Non-Coding RNA Search

Ss1.1-Pig4-TMW8023E12.3

Sequence:


               
               GCGGGGCACTGCGAACCCGGAGCTCGGTGACACCCGGCGGTCGCGGCTGGCTGTCTGACT
CTGAGGATGGCGGGGAGGGGGAAGCTAATTGCGGTGATCGGAGACGAAGACACGGTGACT
GGCTTCCTGCTGGGCGGCATAGGGGAGCTTAACAAAAACCGCCACCCTAATTTCCTGGTG
GTGGAGAAGGATACAACCATCAATGAGATCGAAGACACTTTCCGGCAGTTCCTCAACCGG
GAGGACATCGGCATCATCCTCATCAACCAGTACATCGCAGAGATGGTGCGGCACGCGCTC
GACGCCCACCAGCGCTCCATCCCAGCCGTCCTGGAGATCCCGTCCAAGGAGCACCCCTAT
GATGCTGCCAAGGACTCCATCCTGCGCAGGGCCAAGGGCATGTTCACGGCTGAAGACCTA
CGCTAGGGGGACTCCCCGCAGCCCTGCAGCCTCTCCCCAGGCTTGCGACCAGCCCTTCTC
TGAGATTTGAGCCTCCGAGTTCCAATTCCCCTGCCCCTTCCCACTCCACTGAGAGGCTAG
GTGAGGTGTTTCCAGGTTGCTGGGGCTCTGCCATTAAATCAAGGCCGGTTAGGGAACAGG
AAGCCTGAGTCTTCACTCCACTACCTCTTCCCTGTGCTGTTACAGTGTCATTGTCGATGT
TAAATTAAAATAATGTTCTTGGAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGGGCACTGCGAACCCGGAGCTCGGTGACACCCGGCGGTCGCGGCTGGCTGTCTGACT
CTGAGGATGGCGGGGAGGGGGAAGCTAATTGCGGTGATCGGAGACGAAGACACGGTGACT
GGCTTCCTGCTGGGCGGCATAGGGGAGCTTAACAAAAACCGCCACCCTAATTTCCTGGTG
GTGGAGAAGGATACAACCATCAATGAGATCGAAGACACTTTCCGGCAGTTCCTCAACCGG
GAGGACATCGGCATCATCCTCATCAACCAGTACATCGCAGAGATGGTGCGGCACGCGCTC
GACGCCCACCAGCGCTCCATCCCAGCCGTCCTGGAGATCCCGTCCAAGGAGCACCCCTAT
GATGCTGCCAAGGACTCCATCCTGCGCAGGGCCAAGGGCATGTTCACGGCTGAAGACCTA
CGCTAGGGGGACTCCCCGCAGCCCTGCAGCCTCTCCCCAGGCTTGCGACCAGCCCTTCTC
TGAGATTTGAGCCTCCGAGTTCCAATTCCCCTGCCCCTTCCCACTCCACTGAGAGGCTAG
GTGAGGTGTTTCCAGGTTGCTGGGGCTCTGCCATTAAATCAAGGCCGGTTAGGGAACAGG
AAGCCTGAGTCTTCACTCCACTACCTCTTCCCTGTGCTGTTACAGTGTCATTGTCGATGT
TAAATTAAAATAATGTTCTTGGAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|16758754|ref|NP_446336.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|16758754|ref|NP_446336.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               26-181, + strand, RNAz p=0.895461

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               26-181, + strand, RNAz p=0.895461

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               26-400, gnl|bosTau2|chr21 (44576196-44575819)
               

               
               26-400, gnl|Hg17|chr12 (46765068-46765445)
               

               
               26-400, gnl|Mm7|chr17 (72618548-72618216)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               26-400, gnl|bosTau2|chr21 (44576196-44575819)
               

               
               26-400, gnl|Hg17|chr12 (46765068-46765445)
               

               
               26-400, gnl|Mm7|chr17 (72618548-72618216)

Expressed library(ies): 27 entry(ies)

More info

Expressed library(ies): 27 entry(ies)

Help | Less info


               
               nep (0.551775)
               

               
               pro (0.512033)
               

               
               ecc (0.46014)
               

               
               amn (0.417711)
               

               
               ute (0.398353)
               

               
               elu (0.385356)
               

               
               nlu (0.383362)
               

               
               fty (0.351679)
               

               
               duo (0.345602)
               

               
               fhi (0.339155)
               

               
               eje (0.296501)
               

               
               hyp (0.285673)
               

               
               pty (0.285429)
               

               
               cga (0.279096)
               

               
               hlv (0.278513)
               

               
               ebs (0.236602)
               

               
               nms (0.213858)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               csp (0.161186)
               

               
               eli (0.151814)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               jej (0.0989218)

Expressed library(ies): 27 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.551775)
               

               
               pro (0.512033)
               

               
               ecc (0.46014)
               

               
               amn (0.417711)
               

               
               ute (0.398353)
               

               
               elu (0.385356)
               

               
               nlu (0.383362)
               

               
               fty (0.351679)
               

               
               duo (0.345602)
               

               
               fhi (0.339155)
               

               
               eje (0.296501)
               

               
               hyp (0.285673)
               

               
               pty (0.285429)
               

               
               cga (0.279096)
               

               
               hlv (0.278513)
               

               
               ebs (0.236602)
               

               
               nms (0.213858)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               csp (0.161186)
               

               
               eli (0.151814)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               jej (0.0989218)

	26-400, gnl\|bosTau2\|chr21 (44576196-44575819)
	26-400, gnl\|Hg17\|chr12 (46765068-46765445)
	26-400, gnl\|Mm7\|chr17 (72618548-72618216)

	nep (0.551775)
	pro (0.512033)
	ecc (0.46014)
	amn (0.417711)
	ute (0.398353)
	elu (0.385356)
	nlu (0.383362)
	fty (0.351679)
	duo (0.345602)
	fhi (0.339155)
	eje (0.296501)
	hyp (0.285673)
	pty (0.285429)
	cga (0.279096)
	hlv (0.278513)
	ebs (0.236602)
	nms (0.213858)
	fbs (0.175346)
	mcp (0.170648)
	csp (0.161186)
	eli (0.151814)
	lnt (0.142308)
	nca (0.136874)
	ese (0.126502)
	eep (0.122564)
	eru (0.120048)
	jej (0.0989218)