Non-Coding RNA Search

Ss1.1-Pig4-TMW8023G17.3

Sequence:


               
               TCAGTGTAAGTCTATTACACTGGACCGGGGACCAGATGGCTTAGGCTTCAGTATAGTAGG
AGGATATGGTAGCCCTCATGGAGACTTACCCATTTATGTTAAAACAGTGTTTGCAAAGGG
AGCAGCCTCGGAAGATGGGCGTCTGAAGAGGGGTGATCAGATCATTGCTGTCAACGGGCA
GAGTCTAGAAGGGGTAACCCATGAAGAAGCCGTTGCCATCCTTAAGCGGACAAAAGGCAC
TGTCACTTTGATGGTTCTCTCCTGAATTTGCTGCTGGAGTTGAGCTACCTCAGCCCCTCT
TATGCATCCCGTGGTGTAAAGAGAATGGAACCAGTCCTGTGGACTCTTCCCAGTCTGTGG
TCATCTGGCTCTTCAAAACAGAAGGGAGGAAATAGCATTTAAGTTTGCTTTTCTACTGAC
AACAGTGCATCACTTTTCCTTTCTCCTTGTATTTTGTGATATAAACTCAAAGAAAAGGAC
TCTTGGCATGGGTAAATCCAGTCTTTCTTCCTGAAGATATCTGATATTTCATAATCATGA
GGGCAAAAATTAATATGTGTTCAACTGGTTTGTACAGAAAGAAAATTCAAAGCTAACCAA
GGAGGAATGTCTTCATGAAATTAAAATAAAAAAATGAAAATATAAAGAAGAAACCTGAAA
TTTATAAAAATCTTATTTTGTTAATCCACCTTGTCTCCCCAATTCTAACCAAAAAAAAAG
GTTTTGCTGAAAATCTTTAAAAATACTTTTAATTACTTTCATTATTTAAAAATTTTGAAT
CTTATTAAAAATCACATCTCCCCACCTCTAATATATACATACATAGTTTCCTTCCAAAAT
GGGCTTCAAGATTGAGTAACTAGCAAATACAGGAAGCACTGTCCCTAAGTCTGTAAAGAA
ACCATTTATTGCACAGCTCAATGGTCATTTTCATTTTTGACCTGTTGTAATATATTTTCA
TGTTTCTGTAAGTAAAATGATGCTGCTGCCTTGTATTGACTGTGGTTTGTCTAGAAGCAG
CCATGCTTACTGTGGAGGAACATAGATGACTCTCCAAATTGTCAGTACTGGTTTAAGGGA
TGCAGCACTAAAAATGTGTCAGTGTGCTGTGCAATTGGTTTTCAATTAGTATTAATGACA
GAAAAAAAAAAAAAGCAATGCGTTAGTAATTATTTTGGTTGTATGCCATTAGTAAATTGA
TAGAAAACTTAAGGGGATTAACATAACTTCATTTCATTGCTTTATATTAACATCGTATAA
TACAATAGTTTAAGACTAAGGGAAACAGATGGAGCTGTTTATTGAGACAACTGGTGAGGA
ATTATCATGTGTTCATTCCCATTTTAGAGCGTGAAACTCCTACATTAGAATATATAAAGT
CACTTTAAATATTATCTATATTTGTAACAAAAGTAGTGTACAGATATTTTATTACAGCAC
TTTTGTGTAAAATGCAGAACTGAAGTGAATAAATAAGTTTTGTGGCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCAGTGTAAGTCTATTACACTGGACCGGGGACCAGATGGCTTAGGCTTCAGTATAGTAGG
AGGATATGGTAGCCCTCATGGAGACTTACCCATTTATGTTAAAACAGTGTTTGCAAAGGG
AGCAGCCTCGGAAGATGGGCGTCTGAAGAGGGGTGATCAGATCATTGCTGTCAACGGGCA
GAGTCTAGAAGGGGTAACCCATGAAGAAGCCGTTGCCATCCTTAAGCGGACAAAAGGCAC
TGTCACTTTGATGGTTCTCTCCTGAATTTGCTGCTGGAGTTGAGCTACCTCAGCCCCTCT
TATGCATCCCGTGGTGTAAAGAGAATGGAACCAGTCCTGTGGACTCTTCCCAGTCTGTGG
TCATCTGGCTCTTCAAAACAGAAGGGAGGAAATAGCATTTAAGTTTGCTTTTCTACTGAC
AACAGTGCATCACTTTTCCTTTCTCCTTGTATTTTGTGATATAAACTCAAAGAAAAGGAC
TCTTGGCATGGGTAAATCCAGTCTTTCTTCCTGAAGATATCTGATATTTCATAATCATGA
GGGCAAAAATTAATATGTGTTCAACTGGTTTGTACAGAAAGAAAATTCAAAGCTAACCAA
GGAGGAATGTCTTCATGAAATTAAAATAAAAAAATGAAAATATAAAGAAGAAACCTGAAA
TTTATAAAAATCTTATTTTGTTAATCCACCTTGTCTCCCCAATTCTAACCAAAAAAAAAG
GTTTTGCTGAAAATCTTTAAAAATACTTTTAATTACTTTCATTATTTAAAAATTTTGAAT
CTTATTAAAAATCACATCTCCCCACCTCTAATATATACATACATAGTTTCCTTCCAAAAT
GGGCTTCAAGATTGAGTAACTAGCAAATACAGGAAGCACTGTCCCTAAGTCTGTAAAGAA
ACCATTTATTGCACAGCTCAATGGTCATTTTCATTTTTGACCTGTTGTAATATATTTTCA
TGTTTCTGTAAGTAAAATGATGCTGCTGCCTTGTATTGACTGTGGTTTGTCTAGAAGCAG
CCATGCTTACTGTGGAGGAACATAGATGACTCTCCAAATTGTCAGTACTGGTTTAAGGGA
TGCAGCACTAAAAATGTGTCAGTGTGCTGTGCAATTGGTTTTCAATTAGTATTAATGACA
GAAAAAAAAAAAAAGCAATGCGTTAGTAATTATTTTGGTTGTATGCCATTAGTAAATTGA
TAGAAAACTTAAGGGGATTAACATAACTTCATTTCATTGCTTTATATTAACATCGTATAA
TACAATAGTTTAAGACTAAGGGAAACAGATGGAGCTGTTTATTGAGACAACTGGTGAGGA
ATTATCATGTGTTCATTCCCATTTTAGAGCGTGAAACTCCTACATTAGAATATATAAAGT
CACTTTAAATATTATCTATATTTGTAACAAAAGTAGTGTACAGATATTTTATTACAGCAC
TTTTGTGTAAAATGCAGAACTGAAGTGAATAAATAAGTTTTGTGGCAC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               117-235, + strand, RNAz p=0.589636

