Ss1.1-Pig4-TMW8023G05.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCTGGGATTGTCCTCCATGGCTACGCACGGTGGCAGGACATCCAGAACGATGCTCAGTT TGCCATTATCAACGAGCCATTTAAAACTGAAGCTAATAAGGGGAACTTTCTGGAGATGAA AAATAAGTTCCTGGCCCGGAGATTCAAGCTCCTGGAGCAGGCGCTGGTGATCGAGGAGCA GCTGCGGCGGGCGGCCTACCTGAACCTATCACAGGAGCCGGCGCACCCCGCCATGGCCCT CCACGCCCGCTTCGCCGAGGCCGAGTGCCTGGCCGAGAGCCACCAGCACCTCTCCAAGGA GTCGTTGGCGGGGAACAAGCCGGCCAACGCCGTCCTGCACAAGGTTCTGAACCAGCTGGA GGAGTTGCTGAGCGACATGAAGGCGGACGTGACCCGCCTGCCAGCCACGCTGTCCCGAAT ACCCCCCATCGCAGCCCGCCTTCAGATGTCCGAGCGCAGCATCCTCAGCCGGCTGGCCAG CAAGGGCACGGAGCCTCGCCCCACACCGGCCTTCCCCCCGGGTCCCTACGCCACACCTCC GGGGTACGGGGCGGCCTTCAGCGCCGCACCCGTAGGGGCCCTGGCCGCCGCAGGCGCCAA TTACAGCCAGATGCCTGCAGGGTCCTTCATCACAGCCGCCACCAACGGCCCTCCAGTGCT GGTGAAGAAGGAGAAGGAAATGATGGGGGCGTTGGTGTCAGACGGGCTGGATCGGAAGGA GCCCCGAGCCGGGGAGGTGATCTGTATAGACGACTGACCGGATCCCAGACCTGCCCTTCA CCCAGGCCTCGTTCCCGAGGCCGACCCCCAGCTCAGGCTCTGGGGCCTGCTGCCAGTCCT CCGCCTTCCCCACCCCTTGGGCCACCACTGGGCTAGGAGCCCGTTTGCCCCTCTCTCCCA CTCTTTTCAGGAAGGGCCCTTTGTCTTTTCTACCCCACGCACCTTTCCCACCGCGCTTTG GAGACTGCTGGTGAGAAGAGGTCTGGGTGGGAGCTGGTGAGCAGGGTCCTCCAAGTACCT TTACCCCCACCGCCAAGCATACACAGCTTCCCGATCAGTGGTTGTGGGGAGGAAAGAGGT GGAGCCTCCCCAGTTTTTATTCCCAAAATATAAGCTCCACCTCCTGCAGAAGTGGGGAGT TAGCCTTGCCTGGCCTTTAGGAACTTCGGTGGGGAAAAGAGAGCCTTGAAGAGAGGAGGG GACTTTAGAGAGGGATGACAGTGAGCCCTGGGAGGGCGGAAGGGAAGAGGAGGGGCGGCT GCATGTTTCCCTCCCTCCCTCCCCGCAGATGGAGAGTGGAGCAGTTACAAGGGAGGGAGT CCGTTGCTGTTCAGCCTCAGAATAAAGGCGCTGTTCACTGGCTCAGTCACCTCCTGCGTA CTGGCATCTTGTGTTGGGAATCTTACCCCATCCCTAGGGACCAAGGACTGCCCCTACAAA GAGACTAATAATTTGGGTGAACACTCCCTTAAGCCAAAGAGGAGCTCCCCAATCTGTCCT AGGGACCCACGTAATCTAGAAAGGGTGGCAGAGAACGCAATGGGCCAGACGTCGGGGGAG CCCCCAGCTTTGGGGCTCAGGTTCTTGGAGGACTTTTACCCTCCCTCCTGCAGACCTGGA TACGGACTAAACTTGAGTGGGTCAGCCAGGGGGCCTAGTCAGGGGACTACCTTGCCTTTG GGACCAGAGCAAAATAGTGGAGGGCAGGCTGGGGAGACATGGGCACATCCTCCTCCCCGA GAGGGGCTGGGACAGTGGCAGTTTGCATGGCGAACCCCCCACTTCGTCTTCGCTCCCCTT CACTTTCTTGCTGCCCCTTTCCCAGTCTCTTCACACCCCCTCCTGGTCTGTCCCAGTCCC CTCTTCTGTATCAGGTTTATGGTTGTACATATAAATTATACTTTCCTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCTGGGATTGTCCTCCATGGCTACGCACGGTGGCAGGACATCCAGAACGATGCTCAGTT TGCCATTATCAACGAGCCATTTAAAACTGAAGCTAATAAGGGGAACTTTCTGGAGATGAA AAATAAGTTCCTGGCCCGGAGATTCAAGCTCCTGGAGCAGGCGCTGGTGATCGAGGAGCA GCTGCGGCGGGCGGCCTACCTGAACCTATCACAGGAGCCGGCGCACCCCGCCATGGCCCT CCACGCCCGCTTCGCCGAGGCCGAGTGCCTGGCCGAGAGCCACCAGCACCTCTCCAAGGA GTCGTTGGCGGGGAACAAGCCGGCCAACGCCGTCCTGCACAAGGTTCTGAACCAGCTGGA GGAGTTGCTGAGCGACATGAAGGCGGACGTGACCCGCCTGCCAGCCACGCTGTCCCGAAT ACCCCCCATCGCAGCCCGCCTTCAGATGTCCGAGCGCAGCATCCTCAGCCGGCTGGCCAG