Non-Coding RNA Search

Ss1.1-Pig4-TMW8023F05.3

Sequence:


               
               TAGTAGCTAACAGCACTTTACTTTGAAAAGGCTTTTTTCTGTTTTATTACAAATCTATCA
GTTGTTTGACTATGGTATGAAATATTTTAATATCATGCTGTAAAAAACTGGTTCATAGCT
GCTCAGAGTGCTGACTGGGAGACCAAAATCATGGTAAATGTTGATTTCCTAGGGACATTA
GCTCTGAGTCCTCTGCTATCAAGAGCAGTTCATGCTCCTTGCCTTTAGAACTTTTTTTCC
CAGCCTTGCCTGTGGCATGCAGAAGTTCCCAGGCCAGGGATCAAAACAGCACCACAACTG
TGAAAATGCCAGATCCTTAACCTGCTAGGCCACCAGGGAACTCCAGAACTTCCCTTTTTA
AACATTAAAATCTTAAAAGGCCTGGTATAAATGACCAGGCTATAGCCACATATAAATAAA
TTTCAAGGAAGAAAATAGAAAAAGAAAATTAAAGTAGTAGAGATGTATTTTTGGATGCAC
AGGCAGTAAGAGGAATAAGGATACACTGCCTAGCTGCTGCTGTTTCTATTTCTTTATCTT
ATGGGAAGGGTGGCTGCCATTTCCTAAAGAGGAAGGAATTCAGATAAGAACTTTTCTTTA
GTCCCAGCCACTGGTTTTAACAAATGTGAATTATGGAAATATGATGGGACAAAAAGAATT
AATCATACATTTGAACTGTCTTGTTCAGCACCAGTATTGTGTACGTTACAAATCATAATT
TCTAAATCTGGGCTTATTTTATTGTATTTTTAACTGTTTCTAAACTAAGGAACTGTATAG
AAAAACTGTCTCTTTTTTAAAAATATCGTATTTTTAAATAAAGCATTTTTTGTAGAAAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAGTAGCTAACAGCACTTTACTTTGAAAAGGCTTTTTTCTGTTTTATTACAAATCTATCA
GTTGTTTGACTATGGTATGAAATATTTTAATATCATGCTGTAAAAAACTGGTTCATAGCT
GCTCAGAGTGCTGACTGGGAGACCAAAATCATGGTAAATGTTGATTTCCTAGGGACATTA
GCTCTGAGTCCTCTGCTATCAAGAGCAGTTCATGCTCCTTGCCTTTAGAACTTTTTTTCC
CAGCCTTGCCTGTGGCATGCAGAAGTTCCCAGGCCAGGGATCAAAACAGCACCACAACTG
TGAAAATGCCAGATCCTTAACCTGCTAGGCCACCAGGGAACTCCAGAACTTCCCTTTTTA
AACATTAAAATCTTAAAAGGCCTGGTATAAATGACCAGGCTATAGCCACATATAAATAAA
TTTCAAGGAAGAAAATAGAAAAAGAAAATTAAAGTAGTAGAGATGTATTTTTGGATGCAC
AGGCAGTAAGAGGAATAAGGATACACTGCCTAGCTGCTGCTGTTTCTATTTCTTTATCTT
ATGGGAAGGGTGGCTGCCATTTCCTAAAGAGGAAGGAATTCAGATAAGAACTTTTCTTTA
GTCCCAGCCACTGGTTTTAACAAATGTGAATTATGGAAATATGATGGGACAAAAAGAATT
AATCATACATTTGAACTGTCTTGTTCAGCACCAGTATTGTGTACGTTACAAATCATAATT
TCTAAATCTGGGCTTATTTTATTGTATTTTTAACTGTTTCTAAACTAAGGAACTGTATAG
AAAAACTGTCTCTTTTTTAAAAATATCGTATTTTTAAATAAAGCATTTTTTGTAGAAAGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               543-661, + strand, RNAz p=0.855747

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               543-661, + strand, RNAz p=0.855747

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_015891, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_015891, +

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               1-233, gnl|bosTau2|chr4 (54114708-54114946)
               

               
               1-233, gnl|Hg17|chr6 (110659321-110659664)
               


               
               346-840, gnl|bosTau2|chr4 (54114941-54115418)
               

               
               346-840, gnl|Hg17|chr6 (110659659-110660118)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-233, gnl|bosTau2|chr4 (54114708-54114946)
               

               
               1-233, gnl|Hg17|chr6 (110659321-110659664)
               


               
               346-840, gnl|bosTau2|chr4 (54114941-54115418)
               

               
               346-840, gnl|Hg17|chr6 (110659659-110660118)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               aor (0.585823)
               

               
               vin (0.332557)
               

               
               kid (0.259471)
               

               
               cmu (0.186393)
               

               
               mgm (0.180343)
               

               
               tbr (0.154178)
               

               
               che (0.136314)
               

               
               thg (0.126791)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.585823)
               

               
               vin (0.332557)
               

               
               kid (0.259471)
               

               
               cmu (0.186393)
               

               
               mgm (0.180343)
               

               
               tbr (0.154178)
               

               
               che (0.136314)
               

               
               thg (0.126791)

	1-233, gnl\|bosTau2\|chr4 (54114708-54114946)
	1-233, gnl\|Hg17\|chr6 (110659321-110659664)

	346-840, gnl\|bosTau2\|chr4 (54114941-54115418)
	346-840, gnl\|Hg17\|chr6 (110659659-110660118)

	aor (0.585823)
	vin (0.332557)
	kid (0.259471)
	cmu (0.186393)
	mgm (0.180343)
	tbr (0.154178)
	che (0.136314)
	thg (0.126791)