Non-Coding RNA Search

Ss1.1-Pig4-TMW8023G01.5

Sequence:


               
               CTCGCTGTTTCAGCGACAGGGTAAGGGAGTTAAGGAAGGAGTTGGGGTTCGGGGTGCGAA
GTCAGGGCGCAGCCAGGCAGAGGTACATCGGGGAGCCAGGTAATAATTTCAAGATGCCAG
GGCGTGCCAGTTCCAGTTCAGGTTCGACTGGTTTCATATCCTTCAGCGGCATAGAATCTG
CTCTGTCCTCCTTGAAAAACTTCCAGACCTGCATCAGCTCTGGAATGGACACAGCTTCTA
GTGTTGCTTTGGACCTTGTGGAAACTCAGACTGAAGTGAGTAGTGAGTACAGTATGGATA
AGGCGATGGTTGAATTTGCAATCATGGATCGGGAACTAAACCATTATTTAAAGGCTGTTC
AATCTACAATAAACCATGTAAAAGAAGAACGTCCAGAAAAAATACCCGATCTAAAATTAT
TAGTGGAGGAGAAGTTTTTGGCTTTACAGAATGAGAATTCCGAGGCAGACTTTCAAAATA
ATGAAAAATTTGTGCAGTTTAAACAACAGCTGAAAGAACTAAAGAAGCAATATGGTCTTC
AAGCAGACAGAGAAGCCGATGGCACGGAAGGAGTTGATGAAGATATGATTGTGACCCAAA
GCCAGACCAACTTCATCTGCCCCATTACACAGTTGGAAATGAAGAAGCCAGTGAAAAATA
AAGTGTGTGGCCACACCTATGAAGAGGAAGCCATTGTTCGCATGATTGAGTCCAAGCACA
AGCGGAAGAAAAAGGCCTGTTGCCCCAAAATTGGCTGTAGCCACACAGACGTGAGATTGT
CTGATCTCATCCAGGATGAGGCTCTGAGAAGGGCGATTGAGAGCCACCACAAGAAAAAAC
ATCGTCAGTCCGACTAGGAAAAGCCACCTGCCTGCAGGAAACTCCGCAGCCTACCTCCGA
CCCCAGACATCTGTAGAGGGCAATGCTTGTCAAAGCACTTTGACTGGCTGCATAGCATAC
TTTGGGGTAAAATTGAAGGTTTTCGTGTATTTGAAAACATTTTTCTATGTTCCAATAAAA
ATCCAAGCATATTATATTGTTTATTTTTAAGTGTTCTGTACTTTTAAATAAAACTTTGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCGCTGTTTCAGCGACAGGGTAAGGGAGTTAAGGAAGGAGTTGGGGTTCGGGGTGCGAA
GTCAGGGCGCAGCCAGGCAGAGGTACATCGGGGAGCCAGGTAATAATTTCAAGATGCCAG
GGCGTGCCAGTTCCAGTTCAGGTTCGACTGGTTTCATATCCTTCAGCGGCATAGAATCTG
CTCTGTCCTCCTTGAAAAACTTCCAGACCTGCATCAGCTCTGGAATGGACACAGCTTCTA
GTGTTGCTTTGGACCTTGTGGAAACTCAGACTGAAGTGAGTAGTGAGTACAGTATGGATA
AGGCGATGGTTGAATTTGCAATCATGGATCGGGAACTAAACCATTATTTAAAGGCTGTTC
AATCTACAATAAACCATGTAAAAGAAGAACGTCCAGAAAAAATACCCGATCTAAAATTAT
TAGTGGAGGAGAAGTTTTTGGCTTTACAGAATGAGAATTCCGAGGCAGACTTTCAAAATA
ATGAAAAATTTGTGCAGTTTAAACAACAGCTGAAAGAACTAAAGAAGCAATATGGTCTTC
AAGCAGACAGAGAAGCCGATGGCACGGAAGGAGTTGATGAAGATATGATTGTGACCCAAA
GCCAGACCAACTTCATCTGCCCCATTACACAGTTGGAAATGAAGAAGCCAGTGAAAAATA
AAGTGTGTGGCCACACCTATGAAGAGGAAGCCATTGTTCGCATGATTGAGTCCAAGCACA
AGCGGAAGAAAAAGGCCTGTTGCCCCAAAATTGGCTGTAGCCACACAGACGTGAGATTGT
CTGATCTCATCCAGGATGAGGCTCTGAGAAGGGCGATTGAGAGCCACCACAAGAAAAAAC
ATCGTCAGTCCGACTAGGAAAAGCCACCTGCCTGCAGGAAACTCCGCAGCCTACCTCCGA
CCCCAGACATCTGTAGAGGGCAATGCTTGTCAAAGCACTTTGACTGGCTGCATAGCATAC
TTTGGGGTAAAATTGAAGGTTTTCGTGTATTTGAAAACATTTTTCTATGTTCCAATAAAA
ATCCAAGCATATTATATTGTTTATTTTTAAGTGTTCTGTACTTTTAAATAAAACTTTGAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q91VT1_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q91VT1_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               650-849, - strand, RNAz p=0.899009

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               650-849, - strand, RNAz p=0.899009

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               15-1080, gnl|bosTau2|chr17 (29214285-29215322)
               

               
               15-1080, gnl|Mm7|chr14 (35145640-35146781)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               15-1080, gnl|bosTau2|chr17 (29214285-29215322)
               

               
               15-1080, gnl|Mm7|chr14 (35145640-35146781)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               sto (0.539471)
               

               
               rec (0.17307)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               che (0.136314)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sto (0.539471)
               

               
               rec (0.17307)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               che (0.136314)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)

	15-1080, gnl\|bosTau2\|chr17 (29214285-29215322)
	15-1080, gnl\|Mm7\|chr14 (35145640-35146781)

	sto (0.539471)
	rec (0.17307)
	spl (0.143184)
	lnt (0.142308)
	che (0.136314)
	bla (0.124347)
	eep (0.122564)
	pgl (0.118483)