CAAGGGCACGGAGCCTCGCCCCACACCGGCCTTCCCCCCGGGTCCCTACGCCACACCTCC GGGGTACGGGGCGGCCTTCAGCGCCGCACCCGTAGGGGCCCTGGCCGCCGCAGGCGCCAA TTACAGCCAGATGCCTGCAGGGTCCTTCATCACAGCCGCCACCAACGGCCCTCCAGTGCT GGTGAAGAAGGAGAAGGAAATGATGGGGGCGTTGGTGTCAGACGGGCTGGATCGGAAGGA GCCCCGAGCCGGGGAGGTGATCTGTATAGACGACTGACCGGATCCCAGACCTGCCCTTCA CCCAGGCCTCGTTCCCGAGGCCGACCCCCAGCTCAGGCTCTGGGGCCTGCTGCCAGTCCT CCGCCTTCCCCACCCCTTGGGCCACCACTGGGCTAGGAGCCCGTTTGCCCCTCTCTCCCA CTCTTTTCAGGAAGGGCCCTTTGTCTTTTCTACCCCACGCACCTTTCCCACCGCGCTTTG GAGACTGCTGGTGAGAAGAGGTCTGGGTGGGAGCTGGTGAGCAGGGTCCTCCAAGTACCT TTACCCCCACCGCCAAGCATACACAGCTTCCCGATCAGTGGTTGTGGGGAGGAAAGAGGT GGAGCCTCCCCAGTTTTTATTCCCAAAATATAAGCTCCACCTCCTGCAGAAGTGGGGAGT TAGCCTTGCCTGGCCTTTAGGAACTTCGGTGGGGAAAAGAGAGCCTTGAAGAGAGGAGGG GACTTTAGAGAGGGATGACAGTGAGCCCTGGGAGGGCGGAAGGGAAGAGGAGGGGCGGCT GCATGTTTCCCTCCCTCCCTCCCCGCAGATGGAGAGTGGAGCAGTTACAAGGGAGGGAGT CCGTTGCTGTTCAGCCTCAGAATAAAGGCGCTGTTCACTGGCTCAGTCACCTCCTGCGTA CTGGCATCTTGTGTTGGGAATCTTACCCCATCCCTAGGGACCAAGGACTGCCCCTACAAA GAGACTAATAATTTGGGTGAACACTCCCTTAAGCCAAAGAGGAGCTCCCCAATCTGTCCT AGGGACCCACGTAATCTAGAAAGGGTGGCAGAGAACGCAATGGGCCAGACGTCGGGGGAG CCCCCAGCTTTGGGGCTCAGGTTCTTGGAGGACTTTTACCCTCCCTCCTGCAGACCTGGA TACGGACTAAACTTGAGTGGGTCAGCCAGGGGGCCTAGTCAGGGGACTACCTTGCCTTTG GGACCAGAGCAAAATAGTGGAGGGCAGGCTGGGGAGACATGGGCACATCCTCCTCCCCGA GAGGGGCTGGGACAGTGGCAGTTTGCATGGCGAACCCCCCACTTCGTCTTCGCTCCCCTT CACTTTCTTGCTGCCCCTTTCCCAGTCTCTTCACACCCCCTCCTGGTCTGTCCCAGTCCC CTCTTCTGTATCAGGTTTATGGTTGTACATATAAATTATACTTTCCTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 632-1134, - strand, RNAz p=0.990732 | |
| 1175-1332, - strand, RNAz p=0.991976 | |
| 1413-1609, - strand, RNAz p=0.980476 | |
| 1723-1838, + strand, RNAz p=0.999222 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 632-1134, - strand, RNAz p=0.990732 | |
| 1175-1332, - strand, RNAz p=0.991976 | |
| 1413-1609, - strand, RNAz p=0.980476 | |
| 1723-1838, + strand, RNAz p=0.999222 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 147-344, gnl|bosTau2|chr16 (35025413-35025610) | |
| 147-344, gnl|canFam2|chr5 (63027897-63028056) | |
| 147-344, gnl|danRer3|chr11 (14567941-14567786) | |
| 147-344, gnl|dasNov1|scaffold_4087 (133873-134031) | |
| 147-344, gnl|echTel1|scaffold_322851 (6582-6423) | |
| 147-344, gnl|fr1|chrUn (283169132-283169287) | |
| 147-344, gnl|galGal2|chr21 (578481-578309) | |
| 147-344, gnl|hg17|chr1 (6104114-6104273) | |
| 147-344, gnl|Hg17|chr1 (6104318-6104121) | |
| 147-344, gnl|loxAfr1|scaffold_119765 (3515-3672) | |
| 147-344, gnl|mm7|chr4 (151374231-151374072) | |
| 147-344, gnl|Mm7|chr4 (151374025-151374222) | |
