Ss1.1-Pig4-TMW8023E17.5
|
GGCCAAACCATGGCGGAGAAGACTCAAAAGAGTGTGAAGATTGCACCTGGAGCAGTTGTA
TGTGTAGAGAGTGAAATCAGGGGTGATGTAACTATAGGACCCAGGACAGTGATCCACCCT
AAAGCACGAATCATTGCAGAAGCCGGGCCAATAGTGATCGGCGAAGGTAACCTGATAGAA
GAACAGGCGCTTATCATAAATGCTCACCCTGATAATATCACTCCTGATGCAGAAGATTCA
GAACCAAAACCCATGATCATTGGCACTAATAATGTATTTGAAGTTGGCTGTTATTCCCAA
GCCATGAAAATGGGAGATAATAATGTTATTGAATCAAAAGCGTATGTAGGCAGAAACGTA
ATACTGACAAGTGGCTGCATCATTGGGGCTTGTTGCAACCTGAACACGTTTGAAGTCATT
CCTGAGAACACAGTGATCTATGGTGCAGACTGCCTGCGTCGGGTGCAGACTGAGCGGCCA
CAGCCCCAGACACTACAGTTGGATTTCCTGATGAAAATCTTGCCAAACTATCATCACCTA
AAGAAGACTATGAAAGGAAGTTCAACTCCAGTTAAGAACTAAGAACAGTGTTTGACATCA
AGATTGCATTTGACTTTGACCACTGTCTTTTCAAAGACATGGTGTTTATGCCCTCTTAAG
CAGTCCACAGAATAATACGTGTTGACTTTATTTTGTAAAATTGAGTTAGAGAGGAAAGCA
ATGGGTTTTCATTGTTCCTGCCCTCTATAATTTATATAAAATGTATTGTTTTCTTATATC
CTTGTCCCTTTTCTCATAATTTACGGATTTTTTGTTTTGTGTTGTTTGGTTATATAAAAT
GTTGGCCTTGAATTTTAGTTATATGAAAGACTACCTGTTATAAGAAAGAGAATATTGTGT
ATTTATATTCTAGCATTTACTAAGCTAATTAAAATAAATAAAAATGTTGACGACAGGACT
TTTAGTGAATATACTTTAATCAGTATTTCTCCTTGTATTAACTTTCCCAAAATAGCTCTT
CTAATTTTTATTGTGTACTAGCTATATATTAAAGCTAATGTGTTTACC
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GGCCAAACCATGGCGGAGAAGACTCAAAAGAGTGTGAAGATTGCACCTGGAGCAGTTGTA
TGTGTAGAGAGTGAAATCAGGGGTGATGTAACTATAGGACCCAGGACAGTGATCCACCCT
AAAGCACGAATCATTGCAGAAGCCGGGCCAATAGTGATCGGCGAAGGTAACCTGATAGAA
GAACAGGCGCTTATCATAAATGCTCACCCTGATAATATCACTCCTGATGCAGAAGATTCA
GAACCAAAACCCATGATCATTGGCACTAATAATGTATTTGAAGTTGGCTGTTATTCCCAA
GCCATGAAAATGGGAGATAATAATGTTATTGAATCAAAAGCGTATGTAGGCAGAAACGTA
ATACTGACAAGTGGCTGCATCATTGGGGCTTGTTGCAACCTGAACACGTTTGAAGTCATT
CCTGAGAACACAGTGATCTATGGTGCAGACTGCCTGCGTCGGGTGCAGACTGAGCGGCCA
CAGCCCCAGACACTACAGTTGGATTTCCTGATGAAAATCTTGCCAAACTATCATCACCTA
AAGAAGACTATGAAAGGAAGTTCAACTCCAGTTAAGAACTAAGAACAGTGTTTGACATCA
AGATTGCATTTGACTTTGACCACTGTCTTTTCAAAGACATGGTGTTTATGCCCTCTTAAG
CAGTCCACAGAATAATACGTGTTGACTTTATTTTGTAAAATTGAGTTAGAGAGGAAAGCA
ATGGGTTTTCATTGTTCCTGCCCTCTATAATTTATATAAAATGTATTGTTTTCTTATATC
CTTGTCCCTTTTCTCATAATTTACGGATTTTTTGTTTTGTGTTGTTTGGTTATATAAAAT
GTTGGCCTTGAATTTTAGTTATATGAAAGACTACCTGTTATAAGAAAGAGAATATTGTGT
ATTTATATTCTAGCATTTACTAAGCTAATTAAAATAAATAAAAATGTTGACGACAGGACT
TTTAGTGAATATACTTTAATCAGTATTTCTCCTTGTATTAACTTTCCCAAAATAGCTCTT
CTAATTTTTATTGTGTACTAGCTATATATTAAAGCTAATGTGTTTACC
|
|
gi|15341964|gb|AAH13175.1| |
Protein identifier
|
gi|15341964|gb|AAH13175.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
96-203, gnl|bosTau2|chr27 (18514180-18514287) |
|
96-203, gnl|canFam2|chr16 (37083652-37083544) |
|
96-203, gnl|danRer3|chrNA (91142495-91142603) |
|
96-203, gnl|dasNov1|scaffold_114834 (912-992) |
|
96-203, gnl|echTel1|scaffold_300107 (51073-50965) |
|
96-203, gnl|fr1|chrUn (272248449-272248557) |
|
96-203, gnl|hg17|chr8 (30152141-30152249) |
|
96-203, gnl|Hg17|chr8 (30152141-30152248) |
|
96-203, gnl|mm7|chr8 (32860800-32860692) |
|
96-203, gnl|Mm7|chr8 (32860798-32860691) |
|
96-203, gnl|oryCun1|scaffold_206216 (36523-36415) |
|
96-203, gnl|panTro1|chr7 (31218239-31218347) |
|
96-203, gnl|rheMac2|chr8 (30410406-30410514) |
|
