Ss1.1-Pig4-TMW8023F14.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCGCTAGCTAGCCTCTCGGAACTTCAGCTCCAGCATCGGCATGTTGCGCCCTGCTGCGCT TGCCGCCGCCCGCCTCGTGCTCCGCCAGGGCCGCCGCCTATTATCGGCCGCCCCTACCCA GGCGGTGCCGGCCCCCAACCAGCAGCCCGAGATCTTCTACAACCAGATCTTCATAAACAA TGAGTGGCATGATGCTATCAGCAAGAAAACTTTCCCTACCGTCAATCCATCCACTGGGGA TGTCATCTGTCATGTAGCTGAAGGAGACAAGGAAGATGTGGACAGGGCAGTGGAAGCTGC CCGGGCTGCATTCCAGCTGGGCTCACCCTGGCGTCGCCTGGATGCATCTGACAGGGGCCG GCTGCTGAACCGCCTGGCCGATTTGATTGAGCGGGACCGGACCTACCTAGCGGCACTGGA GACCCTGGACAACGGCAAGCCCTATGTCATCTCTTACCTGGTAGATTTGGACATGGTCCT CAAGTGTCTCCGTTACTATGCTGGCTGGGCTGATAAGTACCATGGTAAAACCCTTCCCAT CGACGGGGACTACTTCAGCTACACTCGCCATGAGCCTGTGGGAGTGTGTGGGCAGATCAT CCCGTGGAACTTCCCGCTCTTGATGCAAGCGTGGAAACTGGGCCCAGCCTTGGCGACTGG AAACGTGGTTGTGATGAAGGTTTCTGAGCAGACTCCACTCACTGCCCTCTATGTGGCCAA CTTGATTAAGGAGGCCGGCTTTCCTCCTGGCGTGGTCAATATTGTTCCTGGATATGGCCC AACAGCCGGGGCTGCCATCGCCTCTCATGAGGATGTGGACAAAGTGGCCTTCACAGGCTC CACTGAGGTTGGCCACCTCATCCAGGTTGCTGCAGGGAAGAGTAACCTCAAGAGAGTGAC CCTGGAGCTAGGAGGAAAGAGCCCCAATATCATCATGTCAGATGCTGATATGGACTGGGC TGTGGAGCAGGCCCACTTCGCCCTGTTCTTCAACCAGGGCCAGTGCTGCTGTGCGGGCTC CCGGACCTTTGTGCAGGAGGACATTTATGCTGAGTTTGTGGAGCGGAGTGTTGCCCGGGC CAGGTCTCGTGTGGTGGGGAACCCTTTTGACAGCCGGACTGAGCAGGGGCCGCAGATAGA TGAAACTCAGTTTAAGAAGATTCTTGGCTACATCAAGTCTGGGAAGGAGGAAGGGGCGAA ACTGCTCTGCGGTGGAGGGGCGGCTGCTGACCGTGGCTACTTCATCCAGCCCACCGTGTT TGGAGATGTGCAAGATGGCATGACCATTGCAAAGGAGGAGATCTTTGGGCCAGTGATGCA GATTCTCAAGTTCAAGACCATAGAGGAAGTCATTGGGAGAGCCAACAATTCCAAGTACGG GCTGGCCGCAGCTGTCTTCACAAAGGACTTAGACAAGGCCAATTATCTGTCTCAAGCCCT TCAGGCTGGCACCGTGTGGGTCAACTGCTATGACGTGTTTGGGGCCCAGTCACCGTTTGG TGGCTACAAACTGTCTGGGAGTGGCCGGGAGCTGGGAGAGTATGGGCTGCAGGCATACAC GGAAGTAAAAACTGTCACAGTCAAAGTTCCTCAGAAGAACTCATAAAGAACCATGCTGGC TTTCTTACTCATCCAGTGACGTAAACTTCAAGGACATAAGCAACAAAACCACGAAAAAGG ACCCTTGCACAATAAAGTTCTCAAAAGAGAAATTCTACCAGAAAAATCTCTTGGATCAAG AAAGTTCCAGAATTTTAATCAATAAATAGGGTGGGTGTGGGGCAAAAGGTACATGGAAAG CCTTTTAAACTACAACAATGCTACTAGCTTTCGGGCTGCCTTTTCAAACATAAGATTGAA ATGTCTCATCCTGTCCATCTGATACACTTCTGTAACTTGCCTTAATGGGGGAAGAAAAAG CCATTGTTTACCACTGTACTATCATTGAGGCAACTAGCACCTTGCTTTGTATTCTGGACT AAAACTCATTAAAAACAATACTACTGTTCAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCGCTAGCTAGCCTCTCGGAACTTCAGCTCCAGCATCGGCATGTTGCGCCCTGCTGCGCT TGCCGCCGCCCGCCTCGTGCTCCGCCAGGGCCGCCGCCTATTATCGGCCGCCCCTACCCA GGCGGTGCCGGCCCCCAACCAGCAGCCCGAGATCTTCTACAACCAGATCTTCATAAACAA TGAGTGGCATGATGCTATCAGCAAGAAAACTTTCCCTACCGTCAATCCATCCACTGGGGA