Ss1.1-Pig4-TMW8023H10.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TACATCTACTGTGATTTTTTTCAGCGAGCAGACAAACCACATCAGGACTGTCACTTCACC ATCCGAGGGGGCCGCGTGAGGGAAGACGGCAGCTATCAGCTCCCCGTCGTCGTCCTGATG CTGAATCTCCCCCAGCCCTCGAGGGACTCGCCGACGCTGCTCACGCCTGGAATGATGGAA AACCTCTTCCACGAGATGGGACACGCCATGCATTCGATGCTGGGCCGGACTCGCTACCAG CACGTCACCGGGACCAGGTGCCCCACGGACTTCGCCGAGGTCCCGTCCATCCTGATGGAG TACTTCGCCGCCGACTACCGCGTGGTGCAGCAGTTCGCCCGCCACTACCAGACGGGCCAG TCACTGCCCAGAAGCATGGTGTCCCGACTCTGCGAGTCTAAAAAGGTCTGCGCTGCGGCC GACATGCAGCTCCAGGTCTTCTACGCGGCTCTGGATCAGCTCTACCACGGCCCGCACCCC CGGGGGCGGTGCACCACGGACGTCCTCAGAGCCACGCAGGAGAGGTTCTACGGCCTGCCC TACGTCCCCGGCACGGCCTGGCAGCTGCGGTTCAGCCACCTCGTGGGCTACGGTGCCAAG TACTACTCATACCTGATGTCGCGGGCGGTGGCCTCCATGGTCTGGAGAGAGTGTTTCCTA CAGGATCCTTTCAACAGGGCGGCGGGGGAGCGCTACCGGCGGGAGATGCTGGCGCACGGC GGGGGCAAGGAGCCCCTGCTCATGGTGGAAGGTATGCTTCAGAAGCGCCCTTCCATCGAC GACTTCGTAAACGCCCTCGTGTGCGACTTGGATCTGGACGCGGAGAGCTTCCTCGCGGAC TCGGAGTGACGGCGGAGGCAGAGGCGCGGGGTCAAAGCCGGGTGGAGGAGACAAGAATGG GTGCTCGCTTCCGACGGCGGGATTCACGTCTGTCCTGACTCGTGAAAAGCCGTAAACCGA TGGAACTCGCAATAAATTGTTTGTTTTCATCCTGAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TACATCTACTGTGATTTTTTTCAGCGAGCAGACAAACCACATCAGGACTGTCACTTCACC ATCCGAGGGGGCCGCGTGAGGGAAGACGGCAGCTATCAGCTCCCCGTCGTCGTCCTGATG CTGAATCTCCCCCAGCCCTCGAGGGACTCGCCGACGCTGCTCACGCCTGGAATGATGGAA AACCTCTTCCACGAGATGGGACACGCCATGCATTCGATGCTGGGCCGGACTCGCTACCAG CACGTCACCGGGACCAGGTGCCCCACGGACTTCGCCGAGGTCCCGTCCATCCTGATGGAG TACTTCGCCGCCGACTACCGCGTGGTGCAGCAGTTCGCCCGCCACTACCAGACGGGCCAG TCACTGCCCAGAAGCATGGTGTCCCGACTCTGCGAGTCTAAAAAGGTCTGCGCTGCGGCC GACATGCAGCTCCAGGTCTTCTACGCGGCTCTGGATCAGCTCTACCACGGCCCGCACCCC CGGGGGCGGTGCACCACGGACGTCCTCAGAGCCACGCAGGAGAGGTTCTACGGCCTGCCC TACGTCCCCGGCACGGCCTGGCAGCTGCGGTTCAGCCACCTCGTGGGCTACGGTGCCAAG TACTACTCATACCTGATGTCGCGGGCGGTGGCCTCCATGGTCTGGAGAGAGTGTTTCCTA CAGGATCCTTTCAACAGGGCGGCGGGGGAGCGCTACCGGCGGGAGATGCTGGCGCACGGC GGGGGCAAGGAGCCCCTGCTCATGGTGGAAGGTATGCTTCAGAAGCGCCCTTCCATCGAC GACTTCGTAAACGCCCTCGTGTGCGACTTGGATCTGGACGCGGAGAGCTTCCTCGCGGAC TCGGAGTGACGGCGGAGGCAGAGGCGCGGGGTCAAAGCCGGGTGGAGGAGACAAGAATGG GTGCTCGCTTCCGACGGCGGGATTCACGTCTGTCCTGACTCGTGAAAAGCCGTAAACCGA TGGAACTCGCAATAAATTGTTTGTTTTCATCCTGAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 83-202, + strand, RNAz p=0.755788 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 83-202, + strand, RNAz p=0.755788 |
| Aligned organism(s): 74 entry(ies) | More info |
| Aligned organism(s): 74 entry(ies) | Help | Less info |
| 44-261, gnl|bosTau2|chr12 (19133160-19133378) | |
