Non-Coding RNA Search

Ss1.1-Pig4-TMW8023F11.5

Sequence:


               
               GAAAGGCAGGAAGTCCCTGAGGTGTTCTTTTCTTTTTCGTCTGAGTGTATAGTGTTAAGA
TGCCTAGAAAAGGGACTCTGCTGTCCCTTCTTAGGGCCACTTTACATTTCTTGCTGTGAC
TACAGCAACCACATACAGTACAGACAACCTCAAAATTTGTTTTTATTAGTGTAAATAGAA
AAACCGTATACAGCTTTCTAGCTTTCTTTGCAGGCATTTTTTGGGACTGTGTCTGTAGTG
TGTTCTACTTTGTGTATGGTGGTAGCAGCACATCCCAGATTATCTGTCAACTTTGGGATC
ATCTTCTCAATTGCCCACTTGTATCCTGGAGTCAGTCCATCCTTTACGGCTGAATAGAGG
CAAGGTTTCTTTGTGTGATTGAACTTTGAAACCTCCCACTGTCCAAATGTAATCGGGAAC
TACTTTCCCATAGCTCAGCCATGCCTTGCTCTCCTGTATCGTCATTCCCCATTTGCCAAG
ATATGTTACCTTTGTCCTGGAATTATGCTAAACTTTACTTACATCTGTTGTTCCCCAAAC
TACTAGTTTCTAAGTACATTCTCTGGTTCTTTGCTGTGCTCCACTAGCTTGATTCATTGA
TTTGCACTTTGCTCACTGGAGAGCAGTGTCAGAGTTGGTGAGTACATCATAATACTGGGT
TGCTGTGTGCACAGCACATAAATACCAGAAGTAGGGCCCTTTAAATTATATTGTATTTAA
CATTTTAATACTTATTTTAGCTTTACATGTTGAAAAGTAGATTCAGAAAGTTAAGAGAAC
TACCTAGACTCTGCCAGCTCCTTGAGCTAATAATTAGATGTGAAAGGGATCAAGTTATAT
GTGTATTATCTTCCCATTACCAAAAATGGGTTACACTTTGAAGAATATCAGTACAAATAA
TTTGAGTTGGAAAAAGACACCAAAGTCATATGTAGTGTTTAACCTCAAGACATCCCCCAT
CCTTAAGGCCATAGAGCGCATTCCGTTTTTTCTCTCATGTTTACTTAATGAACAAAGATA
AATGTTAGCTATCTAAAGGAATTAGTAATGAGAAGCCTATCTTACAAAATAAACCTATTG
AAATAGACCTTTATAAGACATCAAAATTATCAGTCGTTATGTATTGATATTGTAGATAGA
AAATATTTTTTAATAAAAAGTTCCACTTTTACAAAAATTAAACTGTATCATGCTCTGTCA
AAGAATGTATGCTAATTTTAAGACCAGAATGGTAGAGTAAAGGAAAGAAAGACAGATTTT
TAAAAGTTTTGGATGCTAAAAACTGACTGTTTCTATTAAACCCTAAATTGTGTGTGGAAA
TATGGAGAAATTGTAACAAGATGCAGTTGGGTTAATTATGCAATATTTCTTATCAGTTGC
TTAGCCCTTGTGTATTCTAAAAGCTAAAGTTTAAATCTTTATGGTCTTGCCTGCTAGATA
TTCTGTTCTTTGGTAGAAAATTCCCATAGTCTGTACTCAACAAGTGCCTAAAATTGATTT
GTGTTGATTTTTAAGTCCATCTAATAAATTATATGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAAGGCAGGAAGTCCCTGAGGTGTTCTTTTCTTTTTCGTCTGAGTGTATAGTGTTAAGA
TGCCTAGAAAAGGGACTCTGCTGTCCCTTCTTAGGGCCACTTTACATTTCTTGCTGTGAC
TACAGCAACCACATACAGTACAGACAACCTCAAAATTTGTTTTTATTAGTGTAAATAGAA
AAACCGTATACAGCTTTCTAGCTTTCTTTGCAGGCATTTTTTGGGACTGTGTCTGTAGTG
TGTTCTACTTTGTGTATGGTGGTAGCAGCACATCCCAGATTATCTGTCAACTTTGGGATC
ATCTTCTCAATTGCCCACTTGTATCCTGGAGTCAGTCCATCCTTTACGGCTGAATAGAGG
CAAGGTTTCTTTGTGTGATTGAACTTTGAAACCTCCCACTGTCCAAATGTAATCGGGAAC
TACTTTCCCATAGCTCAGCCATGCCTTGCTCTCCTGTATCGTCATTCCCCATTTGCCAAG
ATATGTTACCTTTGTCCTGGAATTATGCTAAACTTTACTTACATCTGTTGTTCCCCAAAC
TACTAGTTTCTAAGTACATTCTCTGGTTCTTTGCTGTGCTCCACTAGCTTGATTCATTGA
TTTGCACTTTGCTCACTGGAGAGCAGTGTCAGAGTTGGTGAGTACATCATAATACTGGGT
TGCTGTGTGCACAGCACATAAATACCAGAAGTAGGGCCCTTTAAATTATATTGTATTTAA
CATTTTAATACTTATTTTAGCTTTACATGTTGAAAAGTAGATTCAGAAAGTTAAGAGAAC
TACCTAGACTCTGCCAGCTCCTTGAGCTAATAATTAGATGTGAAAGGGATCAAGTTATAT
GTGTATTATCTTCCCATTACCAAAAATGGGTTACACTTTGAAGAATATCAGTACAAATAA
TTTGAGTTGGAAAAAGACACCAAAGTCATATGTAGTGTTTAACCTCAAGACATCCCCCAT
CCTTAAGGCCATAGAGCGCATTCCGTTTTTTCTCTCATGTTTACTTAATGAACAAAGATA
AATGTTAGCTATCTAAAGGAATTAGTAATGAGAAGCCTATCTTACAAAATAAACCTATTG
AAATAGACCTTTATAAGACATCAAAATTATCAGTCGTTATGTATTGATATTGTAGATAGA
AAATATTTTTTAATAAAAAGTTCCACTTTTACAAAAATTAAACTGTATCATGCTCTGTCA
AAGAATGTATGCTAATTTTAAGACCAGAATGGTAGAGTAAAGGAAAGAAAGACAGATTTT
TAAAAGTTTTGGATGCTAAAAACTGACTGTTTCTATTAAACCCTAAATTGTGTGTGGAAA
TATGGAGAAATTGTAACAAGATGCAGTTGGGTTAATTATGCAATATTTCTTATCAGTTGC
TTAGCCCTTGTGTATTCTAAAAGCTAAAGTTTAAATCTTTATGGTCTTGCCTGCTAGATA
TTCTGTTCTTTGGTAGAAAATTCCCATAGTCTGTACTCAACAAGTGCCTAAAATTGATTT
GTGTTGATTTTTAAGTCCATCTAATAAATTATATGT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               4-159, - strand, RNAz p=0.936906