TGTCATCTGTCATGTAGCTGAAGGAGACAAGGAAGATGTGGACAGGGCAGTGGAAGCTGC CCGGGCTGCATTCCAGCTGGGCTCACCCTGGCGTCGCCTGGATGCATCTGACAGGGGCCG GCTGCTGAACCGCCTGGCCGATTTGATTGAGCGGGACCGGACCTACCTAGCGGCACTGGA GACCCTGGACAACGGCAAGCCCTATGTCATCTCTTACCTGGTAGATTTGGACATGGTCCT CAAGTGTCTCCGTTACTATGCTGGCTGGGCTGATAAGTACCATGGTAAAACCCTTCCCAT CGACGGGGACTACTTCAGCTACACTCGCCATGAGCCTGTGGGAGTGTGTGGGCAGATCAT CCCGTGGAACTTCCCGCTCTTGATGCAAGCGTGGAAACTGGGCCCAGCCTTGGCGACTGG AAACGTGGTTGTGATGAAGGTTTCTGAGCAGACTCCACTCACTGCCCTCTATGTGGCCAA CTTGATTAAGGAGGCCGGCTTTCCTCCTGGCGTGGTCAATATTGTTCCTGGATATGGCCC AACAGCCGGGGCTGCCATCGCCTCTCATGAGGATGTGGACAAAGTGGCCTTCACAGGCTC CACTGAGGTTGGCCACCTCATCCAGGTTGCTGCAGGGAAGAGTAACCTCAAGAGAGTGAC CCTGGAGCTAGGAGGAAAGAGCCCCAATATCATCATGTCAGATGCTGATATGGACTGGGC TGTGGAGCAGGCCCACTTCGCCCTGTTCTTCAACCAGGGCCAGTGCTGCTGTGCGGGCTC CCGGACCTTTGTGCAGGAGGACATTTATGCTGAGTTTGTGGAGCGGAGTGTTGCCCGGGC CAGGTCTCGTGTGGTGGGGAACCCTTTTGACAGCCGGACTGAGCAGGGGCCGCAGATAGA TGAAACTCAGTTTAAGAAGATTCTTGGCTACATCAAGTCTGGGAAGGAGGAAGGGGCGAA ACTGCTCTGCGGTGGAGGGGCGGCTGCTGACCGTGGCTACTTCATCCAGCCCACCGTGTT TGGAGATGTGCAAGATGGCATGACCATTGCAAAGGAGGAGATCTTTGGGCCAGTGATGCA GATTCTCAAGTTCAAGACCATAGAGGAAGTCATTGGGAGAGCCAACAATTCCAAGTACGG GCTGGCCGCAGCTGTCTTCACAAAGGACTTAGACAAGGCCAATTATCTGTCTCAAGCCCT TCAGGCTGGCACCGTGTGGGTCAACTGCTATGACGTGTTTGGGGCCCAGTCACCGTTTGG TGGCTACAAACTGTCTGGGAGTGGCCGGGAGCTGGGAGAGTATGGGCTGCAGGCATACAC GGAAGTAAAAACTGTCACAGTCAAAGTTCCTCAGAAGAACTCATAAAGAACCATGCTGGC TTTCTTACTCATCCAGTGACGTAAACTTCAAGGACATAAGCAACAAAACCACGAAAAAGG ACCCTTGCACAATAAAGTTCTCAAAAGAGAAATTCTACCAGAAAAATCTCTTGGATCAAG AAAGTTCCAGAATTTTAATCAATAAATAGGGTGGGTGTGGGGCAAAAGGTACATGGAAAG CCTTTTAAACTACAACAATGCTACTAGCTTTCGGGCTGCCTTTTCAAACATAAGATTGAA ATGTCTCATCCTGTCCATCTGATACACTTCTGTAACTTGCCTTAATGGGGGAAGAAAAAG CCATTGTTTACCACTGTACTATCATTGAGGCAACTAGCACCTTGCTTTGTATTCTGGACT AAAACTCATTAAAAACAATACTACTGTTCAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 57 entry(ies) | More info |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
| 25-166, gnl|bosTau2|chr17 (38706340-38706478) | |
| 25-166, gnl|canFam2|chr26 (12336859-12337158) | |
| 25-166, gnl|echTel1|scaffold_244378 (235-525) | |
| 25-166, gnl|hg17|chr12 (110667378-110667650) | |
| 25-166, gnl|Hg17|chr12 (110667491-110667620) | |
| 25-166, gnl|mm7|chr5 (120827914-120827610) | |
| 25-166, gnl|Mm7|chr5 (120827762-120827624) | |
| 25-166, gnl|rheMac2|chr11 (112707034-112707308) | |
| 25-166, gnl|rn3|chr12 (35945024-35945332) | |