96-203, gnl|rn3|chr16 (61817082-61817190) |
|
96-203, gnl|tetNig1|chrUn_random (111797858-111797751) |
|
96-203, gnl|xenTro1|scaffold_1457 (47539-47645) |
| |
|
316-616, gnl|bosTau2|chr16 (17286104-17285814) |
|
316-616, gnl|Hg17|chr8 (30157544-30160279) |
| |
|
931-1068, gnl|bosTau2|chr16 (17285722-17285585) |
|
931-1068, gnl|Hg17|chr8 (30160569-30160694) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
96-203, gnl|bosTau2|chr27 (18514180-18514287) |
|
96-203, gnl|canFam2|chr16 (37083652-37083544) |
|
96-203, gnl|danRer3|chrNA (91142495-91142603) |
|
96-203, gnl|dasNov1|scaffold_114834 (912-992) |
|
96-203, gnl|echTel1|scaffold_300107 (51073-50965) |
|
96-203, gnl|fr1|chrUn (272248449-272248557) |
|
96-203, gnl|hg17|chr8 (30152141-30152249) |
|
96-203, gnl|Hg17|chr8 (30152141-30152248) |
|
96-203, gnl|mm7|chr8 (32860800-32860692) |
|
96-203, gnl|Mm7|chr8 (32860798-32860691) |
|
96-203, gnl|oryCun1|scaffold_206216 (36523-36415) |
|
96-203, gnl|panTro1|chr7 (31218239-31218347) |
|
96-203, gnl|rheMac2|chr8 (30410406-30410514) |
|
96-203, gnl|rn3|chr16 (61817082-61817190) |
|
96-203, gnl|tetNig1|chrUn_random (111797858-111797751) |
|
96-203, gnl|xenTro1|scaffold_1457 (47539-47645) |
| |
|
316-616, gnl|bosTau2|chr16 (17286104-17285814) |
|
316-616, gnl|Hg17|chr8 (30157544-30160279) |
| |
|
931-1068, gnl|bosTau2|chr16 (17285722-17285585) |
|
931-1068, gnl|Hg17|chr8 (30160569-30160694) |
|
cbe (0.956938) |
|
sug (0.636456) |
|
aor (0.585823) |
|
csk (0.562984) |
|
fhi (0.508733) |
|
ldo (0.485013) |
|
fco (0.471624) |
|
bfe (0.449573) |
|
ski (0.440205) |
|
lyg (0.399308) |
|
ret (0.3862) |
|
thg (0.380373) |
|
sto (0.359648) |
|
pgl (0.35545) |
|
gul (0.355177) |
|
spc (0.340097) |
|
vin (0.332557) |
|
tbr (0.308356) |
|
sme (0.305437) |
|
liv (0.292569) |
|
che (0.272628) |
|
ssp (0.271039) |
|
kid (0.259471) |
|
ova (0.258264) |
|
mgp (0.230681) |
|
mas (0.210305) |
|
cmu (0.186393) |
|
nep (0.183925) |
|
mgm (0.180343) |
|
sin (0.174948) |
|
cut (0.169924) |
|
cje (0.165235) |
|
nco (0.161734) |
|
mga (0.160205) |
|
fat (0.147427) |
|
spl (0.143184) |
|
pty (0.142714) |
|
hlv (0.139256) |
|
ste (0.135208) |
|
nmm (0.132802) |
|
eru (0.120048) |
|
ecc (0.115035) |
|
cty (0.10408) |
|
cbe (0.956938) |
|
sug (0.636456) |
|
aor (0.585823) |
|
csk (0.562984) |
|
fhi (0.508733) |
|
ldo (0.485013) |
|
fco (0.471624) |
|
bfe (0.449573) |
|
ski (0.440205) |
|
lyg (0.399308) |
|
ret (0.3862) |
|
thg (0.380373) |
|
sto (0.359648) |
|
pgl (0.35545) |
|
gul (0.355177) |
|
spc (0.340097) |
|
vin (0.332557) |
|
tbr (0.308356) |
|
sme (0.305437) |
|
liv (0.292569) |
|
che (0.272628) |
|
ssp (0.271039) |
|
kid (0.259471) |
|
ova (0.258264) |
|
mgp (0.230681) |
|
mas (0.210305) |
|
cmu (0.186393) |
|
nep (0.183925) |
|
mgm (0.180343) |
|
sin (0.174948) |
|
cut (0.169924) |
|
cje (0.165235) |
|
nco (0.161734) |
|
mga (0.160205) |
|
fat (0.147427) |
|
spl (0.143184) |
|
pty (0.142714) |
|
hlv (0.139256) |
|
ste (0.135208) |
|
nmm (0.132802) |
|
eru (0.120048) |
|
ecc (0.115035) |
|
cty (0.10408) |