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               117-235, + strand, RNAz p=0.589636

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               117-1363, gnl|bosTau2|chr8 (14852770-14854018)
               

               
               117-1363, gnl|Hg17|chr9 (13097112-13095836)
               

               
               117-1363, gnl|Mm7|chr4 (80683497-80682364)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               117-1363, gnl|bosTau2|chr8 (14852770-14854018)
               

               
               117-1363, gnl|Hg17|chr9 (13097112-13095836)
               

               
               117-1363, gnl|Mm7|chr4 (80683497-80682364)

Expressed library(ies): 20 entry(ies)

More info

Expressed library(ies): 20 entry(ies)

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               vin (0.332557)
               

               
               bfe (0.299715)
               

               
               liv (0.292569)
               

               
               kid (0.259471)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               aor (0.195274)
               

               
               gul (0.177588)
               

               
               rec (0.17307)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               hlv (0.139256)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.332557)
               

               
               bfe (0.299715)
               

               
               liv (0.292569)
               

               
               kid (0.259471)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               aor (0.195274)
               

               
               gul (0.177588)
               

               
               rec (0.17307)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               hlv (0.139256)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)

	117-1363, gnl\|bosTau2\|chr8 (14852770-14854018)
	117-1363, gnl\|Hg17\|chr9 (13097112-13095836)
	117-1363, gnl\|Mm7\|chr4 (80683497-80682364)

	vin (0.332557)
	bfe (0.299715)
	liv (0.292569)
	kid (0.259471)
	cbe (0.239234)
	mgp (0.230681)
	aor (0.195274)
	gul (0.177588)
	rec (0.17307)
	fco (0.157208)
	tbr (0.154178)
	fat (0.147427)
	lin (0.145603)
	hlv (0.139256)
	ret (0.128733)
	sug (0.127291)
	bla (0.124347)
	tra (0.123092)
	eep (0.122564)
	ebs (0.118301)