Non-Coding RNA Search

Ss1.1-Pig4-TMW8023G04.5

Sequence:


               
               GGATGGAGCCGGAAGAAGGGACGCCCTTGTGGCGGCTCCAGAAGCTGCCTGCGGAGCTGG
GCCCGCAGCTTCTTCACAAAATAATTGATGGCTTTTGTGGTCGAACTTATCCACTCTACA
AGGATTATCAGAGTGTTTGGGATTCAACAGAATGGATGCATGTTCTAGAAGACATTACCG
AATTTTTCAAAGCTGTAGTTGGTAAAAATTTAACTGATGAAGAGATATCTCAGCAGTTGA
ATCAGTTGAATTCATCTCATCAAGAAGCGATCATGAAATGCTTAAAAAGTAGAAAAGATG
AAATCAAGCAGGCTCTGTTAGAAGAAATAGTTGGTATTTCCTCAGCACAGCTACAGGATT
TTGATTGGCAGTTAAAGCTTGCACTTTCAAGTGACAAGATTGCTACATTACAAATGCCAC
TTTTAAACCTTCATCTAGATGTGAAAGAAAATGGTGAAGTCAAACCTTATTCTGTTGAGA
TGAGTAAAGAAGAGCTGCAGAATTTAATAAATTCCTTAGAAGCAGCTAATAAGGTGGTTC
TGCAGTTGAAATAACTGGAAATGACGAATACCAGCATCATCACATTCCACTGCTACAAGT
GATGTGGCAGAATGAATATCATGTGTTCAGAAAACCTGCACTGTACTATTCTGGCAAGCT
GAGAAAGCAGCAGTGTTGAGGTTACAAAGACAATTTATCAGCTTCCCTAAAGAACAGAAA
ATTATATGGTTGACAAGAAATGCGTAAAAACATGAAAGATGAAAAGGCTTTAATAGTTTA
TATTTTCATAGTGACTGTTTTGCTTCAATTATTAAATATTTGAGAGCTCTTTATAGATAT
AGAGTTTTATTGAAAACTGAAAAAGGCTCTAAAGTAATGTAAACATACAAGCACAAATAT
ATTTGGATAATGCTTAACTGTGTGGATGGCAAGGATGTTTGTTATGGATATATATTGGTA
ATTTGTGATATTTAAAAAAAATAACTTTTAAAGAATGTATAAGCTGCATCTGTACTCAGG
AGATTCCATGTCTTTCGCAGTTCAAAGGAAAGGTTGGAAAATGTAAAATTTCTTAGAGAG
GCTCTTCAGATGTGAATAAGAAAAAAATCTGTGTGAAGAATTTTGAGATTTGAATTCTAG
AAACTAAACTCTTACATTAGAACATAGATAAAAATAACACTATTACTTCTCTATGTCTGT
GATCAGGAAAGTTTGCTCTGATAAAATGAATACATGTCATTGAATAGTGTATATATTGCT
GTTCAAATATCAGCTAAGACTCTATATAGGTCCATATTTGCAATAAACTCTTAGTTTGTT
ATAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGATGGAGCCGGAAGAAGGGACGCCCTTGTGGCGGCTCCAGAAGCTGCCTGCGGAGCTGG
GCCCGCAGCTTCTTCACAAAATAATTGATGGCTTTTGTGGTCGAACTTATCCACTCTACA
AGGATTATCAGAGTGTTTGGGATTCAACAGAATGGATGCATGTTCTAGAAGACATTACCG
AATTTTTCAAAGCTGTAGTTGGTAAAAATTTAACTGATGAAGAGATATCTCAGCAGTTGA
ATCAGTTGAATTCATCTCATCAAGAAGCGATCATGAAATGCTTAAAAAGTAGAAAAGATG
AAATCAAGCAGGCTCTGTTAGAAGAAATAGTTGGTATTTCCTCAGCACAGCTACAGGATT
TTGATTGGCAGTTAAAGCTTGCACTTTCAAGTGACAAGATTGCTACATTACAAATGCCAC
TTTTAAACCTTCATCTAGATGTGAAAGAAAATGGTGAAGTCAAACCTTATTCTGTTGAGA
TGAGTAAAGAAGAGCTGCAGAATTTAATAAATTCCTTAGAAGCAGCTAATAAGGTGGTTC
TGCAGTTGAAATAACTGGAAATGACGAATACCAGCATCATCACATTCCACTGCTACAAGT
GATGTGGCAGAATGAATATCATGTGTTCAGAAAACCTGCACTGTACTATTCTGGCAAGCT
GAGAAAGCAGCAGTGTTGAGGTTACAAAGACAATTTATCAGCTTCCCTAAAGAACAGAAA
ATTATATGGTTGACAAGAAATGCGTAAAAACATGAAAGATGAAAAGGCTTTAATAGTTTA
TATTTTCATAGTGACTGTTTTGCTTCAATTATTAAATATTTGAGAGCTCTTTATAGATAT
AGAGTTTTATTGAAAACTGAAAAAGGCTCTAAAGTAATGTAAACATACAAGCACAAATAT
ATTTGGATAATGCTTAACTGTGTGGATGGCAAGGATGTTTGTTATGGATATATATTGGTA
ATTTGTGATATTTAAAAAAAATAACTTTTAAAGAATGTATAAGCTGCATCTGTACTCAGG
AGATTCCATGTCTTTCGCAGTTCAAAGGAAAGGTTGGAAAATGTAAAATTTCTTAGAGAG
GCTCTTCAGATGTGAATAAGAAAAAAATCTGTGTGAAGAATTTTGAGATTTGAATTCTAG
AAACTAAACTCTTACATTAGAACATAGATAAAAATAACACTATTACTTCTCTATGTCTGT
GATCAGGAAAGTTTGCTCTGATAAAATGAATACATGTCATTGAATAGTGTATATATTGCT
GTTCAAATATCAGCTAAGACTCTATATAGGTCCATATTTGCAATAAACTCTTAGTTTGTT
ATAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|57095536|ref|XP_532368.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57095536|ref|XP_532368.1|

