Ss1.1-Pig4-TMW8023F23.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAAACTTTATTACGCTCCATGCATCCAGGGAGCTCATACATGCACACACACTCACACAGG CACACAGCTAATACTGCTCACGGCACTGGCCACGGGCACAGTGGCCCTAGTGTTGAGAAG AGGCTGAGAGTTGCACTCTGTTCCCTCCTCACTGTAGTCTCCTGCACGGCAGGCTGGGGC ACAGATGTAGGAGGCAGCGCCTTCACACTTCTAAGCCAGGACCCTTGCTCAGTCCTAGTG CCTGAACTAGGTCCTCCCCAAGGCCACTCTTCAATGTCCGTCTCAAAGACTTGCGGTTGC CACGGGAACGCTTGCGCTCCCGAGTGGCTAAGGCACGAGGACTGCTCTTGGTCACCGACT GCACCAGCAGGTCCATGATCTCATCTGAAGTGTCACTGGGTAAAGTGGAGCCGGGAGGTT CTTCTGGGGGTACAGTGGAGGGCCCCACTGTGGTAGGCATGACTGGGGAGCTGTTCTGGA CATTGCCTCTGCTGCGGCGGCCGTGTGTGGCGTCCTCAGGCTTGCTGGCCAGCAGACTCT TCATGCTGGCGTGACTGTCGGCATCCCCTCTTCCTGGCCCACTGCTCACAGCCACTGGGA CAGATGGGTGGCTGGGAGTTTCCCCAGCCACACCTGAGAACTTCTCTGTCTCGGTGATCA TGCGTCCCCGGGTCTTGTTGCGCTCACGGTACGTGGCTCGCTTCTGCTGCTGCTGCAACA CCCGCTCCCGGCAAGTCCGATACTCCAGTGCAAACTCCCGCAGCGTGTGGCAGAACTGCA TGATGCGGACCTCACGGGCTGCCTCTGCCGTGTACCCCAGGTACAGCAGGAAGGCGTGGA ATCTGTTGCACACACGGCGGTGCACAACCCTCAGCATGGCAACACGGCGGGTACAGTGGG CCAGGAAGTGGGTGAGGCGGGCACGCAGGGCTGGAGCCAGCTCGTGCTTGGCCAGGCTCC TCAGGCTCTCCTCTGCTGCCCGGCTCCGGCGCTCCAGCTGCCCCAGGTTCTCAGTCAGCT GCTCAAAGTCCACCTTGGCACAGCGGGTCAGGGCAGGAATTTCTGAGTAGAGGTCAGAGG AATCGGGCCGGATCTGGAGCACCAGGGAGCAGAGATGATGCAGCAGTGACTGTCGGCGCA CCGTGTCCTTCACCTCTGACACCTTCTCCAGGTAGCTCAGCTCAAAGCCCCTGCTCTGGG AGCCATTGAGGAAGTTGCCCACAGCCAGAAGGGTGGCCAGGATGCAGCGGAAGGTGGCAT TTTGCACCAGCTGTTCCATGCCCACTTTCAGGTCAAACAGCGGCTCTGCGATTTCCCGCT CCATGCTGTCATAATCCAGCTTGAAGGCCCAGAGTTGTAGGCGGGCAGCCAGGCCTCCGA TGGAGGCGAGGGTCATCAGGAAGTTTTCGGCTGGGCCCAGGGGTATGTCAGGATTGGCTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAAACTTTATTACGCTCCATGCATCCAGGGAGCTCATACATGCACACACACTCACACAGG CACACAGCTAATACTGCTCACGGCACTGGCCACGGGCACAGTGGCCCTAGTGTTGAGAAG AGGCTGAGAGTTGCACTCTGTTCCCTCCTCACTGTAGTCTCCTGCACGGCAGGCTGGGGC ACAGATGTAGGAGGCAGCGCCTTCACACTTCTAAGCCAGGACCCTTGCTCAGTCCTAGTG CCTGAACTAGGTCCTCCCCAAGGCCACTCTTCAATGTCCGTCTCAAAGACTTGCGGTTGC CACGGGAACGCTTGCGCTCCCGAGTGGCTAAGGCACGAGGACTGCTCTTGGTCACCGACT GCACCAGCAGGTCCATGATCTCATCTGAAGTGTCACTGGGTAAAGTGGAGCCGGGAGGTT CTTCTGGGGGTACAGTGGAGGGCCCCACTGTGGTAGGCATGACTGGGGAGCTGTTCTGGA CATTGCCTCTGCTGCGGCGGCCGTGTGTGGCGTCCTCAGGCTTGCTGGCCAGCAGACTCT TCATGCTGGCGTGACTGTCGGCATCCCCTCTTCCTGGCCCACTGCTCACAGCCACTGGGA CAGATGGGTGGCTGGGAGTTTCCCCAGCCACACCTGAGAACTTCTCTGTCTCGGTGATCA TGCGTCCCCGGGTCTTGTTGCGCTCACGGTACGTGGCTCGCTTCTGCTGCTGCTGCAACA CCCGCTCCCGGCAAGTCCGATACTCCAGTGCAAACTCCCGCAGCGTGTGGCAGAACTGCA TGATGCGGACCTCACGGGCTGCCTCTGCCGTGTACCCCAGGTACAGCAGGAAGGCGTGGA ATCTGTTGCACACACGGCGGTGCACAACCCTCAGCATGGCAACACGGCGGGTACAGTGGG CCAGGAAGTGGGTGAGGCGGGCACGCAGGGCTGGAGCCAGCTCGTGCTTGGCCAGGCTCC TCAGGCTCTCCTCTGCTGCCCGGCTCCGGCGCTCCAGCTGCCCCAGGTTCTCAGTCAGCT