Non-Coding RNA Search

Ss1.1-Pig4-TMW8023G16.5

Sequence:


               
               GGCGGCCTGTCGTCCGAGCCGAGCGCCTGCGCCGAGCGGGGACGCGGCAGAGCGCAGCCC
GAGCGCGGCGGGAGCCGAGCGGAGCGGATCGGAGCCCCAGCGCGCGGCGGAGACGCTGAC
CCCGCCCGGCCCCGCGCCGCCCCGGCAGGCCAGGCATGGAGCAGGAGTGCCGGGTGCTCT
CCATCCAGAGCCACGTCGTCCGCGGCTACGTGGGCAACCGAGCGGCAACGTTCCCGCTGC
AGGTTCTGGGGTTCGAGGTCGATGCAGTGAATTCTGTCCAGTTTTCAAACCACACAGGCT
ACGCGCACTGGAAGGGCCAGGTGCTGAACTCGGACGAGCTGCACGCGCTGTACGAGGGGC
TGAAGCTGAACAACGTGAACAAGTATGACTACGTGCTCACGGGTTACACGAGAGACAAGT
CCTTCCTGGCCATGGTGGTGGACATCGTGCGGGAGCTGAAGCAGCAGAACCCGAGGCTGG
TGTACGTGTGCGACCCGGTGATGGGAGACAAGTGGGATGGAGAAGGCTCCATGTACGTCC
CCGAGGACCTCCTTCCAGTTTACAGAGAGAAGGTCGTGCCCGTGGCAGACATCATAACCC
CCAACCAGTTTGAGGCGGAGTTGCTGACCGGCAGGAGGATCCACAGTGAGGAAGAAGCCT
TGGCGGTGATGGACATGCTGCACGCAATGGGCCCGGACACGGTGGTCATCACGAGCTCGG
ACCTCCCGTCCCCGAGGGGCAAAGACTACCTGATCGCGCTGGGGAGCCAGAGGACGCGAT
CCCCCGACGGCTCCGTGGCGACGCAGCGTATCCGCATGGAGATATGCAAGGTGGACGCGG
TCTTCGTGGGCACTGGGGACCTCTTTGCCGCCATGCTGCTGGCGTGGACACACAAGCACC
CCAACAACCTCAAGGTGGCCTGTGAGAAGACGGTGTCGGCCATGCACCACGTCCTGCGGC
GGACCATCCAGTGCGCCAAAGCCAAGGCTGGAGAAGGCCTGAAGCCCAGCCCGGCCCAGC
TGGAGCTGAGAATGGTCCAGAGCAAGAGGGACATTGAGGACCCGGAGGTGGTCGTCCAGG
CCACGGTGCTGTGAGGGCCGCCGAGCCCGCCTCCCAACGCCCAGTGCCCGCTGTCTGTTT
CCGTCCTTGTGAAAAATGTAACATCTGCCTTAGAGCTGTGACCGAAACTTGATATTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCGGCCTGTCGTCCGAGCCGAGCGCCTGCGCCGAGCGGGGACGCGGCAGAGCGCAGCCC
GAGCGCGGCGGGAGCCGAGCGGAGCGGATCGGAGCCCCAGCGCGCGGCGGAGACGCTGAC
CCCGCCCGGCCCCGCGCCGCCCCGGCAGGCCAGGCATGGAGCAGGAGTGCCGGGTGCTCT
CCATCCAGAGCCACGTCGTCCGCGGCTACGTGGGCAACCGAGCGGCAACGTTCCCGCTGC
AGGTTCTGGGGTTCGAGGTCGATGCAGTGAATTCTGTCCAGTTTTCAAACCACACAGGCT
ACGCGCACTGGAAGGGCCAGGTGCTGAACTCGGACGAGCTGCACGCGCTGTACGAGGGGC
TGAAGCTGAACAACGTGAACAAGTATGACTACGTGCTCACGGGTTACACGAGAGACAAGT
CCTTCCTGGCCATGGTGGTGGACATCGTGCGGGAGCTGAAGCAGCAGAACCCGAGGCTGG
TGTACGTGTGCGACCCGGTGATGGGAGACAAGTGGGATGGAGAAGGCTCCATGTACGTCC
CCGAGGACCTCCTTCCAGTTTACAGAGAGAAGGTCGTGCCCGTGGCAGACATCATAACCC
CCAACCAGTTTGAGGCGGAGTTGCTGACCGGCAGGAGGATCCACAGTGAGGAAGAAGCCT
TGGCGGTGATGGACATGCTGCACGCAATGGGCCCGGACACGGTGGTCATCACGAGCTCGG
ACCTCCCGTCCCCGAGGGGCAAAGACTACCTGATCGCGCTGGGGAGCCAGAGGACGCGAT
CCCCCGACGGCTCCGTGGCGACGCAGCGTATCCGCATGGAGATATGCAAGGTGGACGCGG
TCTTCGTGGGCACTGGGGACCTCTTTGCCGCCATGCTGCTGGCGTGGACACACAAGCACC
CCAACAACCTCAAGGTGGCCTGTGAGAAGACGGTGTCGGCCATGCACCACGTCCTGCGGC
GGACCATCCAGTGCGCCAAAGCCAAGGCTGGAGAAGGCCTGAAGCCCAGCCCGGCCCAGC
TGGAGCTGAGAATGGTCCAGAGCAAGAGGGACATTGAGGACCCGGAGGTGGTCGTCCAGG
CCACGGTGCTGTGAGGGCCGCCGAGCCCGCCTCCCAACGCCCAGTGCCCGCTGTCTGTTT
CCGTCCTTGTGAAAAATGTAACATCTGCCTTAGAGCTGTGACCGAAACTTGATATTTTTT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|47522712|ref|NP_999108.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47522712|ref|NP_999108.1|