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               67-230, gnl|bosTau2|chr6 (35859925-35860088)
               

               
               67-230, gnl|Hg17|chr4 (47303246-47303083)
               

               
               67-230, gnl|Mm7|chr5 (71535949-71535786)
               


               
               531-1325, gnl|bosTau2|chr6 (35868989-35869807)
               

               
               531-1325, gnl|Hg17|chr4 (47294613-47293830)
               

               
               531-1325, gnl|Mm7|chr5 (71530337-71529554)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               67-230, gnl|bosTau2|chr6 (35859925-35860088)
               

               
               67-230, gnl|Hg17|chr4 (47303246-47303083)
               

               
               67-230, gnl|Mm7|chr5 (71535949-71535786)
               


               
               531-1325, gnl|bosTau2|chr6 (35868989-35869807)
               

               
               531-1325, gnl|Hg17|chr4 (47294613-47293830)
               

               
               531-1325, gnl|Mm7|chr5 (71530337-71529554)

Expressed library(ies): 28 entry(ies)

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Expressed library(ies): 28 entry(ies)

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               fco (0.78604)
               

               
               mgp (0.692042)
               

               
               ret (0.514933)
               

               
               pro (0.512033)
               

               
               cje (0.330469)
               

               
               clu (0.239292)
               

               
               cbl (0.229595)
               

               
               spc (0.226732)
               

               
               cty (0.20816)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               gul (0.177588)
               

               
               rec (0.17307)
               

               
               cki (0.165235)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               jej (0.0989218)

Expressed library(ies): 28 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.78604)
               

               
               mgp (0.692042)
               

               
               ret (0.514933)
               

               
               pro (0.512033)
               

               
               cje (0.330469)
               

               
               clu (0.239292)
               

               
               cbl (0.229595)
               

               
               spc (0.226732)
               

               
               cty (0.20816)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               gul (0.177588)
               

               
               rec (0.17307)
               

               
               cki (0.165235)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               jej (0.0989218)

	67-230, gnl\|bosTau2\|chr6 (35859925-35860088)
	67-230, gnl\|Hg17\|chr4 (47303246-47303083)
	67-230, gnl\|Mm7\|chr5 (71535949-71535786)

	531-1325, gnl\|bosTau2\|chr6 (35868989-35869807)
	531-1325, gnl\|Hg17\|chr4 (47294613-47293830)
	531-1325, gnl\|Mm7\|chr5 (71530337-71529554)

	fco (0.78604)
	mgp (0.692042)
	ret (0.514933)
	pro (0.512033)
	cje (0.330469)
	clu (0.239292)
	cbl (0.229595)
	spc (0.226732)
	cty (0.20816)
	fcc (0.197785)
	nlu (0.191681)
	nep (0.183925)
	gul (0.177588)
	rec (0.17307)
	cki (0.165235)
	tbr (0.154178)
	bfe (0.149858)
	ski (0.146735)
	lin (0.145603)
	spl (0.143184)
	lyg (0.133103)
	kid (0.129735)
	sug (0.127291)
	thg (0.126791)
	bla (0.124347)
	tra (0.123092)
	eru (0.120048)
	jej (0.0989218)