GCTCAAAGTCCACCTTGGCACAGCGGGTCAGGGCAGGAATTTCTGAGTAGAGGTCAGAGG AATCGGGCCGGATCTGGAGCACCAGGGAGCAGAGATGATGCAGCAGTGACTGTCGGCGCA CCGTGTCCTTCACCTCTGACACCTTCTCCAGGTAGCTCAGCTCAAAGCCCCTGCTCTGGG AGCCATTGAGGAAGTTGCCCACAGCCAGAAGGGTGGCCAGGATGCAGCGGAAGGTGGCAT TTTGCACCAGCTGTTCCATGCCCACTTTCAGGTCAAACAGCGGCTCTGCGATTTCCCGCT CCATGCTGTCATAATCCAGCTTGAAGGCCCAGAGTTGTAGGCGGGCAGCCAGGCCTCCGA TGGAGGCGAGGGTCATCAGGAAGTTTTCGGCTGGGCCCAGGGGTATGTCAGGATTGGCTA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 1-285, gnl|bosTau2|chr18 (28750380-28750084) | |
| 1-285, gnl|Hg17|chr16 (65820807-65821122) | |
| 1-285, gnl|Mm7|chr8 (103927815-103928118) | |
| 843-1044, gnl|bosTau2|chr18 (28749462-28749262) | |
| 843-1044, gnl|canFam2|chr5 (85152241-85152041) | |
| 843-1044, gnl|danRer3|chrUn (78913044-78912843) | |
| 843-1044, gnl|dasNov1|scaffold_49840 (7560-7761) | |
| 843-1044, gnl|echTel1|scaffold_155122 (4831-4673) | |
| 843-1044, gnl|fr1|chrUn (105597250-105597049) | |
| 843-1044, gnl|galGal2|chr11 (1290569-1290406) | |
| 843-1044, gnl|hg17|chr16 (65822004-65822205) | |
| 843-1044, gnl|Hg17|chr16 (65822005-65822205) | |
| 843-1044, gnl|loxAfr1|scaffold_53484 (10770-10970) | |
| 843-1044, gnl|mm7|chr8 (103929025-103929225) | |
| 843-1044, gnl|Mm7|chr8 (103929026-103929225) | |
| 843-1044, gnl|monDom2|scaffold_23 (19667504-19667305) | |
| 843-1044, gnl|oryCun1|scaffold_200187 (56520-56720) | |
| 843-1044, gnl|panTro1|chr18 (60081655-60081856) | |
| 843-1044, gnl|rheMac2|chr20 (65531140-65531341) | |
| 843-1044, gnl|rn3|chr19 (35150361-35150561) | |
| 843-1044, gnl|tetNig1|chrUn_random (6325645-6325843) | |
| 843-1044, gnl|xenTro1|scaffold_387 (601185-601386) | |
| 1196-1316, gnl|bosTau2|chr18 (28748369-28748249) | |
| 1196-1316, gnl|canFam2|chr5 (85151417-85151281) | |
| 1196-1316, gnl|danRer3|chrUn (78910159-78910030) | |
| 1196-1316, gnl|dasNov1|scaffold_49840 (8363-8499) | |
| 1196-1316, gnl|echTel1|scaffold_155122 (4504-4420) | |
| 1196-1316, gnl|fr1|chrUn (105596286-105596150) | |
| 1196-1316, gnl|galGal2|chr11 (1290030-1289827) | |
| 1196-1316, gnl|hg17|chr16 (65822821-65822957) | |
| 1196-1316, gnl|Hg17|chr16 (65822834-65822954) | |
| 1196-1316, gnl|loxAfr1|scaffold_26781 (53889-53753) | |
| 1196-1316, gnl|mm7|chr8 (103929994-103930132) | |
| 1196-1316, gnl|Mm7|chr8 (103930009-103930129) | |
| 1196-1316, gnl|monDom2|scaffold_23 (19666974-19666838) | |
| 1196-1316, gnl|oryCun1|scaffold_200187 (57309-57450) | |
| 1196-1316, gnl|panTro1|chr18 (60082473-60082609) | |
| 1196-1316, gnl|rheMac2|chr20 (65531958-65532090) | |
| 1196-1316, gnl|rn3|chr19 (35151534-35151670) | |