| 270-411, gnl|bosTau2|chr17 (38718018-38718159) | |
| 270-411, gnl|canFam2|chr26 (12355883-12356058) | |
| 270-411, gnl|danRer3|chrUn (71156964-71156798) | |
| 270-411, gnl|dasNov1|scaffold_31556 (45681-45540) | |
| 270-411, gnl|echTel1|scaffold_303704 (2483-2631) | |
| 270-411, gnl|fr1|chrUn (227062599-227062450) | |
| 270-411, gnl|galGal2|chr15 (6160204-6160352) | |
| 270-411, gnl|hg17|chr12 (110683681-110683858) | |
| 270-411, gnl|Hg17|chr12 (110683680-110683821) | |
| 270-411, gnl|loxAfr1|scaffold_14197 (39872-40005) | |
| 270-411, gnl|mm7|chr5 (120814008-120813832) | |
| 270-411, gnl|Mm7|chr5 (120814007-120813866) | |
| 270-411, gnl|monDom2|scaffold_203 (267259-267086) | |
| 270-411, gnl|oryCun1|scaffold_176895 (25848-25991) | |
| 270-411, gnl|rheMac2|chr11 (112724191-112724368) | |
| 270-411, gnl|rn3|chr12 (35965600-35965775) | |
| 270-411, gnl|tetNig1|chrUn_random (128548191-128548042) | |
| 270-411, gnl|xenTro1|scaffold_501 (183193-183341) | |
| 571-734, gnl|bosTau2|chr17 (38721886-38722048) | |
| 571-734, gnl|Hg17|chr12 (110690925-110691087) | |
| 571-734, gnl|Mm7|chr5 (120810304-120810156) | |
| 838-950, gnl|bosTau2|chr17 (38724565-38724677) | |
| 838-950, gnl|Hg17|chr12 (110692575-110692687) | |
| 838-950, gnl|Mm7|chr5 (120807796-120807684) | |
| 951-1145, gnl|bosTau2|chr10 (34341154-34341347) | |
| 951-1145, gnl|Hg17|chr15 (56043559-56043366) | |
| 951-1145, gnl|Mm7|chr9 (71317760-71317952) | |
| 1299-1459, gnl|bosTau2|chr17 (38729582-38729742) | |
| 1299-1459, gnl|canFam2|chr26 (12369309-12369500) | |
| 1299-1459, gnl|danRer3|chrUn (71136616-71136451) | |
| 1299-1459, gnl|dasNov1|scaffold_35237 (39381-39565) | |
| 1299-1459, gnl|echTel1|scaffold_6123 (8835-8647) | |
| 1299-1459, gnl|fr1|chrUn (291286638-291286811) | |
| 1299-1459, gnl|galGal2|chr15 (6164389-6164553) | |
| 1299-1459, gnl|hg17|chr12 (110700406-110700594) | |
| 1299-1459, gnl|Hg17|chr12 (110700428-110700588) | |
| 1299-1459, gnl|loxAfr1|scaffold_14197 (40883-41043) | |
| 1299-1459, gnl|mm7|chr5 (120805047-120804861) | |
| 1299-1459, gnl|Mm7|chr5 (120805024-120804864) | |
| 1299-1459, gnl|monDom2|scaffold_203 (255038-254850) | |
| 1299-1459, gnl|oryCun1|scaffold_83095 (5095-5280) | |
| 1299-1459, gnl|panTro1|chr10 (113303719-113303907) | |
| 1299-1459, gnl|rheMac2|chr11 (112739082-112739270) | |
| 1299-1459, gnl|rn3|chr12 (35975691-35975878) | |
| 1299-1459, gnl|tetNig1|chrUn_random (128545776-128545597) | |
