTTGTGGGCAGGATCCAGAGCTGGTGCGGAACATCTGTCGCTGGGTTAGGCAAGCTGTTC AGATTCCCTTTTTTGCCAAGTTGACCCCAAACGTCACTGATATAGTAAGCATCGCCAGAG CGGCCAAGGAAGGTGGTGCAGATGGTGTTACAGCCACCAACACGGTCTCAGGTCTCATGG GATTAAAAGCCGATGGCACGCCCTGGCCAGCGGTGGGTGCTGGGAAGCGGACTACATACG GAGGAGTGTCTGGCACGGCCATCAGACCAATTGCTTTGAGAGCTGTGACCACCATTGCTC GTGCTTTGCCTGGATTTCCCATTTTGGCTACTGGTGGAATTGACTCAGCTGAAAGTGGAC TTCAGTTTCTCCACAGTGGTGCTTCGGTCCTCCAGGTATGCAGTGCTGTTCAGAATCAGG ATTTCACTGTCATCCAAGACTATTGCACTGGCCTCAAAGCCTTGCTTTATCTGAAAAGCA TTGAAGAACTACAAGGCTGGGATGGGCAGAGTCCAGGTACCGAGAGTCACCAGAAGGGGA AACCAGTTCCTCGTATTGCTGAACTCATGGGAAAGAAACTGCCAAATTTTGGACCTTATC TGGAGCAACGCAAGAAAATCATAGCAGAGGAAAAGATGAGACTGAAAGAACAAAATGCAG CTTTTCCACCACTTGAGAGAAAACCTTTTATTCCCAAAAAGCCTATTCCTGCTATTAAGG ATGTAATTGGAAAAGCACTGCAGTACCTTGGAACGTTTGGTGAACTGAGCAACATAGAGC AAGTTGTGGCTGTGATCGATGAAGAAATGTGTATCAACTGTGGCAAATGCTACATGACCT GTAATGACTCTGGCTACCAGGCTATCCAGTTTGATCCCGAAACCCACCTGCCCACCGTTA CTGACACTTGCACAGGCTGTACCCTGTGTCTCTCCGTCTGCCCTATTATCGACTGCATCA GAATGGTTTCCAGGACAACACCTTACGAACCAAAGAGAGGCTTGCCCTTGGCTGTGAATC CGGTGTGCTGAGGTGATTCGTGGAACAGTTGCTGTGAACTTTGAGGTCACCCCCATATGC TGTCTTTTTAATTGTGGTTATTATACTCAGCTCTTTCTCAATGAAAACAAATATAATATT TCTAGATAAAAGTTCTAAATACATGTCTAAATTTTAAAAAACATCTACTGCCAGAGCCCG TTCAATTAATGGTCATAAAATAGAATCCTGCTTTTCTGAGGCTAGTTGTTCAATAACTGC TGCAGTTAATTGGATGTTCTCCATCAGTTATCCATTATGAAAAATATTAACTTTTTTGGT GGCAATTTCCAAATTGCCCTATGCTGTGCTCTGTCT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 9-134, gnl|bosTau2|chr3 (37128628-37128753) | |
| 9-134, gnl|canFam2|chr6 (55407505-55407356) | |
| 9-134, gnl|danRer3|chr24 (28398957-28399105) | |
| 9-134, gnl|dasNov1|scaffold_15757 (39188-39039) | |
| 9-134, gnl|echTel1|scaffold_199580 (1585-1436) | |
| 9-134, gnl|fr1|chrUn (288960787-288960639) | |
| 9-134, gnl|galGal2|chr8 (13154141-13153992) | |
| 9-134, gnl|hg17|chr1 (97483751-97483900) | |
| 9-134, gnl|Hg17|chr1 (97483877-97483752) | |
| 9-134, gnl|mm7|chr3 (118966794-118966645) | |
| 9-134, gnl|Mm7|chr3 (118966666-118966791) | |
| 9-134, gnl|monDom2|scaffold_0 (22716191-22716042) | |
| 9-134, gnl|oryCun1|scaffold_180237 (3161-3012) | |
| 9-134, gnl|panTro1|chr1 (96499752-96499901) | |
| 9-134, gnl|rheMac2|chr1 (100362036-100362185) | |
| 9-134, gnl|rn3|chr2 (215532035-215531886) | |
| 9-134, gnl|tetNig1|chrUn_random (117867245-117867113) | |
| 9-134, gnl|xenTro1|scaffold_36 (798853-799002) | |
| 391-575, gnl|bosTau2|chr3 (37233169-37233353) | |
| 391-575, gnl|canFam2|chr6 (55507350-55507214) | |
| 391-575, gnl|danRer3|chr24 (28324930-28325066) | |
| 391-575, gnl|dasNov1|scaffold_130812 (3680-3816) | |
| 391-575, gnl|echTel1|scaffold_318984 (96095-96231) | |
| 391-575, gnl|galGal2|chr8 (13197723-13197587) | |
| 391-575, gnl|hg17|chr1 (97370640-97370776) | |
| 391-575, gnl|Hg17|chr1 (97370830-97370646) | |
| 391-575, gnl|loxAfr1|scaffold_1857 (71633-71769) | |
| 391-575, gnl|mm7|chr3 (119087366-119087230) | |
| 391-575, gnl|Mm7|chr3 (119087174-119087358) | |