| 1196-1316, gnl|tetNig1|chrUn_random (6326428-6326557) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-285, gnl|bosTau2|chr18 (28750380-28750084) | |
| 1-285, gnl|Hg17|chr16 (65820807-65821122) | |
| 1-285, gnl|Mm7|chr8 (103927815-103928118) | |
| 843-1044, gnl|bosTau2|chr18 (28749462-28749262) | |
| 843-1044, gnl|canFam2|chr5 (85152241-85152041) | |
| 843-1044, gnl|danRer3|chrUn (78913044-78912843) | |
| 843-1044, gnl|dasNov1|scaffold_49840 (7560-7761) | |
| 843-1044, gnl|echTel1|scaffold_155122 (4831-4673) | |
| 843-1044, gnl|fr1|chrUn (105597250-105597049) | |
| 843-1044, gnl|galGal2|chr11 (1290569-1290406) | |
| 843-1044, gnl|hg17|chr16 (65822004-65822205) | |
| 843-1044, gnl|Hg17|chr16 (65822005-65822205) | |
| 843-1044, gnl|loxAfr1|scaffold_53484 (10770-10970) | |
| 843-1044, gnl|mm7|chr8 (103929025-103929225) | |
| 843-1044, gnl|Mm7|chr8 (103929026-103929225) | |
| 843-1044, gnl|monDom2|scaffold_23 (19667504-19667305) | |
| 843-1044, gnl|oryCun1|scaffold_200187 (56520-56720) | |
| 843-1044, gnl|panTro1|chr18 (60081655-60081856) | |
| 843-1044, gnl|rheMac2|chr20 (65531140-65531341) | |
| 843-1044, gnl|rn3|chr19 (35150361-35150561) | |
| 843-1044, gnl|tetNig1|chrUn_random (6325645-6325843) | |
| 843-1044, gnl|xenTro1|scaffold_387 (601185-601386) | |
| 1196-1316, gnl|bosTau2|chr18 (28748369-28748249) | |
| 1196-1316, gnl|canFam2|chr5 (85151417-85151281) | |
| 1196-1316, gnl|danRer3|chrUn (78910159-78910030) | |
| 1196-1316, gnl|dasNov1|scaffold_49840 (8363-8499) | |
| 1196-1316, gnl|echTel1|scaffold_155122 (4504-4420) | |
| 1196-1316, gnl|fr1|chrUn (105596286-105596150) | |
| 1196-1316, gnl|galGal2|chr11 (1290030-1289827) | |
| 1196-1316, gnl|hg17|chr16 (65822821-65822957) | |
| 1196-1316, gnl|Hg17|chr16 (65822834-65822954) | |
| 1196-1316, gnl|loxAfr1|scaffold_26781 (53889-53753) | |
| 1196-1316, gnl|mm7|chr8 (103929994-103930132) | |
| 1196-1316, gnl|Mm7|chr8 (103930009-103930129) | |
| 1196-1316, gnl|monDom2|scaffold_23 (19666974-19666838) | |
| 1196-1316, gnl|oryCun1|scaffold_200187 (57309-57450) | |
| 1196-1316, gnl|panTro1|chr18 (60082473-60082609) | |
| 1196-1316, gnl|rheMac2|chr20 (65531958-65532090) | |
| 1196-1316, gnl|rn3|chr19 (35151534-35151670) | |
| 1196-1316, gnl|tetNig1|chrUn_random (6326428-6326557) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| eru (0.240096) | |
| col (0.195008) | |
| nlu (0.191681) | |
| ill (0.175593) | |
| duo (0.172801) | |
| cag (0.151194) | |
| ssp (0.13552) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eru (0.240096) | |
| col (0.195008) | |
| nlu (0.191681) | |
| ill (0.175593) | |
| duo (0.172801) | |
| cag (0.151194) | |
| ssp (0.13552) |