Non-Coding RNA Search

Ss1.1-Pig4-TMW8023H09.5

Sequence:


               
               GACTGGAGTTTTTTTTTTTTTTTTTTTGTGAATGTTCATACCACTTTATTTGCAATGGAA
AACTGGAAACAGCACAGATGTTCATCCACAAGGAAATGTGTATCAATACTGTGATATATG
TATATAAATATA------------------------------------------------
------------------------------------------------------------
------------------------------------------------TGTTATGGAGAG
ACAGAATATGTATCAGTGGTTGCCTGGTCAGGTTGGGTAGCAAGGAGGAAAATGAGGCAG
GGGTTAAAAAAAAGACTCATTTTT------------------------------------
------------------------------------------------------------
------------------------ACAAAACTCACATTTTTGTCCAAAAGTTTTCATGCT
AAACTCAAATATGATTCTTATATATTCTACAAGGAATGAACTTTAGATGAAAATGATTCT
GACCCTAAGTTCTCCGTCTCCACTGTGATGAAATGGTCAGGCTTACATCATAGCGGGCAT
GGCATATGATAGAGCTGTGATTTGTACCTCAAATCTGGCTGCCATTTCCCACACTCCTTA
CACACAAAGAAAAGTAGGTGAGGTCTTATCCATGACACCCGGGCCACTATCACACTACCG
GAAAAACAGCCCAAACTCCTTGCTTCACTAATCGCAGGTCAATTGTGTCATCTTTGTGTG
GGAAGAGTGACCTAATTATCATTCCTACCTGCTGACTAAAGTAGCATATCACTTGTAAGT
CATTCATTTTCCTACCAGTTAGCCCTCTCCGCTCCATTCCTCCCTCCATTCAAAAGTCTG
AAAAGCTAATAGCAGTTTGGGACTTTTTCCTTTAAAGTTGCCTTATTCATTTCCGTTCCA
GGATGGCTCAGCTTCGGTAAGATATTTGGCTCTCTTCTTCAGCACGTCGCCACACCTGGT
TCCAGGATCTGTTCTGAGAGCTAAACAGAACTCTCCTAGGAGGATCTCAGGGGTGGAAAA
GCATGCCTGAGAAAGTGATGGAAAGAGGCAAAGCTTTGGGAGCGGGCTGACCTCAGGCAG
GATACTTAGGTCTCTGACTTGCCGCTTTCTCGCAAGGGGTATGATGTCCAGCCACCGGTT
GTTTGAGGGGAGTAAATGTGATAAGGTTGGGAAGGCATCTAGTACAGTGCCCCGCGCCCA
GGCAAGTAAGTGAGGGAAGTTCTGTTCCCTTCTATCAAATTTCTTTAAAATGAGAGGGAA
AGAAAGTAGGAAGCCCGACCATGAAAGAATGGAGGTCGCTTTCGGCCGAAAGGATACAAG
GATACTTATCTCTATACAAAGATCTGGTTCAAAGAAGCCTCCAGATTAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACTGGAGTTTTTTTTTTTTTTTTTTTGTGAATGTTCATACCACTTTATTTGCAATGGAA
AACTGGAAACAGCACAGATGTTCATCCACAAGGAAATGTGTATCAATACTGTGATATATG
TATATAAATATA------------------------------------------------
------------------------------------------------------------
------------------------------------------------TGTTATGGAGAG
ACAGAATATGTATCAGTGGTTGCCTGGTCAGGTTGGGTAGCAAGGAGGAAAATGAGGCAG
GGGTTAAAAAAAAGACTCATTTTT------------------------------------
------------------------------------------------------------
------------------------ACAAAACTCACATTTTTGTCCAAAAGTTTTCATGCT
AAACTCAAATATGATTCTTATATATTCTACAAGGAATGAACTTTAGATGAAAATGATTCT
GACCCTAAGTTCTCCGTCTCCACTGTGATGAAATGGTCAGGCTTACATCATAGCGGGCAT
GGCATATGATAGAGCTGTGATTTGTACCTCAAATCTGGCTGCCATTTCCCACACTCCTTA
CACACAAAGAAAAGTAGGTGAGGTCTTATCCATGACACCCGGGCCACTATCACACTACCG
GAAAAACAGCCCAAACTCCTTGCTTCACTAATCGCAGGTCAATTGTGTCATCTTTGTGTG
GGAAGAGTGACCTAATTATCATTCCTACCTGCTGACTAAAGTAGCATATCACTTGTAAGT
CATTCATTTTCCTACCAGTTAGCCCTCTCCGCTCCATTCCTCCCTCCATTCAAAAGTCTG
AAAAGCTAATAGCAGTTTGGGACTTTTTCCTTTAAAGTTGCCTTATTCATTTCCGTTCCA
GGATGGCTCAGCTTCGGTAAGATATTTGGCTCTCTTCTTCAGCACGTCGCCACACCTGGT
TCCAGGATCTGTTCTGAGAGCTAAACAGAACTCTCCTAGGAGGATCTCAGGGGTGGAAAA
GCATGCCTGAGAAAGTGATGGAAAGAGGCAAAGCTTTGGGAGCGGGCTGACCTCAGGCAG
GATACTTAGGTCTCTGACTTGCCGCTTTCTCGCAAGGGGTATGATGTCCAGCCACCGGTT
GTTTGAGGGGAGTAAATGTGATAAGGTTGGGAAGGCATCTAGTACAGTGCCCCGCGCCCA
GGCAAGTAAGTGAGGGAAGTTCTGTTCCCTTCTATCAAATTTCTTTAAAATGAGAGGGAA
AGAAAGTAGGAAGCCCGACCATGAAAGAATGGAGGTCGCTTTCGGCCGAAAGGATACAAG
GATACTTATCTCTATACAAAGATCTGGTTCAAAGAAGCCTCCAGATTAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               208-1210, gnl|bosTau2|chr3 (38323287-38322226)
               

               
               208-1210, gnl|Hg17|chr1 (95106659-95105478)
               

               
               208-1210, gnl|Mm7|chr3 (121193803-121194907)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               208-1210, gnl|bosTau2|chr3 (38323287-38322226)
               

               
               208-1210, gnl|Hg17|chr1 (95106659-95105478)
               

               
               208-1210, gnl|Mm7|chr3 (121193803-121194907)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               cmu (0.186393)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.186393)

	208-1210, gnl\|bosTau2\|chr3 (38323287-38322226)
	208-1210, gnl\|Hg17\|chr1 (95106659-95105478)
	208-1210, gnl\|Mm7\|chr3 (121193803-121194907)