Aligned organism(s): 7 entry(ies)

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Aligned organism(s): 7 entry(ies)

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               5-616, gnl|bosTau2|chr13 (32727717-32728319)
               


               
               783-916, gnl|bosTau2|chr1 (94365270-94365137)
               

               
               783-916, gnl|Hg17|chr21 (43997897-43998030)
               

               
               783-916, gnl|Mm7|chr10 (78098516-78098383)
               


               
               980-1200, gnl|bosTau2|chr1 (94363761-94363542)
               

               
               980-1200, gnl|Hg17|chr21 (44000258-44000480)
               

               
               980-1200, gnl|Mm7|chr10 (78095519-78095296)

Aligned organism(s): 7 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-616, gnl|bosTau2|chr13 (32727717-32728319)
               


               
               783-916, gnl|bosTau2|chr1 (94365270-94365137)
               

               
               783-916, gnl|Hg17|chr21 (43997897-43998030)
               

               
               783-916, gnl|Mm7|chr10 (78098516-78098383)
               


               
               980-1200, gnl|bosTau2|chr1 (94363761-94363542)
               

               
               980-1200, gnl|Hg17|chr21 (44000258-44000480)
               

               
               980-1200, gnl|Mm7|chr10 (78095519-78095296)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               cga (0.558191)
               

               
               duo (0.518403)
               

               
               ill (0.351185)
               

               
               cov (0.264306)
               

               
               mas (0.210305)
               

               
               eje (0.197668)
               

               
               eli (0.151814)
               

               
               cag (0.151194)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               cbl (0.114797)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cga (0.558191)
               

               
               duo (0.518403)
               

               
               ill (0.351185)
               

               
               cov (0.264306)
               

               
               mas (0.210305)
               

               
               eje (0.197668)
               

               
               eli (0.151814)
               

               
               cag (0.151194)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               cbl (0.114797)

	5-616, gnl\|bosTau2\|chr13 (32727717-32728319)

	783-916, gnl\|bosTau2\|chr1 (94365270-94365137)
	783-916, gnl\|Hg17\|chr21 (43997897-43998030)
	783-916, gnl\|Mm7\|chr10 (78098516-78098383)

	980-1200, gnl\|bosTau2\|chr1 (94363761-94363542)
	980-1200, gnl\|Hg17\|chr21 (44000258-44000480)
	980-1200, gnl\|Mm7\|chr10 (78095519-78095296)

	cga (0.558191)
	duo (0.518403)
	ill (0.351185)
	cov (0.264306)
	mas (0.210305)
	eje (0.197668)
	eli (0.151814)
	cag (0.151194)
	pla (0.133672)
	nmm (0.132802)
	ese (0.126502)
	eep (0.122564)
	cbl (0.114797)