Ss1.1-Pig4-TMW8023F13.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGTAGAGGAGCCGGGAAGATGGCGGCTGTGGTGGAAAATGTAGTGAAGCTCCTTGGGGA GCAGTATTACAAAGATGCCATGGAGCAGTGCCACAATTACAATGCCCGCCTCTGCGCTGA GCGCAGCGTACGCCTGCCTTTCTTGGACTCACAGACTGGGGTAGCCCAAAGCAACTGTTA TATCTGGATGGAAAAGCGACACCGGGGTCCAGGATTGGCCTCTGGGCAGCTGTATTCCTA CCCTGCCCGGCGCTGGCGGAAAAAGCGGCGCGCTCACCCTCCTGAGGATCCTAGGCTTTC CTTCCCATCTATTAAACCAGACACAGACCAGACCCTGAAGAAGGAGGGCCTGATCTCTCA GGACGGCAGTAGTTTAGAGGCTCTGCTGCGCACTGACCCCATGGAGAAGCGAGGTGCCCC AGATCCCCGAGTTGATGATGACAGCCTGGGCGAATTTCCTGTGACAAACAGTCGAGCACG GAAGCGGATCCTAGAACCGGATGACTTCCTGGATGACCTCGATGATGAGGACTATGAAGA AGACACTCCCAAGCGTCGGGGCAAGGGGAAGTCCAAGGGTAAAGGTGTGGGCAGTGCCCG TAAGAAGCTGGACGCTTCCATCCTGGAGGATCGGGACAAACCCTATGCCTGTGACATTTG CGGAAAACGTTACAAGAACCGACCAGGCCTCAGCTACCACTATGCCCATTCCCACCTGGC TGAGGAGGAGGGCGAGGACAAGGAGGACTCGCAGCCACCCACCCCGGTTTCCCAGAGGTC TGAGGAGCAGAAATCCAAGAAGGGTCCATGCCAGGACACCCTGGAGTGTCCTTCCCCCTT GGCTGTGGGCAGGCCCTAATTCACTCTCACTTTGGAGTTGAGGTGTCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGTAGAGGAGCCGGGAAGATGGCGGCTGTGGTGGAAAATGTAGTGAAGCTCCTTGGGGA GCAGTATTACAAAGATGCCATGGAGCAGTGCCACAATTACAATGCCCGCCTCTGCGCTGA GCGCAGCGTACGCCTGCCTTTCTTGGACTCACAGACTGGGGTAGCCCAAAGCAACTGTTA TATCTGGATGGAAAAGCGACACCGGGGTCCAGGATTGGCCTCTGGGCAGCTGTATTCCTA CCCTGCCCGGCGCTGGCGGAAAAAGCGGCGCGCTCACCCTCCTGAGGATCCTAGGCTTTC CTTCCCATCTATTAAACCAGACACAGACCAGACCCTGAAGAAGGAGGGCCTGATCTCTCA GGACGGCAGTAGTTTAGAGGCTCTGCTGCGCACTGACCCCATGGAGAAGCGAGGTGCCCC AGATCCCCGAGTTGATGATGACAGCCTGGGCGAATTTCCTGTGACAAACAGTCGAGCACG GAAGCGGATCCTAGAACCGGATGACTTCCTGGATGACCTCGATGATGAGGACTATGAAGA AGACACTCCCAAGCGTCGGGGCAAGGGGAAGTCCAAGGGTAAAGGTGTGGGCAGTGCCCG TAAGAAGCTGGACGCTTCCATCCTGGAGGATCGGGACAAACCCTATGCCTGTGACATTTG CGGAAAACGTTACAAGAACCGACCAGGCCTCAGCTACCACTATGCCCATTCCCACCTGGC TGAGGAGGAGGGCGAGGACAAGGAGGACTCGCAGCCACCCACCCCGGTTTCCCAGAGGTC TGAGGAGCAGAAATCCAAGAAGGGTCCATGCCAGGACACCCTGGAGTGTCCTTCCCCCTT GGCTGTGGGCAGGCCCTAATTCACTCTCACTTTGGAGTTGAGGTGTCT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 53-213, gnl|bosTau2|chr10 (51219444-51219284) | |
| 53-213, gnl|Hg17|chr14 (72308353-72308193) | |
| 53-213, gnl|Mm7|chr12 (81366637-81366477) | |
| 318-484, gnl|bosTau2|chr29 (34464237-34464403) | |
| 318-484, gnl|Hg17|chr11 (64865443-64865609) | |
| 318-484, gnl|Mm7|chr19 (5800361-5800195) | |
| 657-827, gnl|bosTau2|chr29 (34467086-34467257) | |
| 657-827, gnl|canFam2|chr18 (54863161-54863016) | |
| 657-827, gnl|canFam2|chr18 (54863021-54863158) | |
| 657-827, gnl|danRer3|chr14 (23859024-23859155) | |
| 657-827, gnl|danRer3|chr5 (39498740-39498624) | |
| 657-827, gnl|dasNov1|scaffold_1974 (64815-64959) | |
| 657-827, gnl|dasNov1|scaffold_1974 (64953-64818) | |
| 657-827, gnl|echTel1|scaffold_170152 (2603-2459) | |
| 657-827, gnl|echTel1|scaffold_289406 (1453-1335) | |
| 657-827, gnl|fr1|chrUn (4363999-4363854) | |
| 657-827, gnl|fr1|chrUn (4363859-4363996) | |
| 657-827, gnl|hg17|chr11 (64869711-64869856) | |
| 657-827, gnl|Hg17|chr11 (64869713-64869888) | |
| 657-827, gnl|hg17|chr6 (131547558-131547692) | |
| 657-827, gnl|loxAfr1|scaffold_47509 (10167-10022) | |