| 391-575, gnl|monDom2|scaffold_0 (22846625-22846449) | |
| 391-575, gnl|oryCun1|scaffold_208730 (123046-123182) | |
| 391-575, gnl|panTro1|chr1 (96385622-96385758) | |
| 391-575, gnl|rheMac2|chr1 (100248041-100248177) | |
| 391-575, gnl|rn3|chr2 (215662311-215662175) | |
| 391-575, gnl|tetNig1|chrUn_random (117868585-117868459) | |
| 391-575, gnl|xenTro1|scaffold_36 (748907-749043) | |
| 858-1327, gnl|bosTau2|chr3 (39119989-39120466) | |
| 858-1327, gnl|Hg17|chr1 (97256726-97256249) | |
| 858-1327, gnl|Mm7|chr3 (119203911-119204430) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 9-134, gnl|bosTau2|chr3 (37128628-37128753) | |
| 9-134, gnl|canFam2|chr6 (55407505-55407356) | |
| 9-134, gnl|danRer3|chr24 (28398957-28399105) | |
| 9-134, gnl|dasNov1|scaffold_15757 (39188-39039) | |
| 9-134, gnl|echTel1|scaffold_199580 (1585-1436) | |
| 9-134, gnl|fr1|chrUn (288960787-288960639) | |
| 9-134, gnl|galGal2|chr8 (13154141-13153992) | |
| 9-134, gnl|hg17|chr1 (97483751-97483900) | |
| 9-134, gnl|Hg17|chr1 (97483877-97483752) | |
| 9-134, gnl|mm7|chr3 (118966794-118966645) | |
| 9-134, gnl|Mm7|chr3 (118966666-118966791) | |
| 9-134, gnl|monDom2|scaffold_0 (22716191-22716042) | |
| 9-134, gnl|oryCun1|scaffold_180237 (3161-3012) | |
| 9-134, gnl|panTro1|chr1 (96499752-96499901) | |
| 9-134, gnl|rheMac2|chr1 (100362036-100362185) | |
| 9-134, gnl|rn3|chr2 (215532035-215531886) | |
| 9-134, gnl|tetNig1|chrUn_random (117867245-117867113) | |
| 9-134, gnl|xenTro1|scaffold_36 (798853-799002) | |
| 391-575, gnl|bosTau2|chr3 (37233169-37233353) | |
| 391-575, gnl|canFam2|chr6 (55507350-55507214) | |
| 391-575, gnl|danRer3|chr24 (28324930-28325066) | |
| 391-575, gnl|dasNov1|scaffold_130812 (3680-3816) | |
| 391-575, gnl|echTel1|scaffold_318984 (96095-96231) | |
| 391-575, gnl|galGal2|chr8 (13197723-13197587) | |
| 391-575, gnl|hg17|chr1 (97370640-97370776) | |
| 391-575, gnl|Hg17|chr1 (97370830-97370646) | |
| 391-575, gnl|loxAfr1|scaffold_1857 (71633-71769) | |
| 391-575, gnl|mm7|chr3 (119087366-119087230) | |
| 391-575, gnl|Mm7|chr3 (119087174-119087358) | |
| 391-575, gnl|monDom2|scaffold_0 (22846625-22846449) | |
| 391-575, gnl|oryCun1|scaffold_208730 (123046-123182) | |
| 391-575, gnl|panTro1|chr1 (96385622-96385758) | |
| 391-575, gnl|rheMac2|chr1 (100248041-100248177) | |
| 391-575, gnl|rn3|chr2 (215662311-215662175) | |
| 391-575, gnl|tetNig1|chrUn_random (117868585-117868459) | |
| 391-575, gnl|xenTro1|scaffold_36 (748907-749043) | |
| 858-1327, gnl|bosTau2|chr3 (39119989-39120466) | |
| 858-1327, gnl|Hg17|chr1 (97256726-97256249) | |
| 858-1327, gnl|Mm7|chr3 (119203911-119204430) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| kid (0.259471) | |
| mas (0.210305) | |
| ill (0.175593) | |
| ton (0.1755) | |
| lun (0.150489) | |
| ski (0.146735) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| kid (0.259471) | |
| mas (0.210305) | |
| ill (0.175593) | |
| ton (0.1755) | |
| lun (0.150489) | |
| ski (0.146735) |