Non-Coding RNA Search

Ss1.1-Pig4-TMW8023G12.3

Sequence:


               
               TATTGATTTCTCACACAGCTAAGGAGGATTTTGTTTTGTCTGTATTGACTATCTGCTGCA
CAGAATATACGTAGGAAATACTCAGTGATATATGTCATCAGGTGATGACTTGAAGAGCTG
CTGAAGAAATTATTATTGTGTATTTAGATGCTTTAATGTTTGCAAAATCTGTCTTGTGAG
TGGACTGTCAGCTGTTAAAACTGTTCCTGTTTTAAGTGCTAATTCCTTTCTCAGTTACCA
GAATCTTGCCGCTAAAGTTGCAAGTGATTGACAATGGATTTTTAACAAATAAGTCCTTGT
TTTTGAAAAAAAAAAAAATCAAAAGCAGTAACTATTTTATATGGAAATGTGTCTTGAAAA
TATTACCTATTATGTGTGTATTTATCAGTACCTCGTATCAATCAATTACAGAGCACAATG
ATTGTCATTGGATATATACGTATTTATTCTCTCCTATTGGGCATAGAGGTGGTTTCTGCT
CCAAAACTCTATCCACTGTATTTCTACATGGTGAGTCATTTTACTTTCAAAGAGAAAAAC
AAATTTGTAGCAACTACAGTGTATTACAAATTTTAAACACTTGTCTCTCTTTTACTAAGA
AATCATTTTTGAATATACCATCTACCTGGAATCTCTCTCCCAGTAAAAGGCAGATGCCTT
TGGGAATGATGGAGCCTGTCCCATTTCCAGAGGTTCTTCAAAAGGATGCTGCCATGGATA
TCCTTAAATTTCTGAAAGGATTTCATCCTCAAGAGACAAATGAAGTCTAAAACAAACAAA
CTAACAAAAAAAAACAAAACCTACACTCGGCAAACACTAGATGTTCTGCTCAGATATGAA
TTTTTAATGCAGCTATGTTGACTTTGTTTCCTACTGCCAATAAACTACTCTTAATACTAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATTGATTTCTCACACAGCTAAGGAGGATTTTGTTTTGTCTGTATTGACTATCTGCTGCA
CAGAATATACGTAGGAAATACTCAGTGATATATGTCATCAGGTGATGACTTGAAGAGCTG
CTGAAGAAATTATTATTGTGTATTTAGATGCTTTAATGTTTGCAAAATCTGTCTTGTGAG
TGGACTGTCAGCTGTTAAAACTGTTCCTGTTTTAAGTGCTAATTCCTTTCTCAGTTACCA
GAATCTTGCCGCTAAAGTTGCAAGTGATTGACAATGGATTTTTAACAAATAAGTCCTTGT
TTTTGAAAAAAAAAAAAATCAAAAGCAGTAACTATTTTATATGGAAATGTGTCTTGAAAA
TATTACCTATTATGTGTGTATTTATCAGTACCTCGTATCAATCAATTACAGAGCACAATG
ATTGTCATTGGATATATACGTATTTATTCTCTCCTATTGGGCATAGAGGTGGTTTCTGCT
CCAAAACTCTATCCACTGTATTTCTACATGGTGAGTCATTTTACTTTCAAAGAGAAAAAC
AAATTTGTAGCAACTACAGTGTATTACAAATTTTAAACACTTGTCTCTCTTTTACTAAGA
AATCATTTTTGAATATACCATCTACCTGGAATCTCTCTCCCAGTAAAAGGCAGATGCCTT
TGGGAATGATGGAGCCTGTCCCATTTCCAGAGGTTCTTCAAAAGGATGCTGCCATGGATA
TCCTTAAATTTCTGAAAGGATTTCATCCTCAAGAGACAAATGAAGTCTAAAACAAACAAA
CTAACAAAAAAAAACAAAACCTACACTCGGCAAACACTAGATGTTCTGCTCAGATATGAA
TTTTTAATGCAGCTATGTTGACTTTGTTTCCTACTGCCAATAAACTACTCTTAATACTAA
AAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               645-763, - strand, RNAz p=0.635339

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               645-763, - strand, RNAz p=0.635339

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               5-788, gnl|bosTau2|chr5 (28631822-28631056)
               

               
               5-788, gnl|Hg17|chr12 (69318991-69318210)
               

               
               5-788, gnl|Mm7|chr10 (115781943-115782730)
               


               
               791-899, gnl|bosTau2|chr5 (28631079-28630971)
               