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               4-159, - strand, RNAz p=0.936906

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               39-119, - strand, RNAmicro p=0.91136

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               39-119, - strand, RNAmicro p=0.91136

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-1536, gnl|bosTau2|chr2 (29522270-29523803)
               

               
               4-1536, gnl|Hg17|chr2 (152482377-152480832)
               

               
               4-1536, gnl|Mm7|chr2 (52406915-52405275)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-1536, gnl|bosTau2|chr2 (29522270-29523803)
               

               
               4-1536, gnl|Hg17|chr2 (152482377-152480832)
               

               
               4-1536, gnl|Mm7|chr2 (52406915-52405275)

Expressed library(ies): 15 entry(ies)

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Expressed library(ies): 15 entry(ies)

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               ret (0.643666)
               

               
               vin (0.332557)
               

               
               liv (0.292569)
               

               
               clu (0.239292)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               sto (0.179824)
               

               
               fty (0.17584)
               

               
               eye (0.170503)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               thg (0.126791)
               

               
               eep (0.122564)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.643666)
               

               
               vin (0.332557)
               

               
               liv (0.292569)
               

               
               clu (0.239292)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               sto (0.179824)
               

               
               fty (0.17584)
               

               
               eye (0.170503)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               thg (0.126791)
               

               
               eep (0.122564)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

	4-1536, gnl\|bosTau2\|chr2 (29522270-29523803)
	4-1536, gnl\|Hg17\|chr2 (152482377-152480832)
	4-1536, gnl\|Mm7\|chr2 (52406915-52405275)

	ret (0.643666)
	vin (0.332557)
	liv (0.292569)
	clu (0.239292)
	tes (0.207814)
	fcc (0.197785)
	sto (0.179824)
	fty (0.17584)
	eye (0.170503)
	fco (0.157208)
	tbr (0.154178)
	thg (0.126791)
	eep (0.122564)
	cty (0.10408)
	nbm (0.0993246)