| 44-261, gnl|canFam2|chr25 (17808583-17808381) | |
| 44-261, gnl|danRer3|chr8 (34174779-34174575) | |
| 44-261, gnl|dasNov1|scaffold_101635 (40439-40234) | |
| 44-261, gnl|echTel1|scaffold_213685 (6279-6481) | |
| 44-261, gnl|fr1|chrUn (53649357-53649150) | |
| 44-261, gnl|galGal2|chr1 (169428857-169428655) | |
| 44-261, gnl|Hg17|chr13 (23309897-23309676) | |
| 44-261, gnl|hg17|chr7 (111969765-111969969) | |
| 44-261, gnl|loxAfr1|scaffold_7772 (51378-51176) | |
| 44-261, gnl|mm7|chr14 (55698990-55698788) | |
| 44-261, gnl|Mm7|chr14 (55698784-55699001) | |
| 44-261, gnl|monDom2|scaffold_15 (32708058-32708260) | |
| 44-261, gnl|oryCun1|scaffold_152862 (833-1006) | |
| 44-261, gnl|panTro1|chr6 (113986059-113986263) | |
| 44-261, gnl|rheMac2|chr3 (150122246-150122450) | |
| 44-261, gnl|rn3|chr15 (39940760-39940558) | |
| 44-261, gnl|tetNig1|chrUn_random (13516344-13516137) | |
| 44-261, gnl|xenTro1|scaffold_417 (762872-763074) | |
| 548-678, gnl|bosTau2|chr12 (19162187-19162316) | |
| 548-678, gnl|canFam2|chr25 (17889059-17888938) | |
| 548-678, gnl|canFam2|chr25 (17889062-17888934) | |
| 548-678, gnl|canFam2|chr25 (17889059-17888938) | |
| 548-678, gnl|danRer3|chr8 (34180188-34180060) | |
| 548-678, gnl|danRer3|chr8 (34180185-34180063) | |
| 548-678, gnl|dasNov1|scaffold_101635 (40853-40720) | |
| 548-678, gnl|dasNov1|scaffold_101635 (40852-40719) | |
| 548-678, gnl|dasNov1|scaffold_25537 (6674-6802) | |
| 548-678, gnl|echTel1|scaffold_317046 (101695-101569) | |
| 548-678, gnl|echTel1|scaffold_317046 (101694-101568) | |
| 548-678, gnl|fr1|chrUn (53651460-53651332) | |
| 548-678, gnl|fr1|chrUn (53651457-53651336) | |
| 548-678, gnl|galGal2|chr1 (169460518-169460390) | |
| 548-678, gnl|hg17|chr1 (235266555-235266669) | |
| 548-678, gnl|hg17|chr13 (23232232-23232360) | |
| 548-678, gnl|Hg17|chr13 (23232365-23232234) | |
| 548-678, gnl|hg17|chr7 (111969341-111969463) | |
| 548-678, gnl|loxAfr1|scaffold_56000 (6656-6784) | |
| 548-678, gnl|loxAfr1|scaffold_76311 (4631-4510) | |
| 548-678, gnl|loxAfr1|scaffold_76311 (4630-4509) | |
| 548-678, gnl|mm7|chr14 (55739817-55739689) | |
| 548-678, gnl|Mm7|chr14 (55739683-55739813) | |
| 548-678, gnl|mm7|chr2 (155283626-155283504) | |
| 548-678, gnl|mm7|chr2 (155283625-155283504) | |
| 548-678, gnl|monDom2|scaffold_15 (32650487-32650615) | |
| 548-678, gnl|oryCun1|scaffold_107846 (442-314) | |
| 548-678, gnl|oryCun1|scaffold_152862 (102-205) | |
| 548-678, gnl|oryCun1|scaffold_152862 (104-206) | |