               
               791-899, gnl|canFam2|chr10 (15373884-15374580)
               

               
               791-899, gnl|dasNov1|scaffold_783 (99734-99042)
               

               
               791-899, gnl|echTel1|scaffold_323816 (134900-135602)
               

               
               791-899, gnl|galGal2|chr1 (32814783-32815515)
               

               
               791-899, gnl|hg17|chr12 (69317596-69318287)
               

               
               791-899, gnl|Hg17|chr12 (69318232-69318128)
               

               
               791-899, gnl|loxAfr1|scaffold_11420 (2150-1450)
               

               
               791-899, gnl|mm7|chr10 (115783308-115782655)
               

               
               791-899, gnl|Mm7|chr10 (115782708-115782815)
               

               
               791-899, gnl|monDom2|scaffold_36 (1714857-1715593)
               

               
               791-899, gnl|oryCun1|scaffold_208286 (151549-152237)
               

               
               791-899, gnl|panTro1|chr10 (70982484-70983178)
               

               
               791-899, gnl|rheMac2|chr11 (67590170-67590870)
               

               
               791-899, gnl|rn3|chr7 (55634191-55633513)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-788, gnl|bosTau2|chr5 (28631822-28631056)
               

               
               5-788, gnl|Hg17|chr12 (69318991-69318210)
               

               
               5-788, gnl|Mm7|chr10 (115781943-115782730)
               


               
               791-899, gnl|bosTau2|chr5 (28631079-28630971)
               

               
               791-899, gnl|canFam2|chr10 (15373884-15374580)
               

               
               791-899, gnl|dasNov1|scaffold_783 (99734-99042)
               

               
               791-899, gnl|echTel1|scaffold_323816 (134900-135602)
               

               
               791-899, gnl|galGal2|chr1 (32814783-32815515)
               

               
               791-899, gnl|hg17|chr12 (69317596-69318287)
               

               
               791-899, gnl|Hg17|chr12 (69318232-69318128)
               

               
               791-899, gnl|loxAfr1|scaffold_11420 (2150-1450)
               

               
               791-899, gnl|mm7|chr10 (115783308-115782655)
               

               
               791-899, gnl|Mm7|chr10 (115782708-115782815)
               

               
               791-899, gnl|monDom2|scaffold_36 (1714857-1715593)
               

               
               791-899, gnl|oryCun1|scaffold_208286 (151549-152237)
               

               
               791-899, gnl|panTro1|chr10 (70982484-70983178)
               

               
               791-899, gnl|rheMac2|chr11 (67590170-67590870)
               

               
               791-899, gnl|rn3|chr7 (55634191-55633513)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

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               fcc (0.39557)
               

               
               sto (0.179824)
               

               
               rec (0.17307)
               

               
               liv (0.146284)
               

               
               spc (0.113366)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.39557)
               

               
               sto (0.179824)
               

               
               rec (0.17307)
               

               
               liv (0.146284)
               

               
               spc (0.113366)

	5-788, gnl\|bosTau2\|chr5 (28631822-28631056)
	5-788, gnl\|Hg17\|chr12 (69318991-69318210)
	5-788, gnl\|Mm7\|chr10 (115781943-115782730)

	791-899, gnl\|bosTau2\|chr5 (28631079-28630971)
	791-899, gnl\|canFam2\|chr10 (15373884-15374580)
	791-899, gnl\|dasNov1\|scaffold_783 (99734-99042)
	791-899, gnl\|echTel1\|scaffold_323816 (134900-135602)
	791-899, gnl\|galGal2\|chr1 (32814783-32815515)
	791-899, gnl\|hg17\|chr12 (69317596-69318287)
	791-899, gnl\|Hg17\|chr12 (69318232-69318128)
	791-899, gnl\|loxAfr1\|scaffold_11420 (2150-1450)
	791-899, gnl\|mm7\|chr10 (115783308-115782655)
	791-899, gnl\|Mm7\|chr10 (115782708-115782815)
	791-899, gnl\|monDom2\|scaffold_36 (1714857-1715593)
	791-899, gnl\|oryCun1\|scaffold_208286 (151549-152237)
	791-899, gnl\|panTro1\|chr10 (70982484-70983178)
	791-899, gnl\|rheMac2\|chr11 (67590170-67590870)
	791-899, gnl\|rn3\|chr7 (55634191-55633513)

	fcc (0.39557)
	sto (0.179824)
	rec (0.17307)
	liv (0.146284)
	spc (0.113366)