| 147-344, gnl|monDom2|scaffold_78 (2451369-2451213) | |
| 147-344, gnl|oryCun1|scaffold_184115 (7397-7556) | |
| 147-344, gnl|panTro1|chr1 (6031337-6031496) | |
| 147-344, gnl|rheMac2|chr1 (9110079-9110238) | |
| 147-344, gnl|rn3|chr5 (169625679-169625520) | |
| 147-344, gnl|tetNig1|chr20 (664802-664954) | |
| 147-344, gnl|xenTro1|scaffold_46 (495321-495474) | |
| 632-1908, gnl|bosTau2|chr19 (15298308-15297037) | |
| 632-1908, gnl|Hg17|chr17 (7755503-7756796) | |
| 632-1908, gnl|Mm7|chr11 (69426056-69424849) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 147-344, gnl|bosTau2|chr16 (35025413-35025610) | |
| 147-344, gnl|canFam2|chr5 (63027897-63028056) | |
| 147-344, gnl|danRer3|chr11 (14567941-14567786) | |
| 147-344, gnl|dasNov1|scaffold_4087 (133873-134031) | |
| 147-344, gnl|echTel1|scaffold_322851 (6582-6423) | |
| 147-344, gnl|fr1|chrUn (283169132-283169287) | |
| 147-344, gnl|galGal2|chr21 (578481-578309) | |
| 147-344, gnl|hg17|chr1 (6104114-6104273) | |
| 147-344, gnl|Hg17|chr1 (6104318-6104121) | |
| 147-344, gnl|loxAfr1|scaffold_119765 (3515-3672) | |
| 147-344, gnl|mm7|chr4 (151374231-151374072) | |
| 147-344, gnl|Mm7|chr4 (151374025-151374222) | |
| 147-344, gnl|monDom2|scaffold_78 (2451369-2451213) | |
| 147-344, gnl|oryCun1|scaffold_184115 (7397-7556) | |
| 147-344, gnl|panTro1|chr1 (6031337-6031496) | |
| 147-344, gnl|rheMac2|chr1 (9110079-9110238) | |
| 147-344, gnl|rn3|chr5 (169625679-169625520) | |
| 147-344, gnl|tetNig1|chr20 (664802-664954) | |
| 147-344, gnl|xenTro1|scaffold_46 (495321-495474) | |
| 632-1908, gnl|bosTau2|chr19 (15298308-15297037) | |
| 632-1908, gnl|Hg17|chr17 (7755503-7756796) | |
| 632-1908, gnl|Mm7|chr11 (69426056-69424849) |
| Expressed library(ies): 16 entry(ies) | More info |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
| nms (0.427716) | |
| ebs (0.354904) | |
| ecc (0.345105) | |
| fce (0.271592) | |
| med (0.232504) | |
| fcc (0.197785) | |
| eje (0.197668) | |
| nep (0.183925) | |
| ton (0.1755) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| csp (0.161186) | |
| cag (0.151194) | |
| ute (0.132784) | |
| eru (0.120048) | |
| cty (0.10408) |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nms (0.427716) | |
| ebs (0.354904) | |
| ecc (0.345105) | |
| fce (0.271592) | |
| med (0.232504) | |
| fcc (0.197785) | |
| eje (0.197668) | |
| nep (0.183925) | |
| ton (0.1755) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| csp (0.161186) | |
| cag (0.151194) | |
| ute (0.132784) | |
| eru (0.120048) | |
| cty (0.10408) |