| 548-678, gnl|panTro1|chr1 (219233604-219233718) | |
| 548-678, gnl|panTro1|chr14 (22417314-22417442) | |
| 548-678, gnl|panTro1|chr6 (113985634-113985757) | |
| 548-678, gnl|rheMac2|chr17 (4117249-4117377) | |
| 548-678, gnl|rheMac2|chr3 (150121823-150121945) | |
| 548-678, gnl|rheMac2|chr3 (150121824-150121946) | |
| 548-678, gnl|rn3|chr15 (39981075-39980953) | |
| 548-678, gnl|rn3|chr15 (39981077-39980949) | |
| 548-678, gnl|rn3|chr15 (39981074-39980953) | |
| 548-678, gnl|tetNig1|chrUn_random (13517989-13517861) | |
| 548-678, gnl|tetNig1|chrUn_random (13517986-13517864) | |
| 548-678, gnl|xenTro1|scaffold_417 (760443-760524) | |
| 743-852, gnl|bosTau2|chr12 (19178640-19178749) | |
| 743-852, gnl|canFam2|chr25 (17916423-17916248) | |
| 743-852, gnl|dasNov1|scaffold_101635 (41079-40908) | |
| 743-852, gnl|echTel1|scaffold_233397 (6073-6228) | |
| 743-852, gnl|hg17|chr13 (23202432-23202603) | |
| 743-852, gnl|Hg17|chr13 (23202593-23202484) | |
| 743-852, gnl|loxAfr1|scaffold_5486 (24688-24858) | |
| 743-852, gnl|mm7|chr14 (55771178-55771019) | |
| 743-852, gnl|Mm7|chr14 (55771032-55771141) | |
| 743-852, gnl|monDom2|scaffold_15 (32595020-32595190) | |
| 743-852, gnl|oryCun1|scaffold_207427 (42310-42479) | |
| 743-852, gnl|panTro1|chr14 (22387104-22387275) | |
| 743-852, gnl|rheMac2|chr17 (4086423-4086593) | |
| 743-852, gnl|rn3|chr15 (40006366-40006207) |
| Aligned organism(s): 74 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 44-261, gnl|bosTau2|chr12 (19133160-19133378) | |
| 44-261, gnl|canFam2|chr25 (17808583-17808381) | |
| 44-261, gnl|danRer3|chr8 (34174779-34174575) | |
| 44-261, gnl|dasNov1|scaffold_101635 (40439-40234) | |
| 44-261, gnl|echTel1|scaffold_213685 (6279-6481) | |
| 44-261, gnl|fr1|chrUn (53649357-53649150) | |
| 44-261, gnl|galGal2|chr1 (169428857-169428655) | |
| 44-261, gnl|Hg17|chr13 (23309897-23309676) | |
| 44-261, gnl|hg17|chr7 (111969765-111969969) | |
| 44-261, gnl|loxAfr1|scaffold_7772 (51378-51176) | |
| 44-261, gnl|mm7|chr14 (55698990-55698788) | |
| 44-261, gnl|Mm7|chr14 (55698784-55699001) | |
| 44-261, gnl|monDom2|scaffold_15 (32708058-32708260) | |
| 44-261, gnl|oryCun1|scaffold_152862 (833-1006) | |
| 44-261, gnl|panTro1|chr6 (113986059-113986263) | |
| 44-261, gnl|rheMac2|chr3 (150122246-150122450) | |
| 44-261, gnl|rn3|chr15 (39940760-39940558) | |
| 44-261, gnl|tetNig1|chrUn_random (13516344-13516137) | |
| 44-261, gnl|xenTro1|scaffold_417 (762872-763074) | |
| 548-678, gnl|bosTau2|chr12 (19162187-19162316) | |