| 657-827, gnl|loxAfr1|scaffold_47509 (10027-10164) | |
| 657-827, gnl|mm7|chr19 (5797578-5797433) | |
| 657-827, gnl|mm7|chr19 (5797438-5797575) | |
| 657-827, gnl|Mm7|chr19 (5797574-5797398) | |
| 657-827, gnl|monDom2|scaffold_107 (3377679-3377535) | |
| 657-827, gnl|monDom2|scaffold_107 (3377540-3377677) | |
| 657-827, gnl|oryCun1|scaffold_206317 (97008-97153) | |
| 657-827, gnl|oryCun1|scaffold_206317 (97148-97011) | |
| 657-827, gnl|panTro1|chr5_random (7872471-7872337) | |
| 657-827, gnl|panTro1|chr9 (66113463-66113608) | |
| 657-827, gnl|rheMac2|chr14 (9102185-9102039) | |
| 657-827, gnl|rheMac2|chr4 (132709605-132709468) | |
| 657-827, gnl|rn3|chr1 (208688854-208688709) | |
| 657-827, gnl|rn3|chr1 (208688714-208688851) | |
| 657-827, gnl|tetNig1|chr7 (4703028-4703173) | |
| 657-827, gnl|tetNig1|chr7 (4703168-4703031) | |
| 657-827, gnl|xenTro1|scaffold_251 (680344-680498) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 53-213, gnl|bosTau2|chr10 (51219444-51219284) | |
| 53-213, gnl|Hg17|chr14 (72308353-72308193) | |
| 53-213, gnl|Mm7|chr12 (81366637-81366477) | |
| 318-484, gnl|bosTau2|chr29 (34464237-34464403) | |
| 318-484, gnl|Hg17|chr11 (64865443-64865609) | |
| 318-484, gnl|Mm7|chr19 (5800361-5800195) | |
| 657-827, gnl|bosTau2|chr29 (34467086-34467257) | |
| 657-827, gnl|canFam2|chr18 (54863161-54863016) | |
| 657-827, gnl|canFam2|chr18 (54863021-54863158) | |
| 657-827, gnl|danRer3|chr14 (23859024-23859155) | |
| 657-827, gnl|danRer3|chr5 (39498740-39498624) | |
| 657-827, gnl|dasNov1|scaffold_1974 (64815-64959) | |
| 657-827, gnl|dasNov1|scaffold_1974 (64953-64818) | |
| 657-827, gnl|echTel1|scaffold_170152 (2603-2459) | |
| 657-827, gnl|echTel1|scaffold_289406 (1453-1335) | |
| 657-827, gnl|fr1|chrUn (4363999-4363854) | |
| 657-827, gnl|fr1|chrUn (4363859-4363996) | |
| 657-827, gnl|hg17|chr11 (64869711-64869856) | |
| 657-827, gnl|Hg17|chr11 (64869713-64869888) | |
| 657-827, gnl|hg17|chr6 (131547558-131547692) | |
| 657-827, gnl|loxAfr1|scaffold_47509 (10167-10022) | |
| 657-827, gnl|loxAfr1|scaffold_47509 (10027-10164) | |
| 657-827, gnl|mm7|chr19 (5797578-5797433) | |
| 657-827, gnl|mm7|chr19 (5797438-5797575) | |
| 657-827, gnl|Mm7|chr19 (5797574-5797398) | |
| 657-827, gnl|monDom2|scaffold_107 (3377679-3377535) | |
| 657-827, gnl|monDom2|scaffold_107 (3377540-3377677) | |
| 657-827, gnl|oryCun1|scaffold_206317 (97008-97153) | |
| 657-827, gnl|oryCun1|scaffold_206317 (97148-97011) | |
| 657-827, gnl|panTro1|chr5_random (7872471-7872337) | |
| 657-827, gnl|panTro1|chr9 (66113463-66113608) | |
| 657-827, gnl|rheMac2|chr14 (9102185-9102039) | |
| 657-827, gnl|rheMac2|chr4 (132709605-132709468) | |
| 657-827, gnl|rn3|chr1 (208688854-208688709) | |
| 657-827, gnl|rn3|chr1 (208688714-208688851) | |
| 657-827, gnl|tetNig1|chr7 (4703028-4703173) | |
| 657-827, gnl|tetNig1|chr7 (4703168-4703031) | |
| 657-827, gnl|xenTro1|scaffold_251 (680344-680498) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (0.122564) | |
| clu (0.119646) | |
| med (0.116252) |