| 1299-1459, gnl|xenTro1|scaffold_501 (193573-193761) | |
| 1574-2010, gnl|bosTau2|chr17 (38731371-38731798) | |
| 1574-2010, gnl|Hg17|chr12 (110710067-110710504) |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 25-166, gnl|bosTau2|chr17 (38706340-38706478) | |
| 25-166, gnl|canFam2|chr26 (12336859-12337158) | |
| 25-166, gnl|echTel1|scaffold_244378 (235-525) | |
| 25-166, gnl|hg17|chr12 (110667378-110667650) | |
| 25-166, gnl|Hg17|chr12 (110667491-110667620) | |
| 25-166, gnl|mm7|chr5 (120827914-120827610) | |
| 25-166, gnl|Mm7|chr5 (120827762-120827624) | |
| 25-166, gnl|rheMac2|chr11 (112707034-112707308) | |
| 25-166, gnl|rn3|chr12 (35945024-35945332) | |
| 270-411, gnl|bosTau2|chr17 (38718018-38718159) | |
| 270-411, gnl|canFam2|chr26 (12355883-12356058) | |
| 270-411, gnl|danRer3|chrUn (71156964-71156798) | |
| 270-411, gnl|dasNov1|scaffold_31556 (45681-45540) | |
| 270-411, gnl|echTel1|scaffold_303704 (2483-2631) | |
| 270-411, gnl|fr1|chrUn (227062599-227062450) | |
| 270-411, gnl|galGal2|chr15 (6160204-6160352) | |
| 270-411, gnl|hg17|chr12 (110683681-110683858) | |
| 270-411, gnl|Hg17|chr12 (110683680-110683821) | |
| 270-411, gnl|loxAfr1|scaffold_14197 (39872-40005) | |
| 270-411, gnl|mm7|chr5 (120814008-120813832) | |
| 270-411, gnl|Mm7|chr5 (120814007-120813866) | |
| 270-411, gnl|monDom2|scaffold_203 (267259-267086) | |
| 270-411, gnl|oryCun1|scaffold_176895 (25848-25991) | |
| 270-411, gnl|rheMac2|chr11 (112724191-112724368) | |
| 270-411, gnl|rn3|chr12 (35965600-35965775) | |
| 270-411, gnl|tetNig1|chrUn_random (128548191-128548042) | |
| 270-411, gnl|xenTro1|scaffold_501 (183193-183341) | |
| 571-734, gnl|bosTau2|chr17 (38721886-38722048) | |
| 571-734, gnl|Hg17|chr12 (110690925-110691087) | |
| 571-734, gnl|Mm7|chr5 (120810304-120810156) | |
| 838-950, gnl|bosTau2|chr17 (38724565-38724677) | |
| 838-950, gnl|Hg17|chr12 (110692575-110692687) | |
| 838-950, gnl|Mm7|chr5 (120807796-120807684) | |
| 951-1145, gnl|bosTau2|chr10 (34341154-34341347) | |
| 951-1145, gnl|Hg17|chr15 (56043559-56043366) | |
| 951-1145, gnl|Mm7|chr9 (71317760-71317952) | |
| 1299-1459, gnl|bosTau2|chr17 (38729582-38729742) | |
| 1299-1459, gnl|canFam2|chr26 (12369309-12369500) | |
| 1299-1459, gnl|danRer3|chrUn (71136616-71136451) | |
| 1299-1459, gnl|dasNov1|scaffold_35237 (39381-39565) | |
| 1299-1459, gnl|echTel1|scaffold_6123 (8835-8647) | |
| 1299-1459, gnl|fr1|chrUn (291286638-291286811) | |
| 1299-1459, gnl|galGal2|chr15 (6164389-6164553) | |
| 1299-1459, gnl|hg17|chr12 (110700406-110700594) | |
| 1299-1459, gnl|Hg17|chr12 (110700428-110700588) | |
| 1299-1459, gnl|loxAfr1|scaffold_14197 (40883-41043) | |
| 1299-1459, gnl|mm7|chr5 (120805047-120804861) | |
| 1299-1459, gnl|Mm7|chr5 (120805024-120804864) | |
| 1299-1459, gnl|monDom2|scaffold_203 (255038-254850) | |
| 1299-1459, gnl|oryCun1|scaffold_83095 (5095-5280) | |
| 1299-1459, gnl|panTro1|chr10 (113303719-113303907) | |
| 1299-1459, gnl|rheMac2|chr11 (112739082-112739270) | |
| 1299-1459, gnl|rn3|chr12 (35975691-35975878) | |
| 1299-1459, gnl|tetNig1|chrUn_random (128545776-128545597) | |
| 1299-1459, gnl|xenTro1|scaffold_501 (193573-193761) | |
| 1574-2010, gnl|bosTau2|chr17 (38731371-38731798) | |
| 1574-2010, gnl|Hg17|chr12 (110710067-110710504) |
| Expressed library(ies): 33 entry(ies) | More info |
| Expressed library(ies): 33 entry(ies) | Help | Less info |
| sme (1.22175) | |
| lun (1.05342) | |
| pro (1.02407) | |
| ste (0.946458) | |
| amn (0.835422) | |
| mga (0.801025) | |
| ldo (0.776021) | |
| sug (0.763747) | |
| ssp (0.677599) | |
| tbr (0.616713) | |
| sin (0.524843) | |
| ova (0.516529) | |
| nje (0.49776) | |
| cli (0.458435) | |
| bla (0.373042) | |
| fbs (0.350693) | |
| spc (0.340097) | |
| vin (0.332557) | |
| isp (0.300752) | |
| eje (0.296501) | |
| lnt (0.284616) | |
| cst (0.280073) | |
| kid (0.259471) | |
| ret (0.257467) | |
| jca (0.22792) | |
| ill (0.175593) | |
| cje (0.165235) | |
| ctl (0.153069) | |
| bfe (0.149858) | |
| fat (0.147427) | |
| cov (0.132153) | |
| pgl (0.118483) | |
| ecc (0.115035) |
| Expressed library(ies): 33 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sme (1.22175) | |
| lun (1.05342) | |
| pro (1.02407) | |
| ste (0.946458) | |
| amn (0.835422) | |
| mga (0.801025) | |
| ldo (0.776021) | |
| sug (0.763747) | |
| ssp (0.677599) | |
| tbr (0.616713) | |
| sin (0.524843) | |
| ova (0.516529) | |
| nje (0.49776) | |
| cli (0.458435) | |
| bla (0.373042) | |
| fbs (0.350693) | |
| spc (0.340097) | |
| vin (0.332557) | |
| isp (0.300752) | |
| eje (0.296501) | |
| lnt (0.284616) | |
| cst (0.280073) | |
| kid (0.259471) | |
| ret (0.257467) | |
| jca (0.22792) | |
| ill (0.175593) | |
| cje (0.165235) | |
| ctl (0.153069) | |
| bfe (0.149858) | |
| fat (0.147427) | |
| cov (0.132153) | |
| pgl (0.118483) | |
| ecc (0.115035) |