| 548-678, gnl|canFam2|chr25 (17889059-17888938) | |
| 548-678, gnl|canFam2|chr25 (17889062-17888934) | |
| 548-678, gnl|canFam2|chr25 (17889059-17888938) | |
| 548-678, gnl|danRer3|chr8 (34180188-34180060) | |
| 548-678, gnl|danRer3|chr8 (34180185-34180063) | |
| 548-678, gnl|dasNov1|scaffold_101635 (40853-40720) | |
| 548-678, gnl|dasNov1|scaffold_101635 (40852-40719) | |
| 548-678, gnl|dasNov1|scaffold_25537 (6674-6802) | |
| 548-678, gnl|echTel1|scaffold_317046 (101695-101569) | |
| 548-678, gnl|echTel1|scaffold_317046 (101694-101568) | |
| 548-678, gnl|fr1|chrUn (53651460-53651332) | |
| 548-678, gnl|fr1|chrUn (53651457-53651336) | |
| 548-678, gnl|galGal2|chr1 (169460518-169460390) | |
| 548-678, gnl|hg17|chr1 (235266555-235266669) | |
| 548-678, gnl|hg17|chr13 (23232232-23232360) | |
| 548-678, gnl|Hg17|chr13 (23232365-23232234) | |
| 548-678, gnl|hg17|chr7 (111969341-111969463) | |
| 548-678, gnl|loxAfr1|scaffold_56000 (6656-6784) | |
| 548-678, gnl|loxAfr1|scaffold_76311 (4631-4510) | |
| 548-678, gnl|loxAfr1|scaffold_76311 (4630-4509) | |
| 548-678, gnl|mm7|chr14 (55739817-55739689) | |
| 548-678, gnl|Mm7|chr14 (55739683-55739813) | |
| 548-678, gnl|mm7|chr2 (155283626-155283504) | |
| 548-678, gnl|mm7|chr2 (155283625-155283504) | |
| 548-678, gnl|monDom2|scaffold_15 (32650487-32650615) | |
| 548-678, gnl|oryCun1|scaffold_107846 (442-314) | |
| 548-678, gnl|oryCun1|scaffold_152862 (102-205) | |
| 548-678, gnl|oryCun1|scaffold_152862 (104-206) | |
| 548-678, gnl|panTro1|chr1 (219233604-219233718) | |
| 548-678, gnl|panTro1|chr14 (22417314-22417442) | |
| 548-678, gnl|panTro1|chr6 (113985634-113985757) | |
| 548-678, gnl|rheMac2|chr17 (4117249-4117377) | |
| 548-678, gnl|rheMac2|chr3 (150121823-150121945) | |
| 548-678, gnl|rheMac2|chr3 (150121824-150121946) | |
| 548-678, gnl|rn3|chr15 (39981075-39980953) | |
| 548-678, gnl|rn3|chr15 (39981077-39980949) | |
| 548-678, gnl|rn3|chr15 (39981074-39980953) | |
| 548-678, gnl|tetNig1|chrUn_random (13517989-13517861) | |
| 548-678, gnl|tetNig1|chrUn_random (13517986-13517864) | |
| 548-678, gnl|xenTro1|scaffold_417 (760443-760524) | |
| 743-852, gnl|bosTau2|chr12 (19178640-19178749) | |
| 743-852, gnl|canFam2|chr25 (17916423-17916248) | |
| 743-852, gnl|dasNov1|scaffold_101635 (41079-40908) | |
| 743-852, gnl|echTel1|scaffold_233397 (6073-6228) | |
| 743-852, gnl|hg17|chr13 (23202432-23202603) | |
| 743-852, gnl|Hg17|chr13 (23202593-23202484) | |
| 743-852, gnl|loxAfr1|scaffold_5486 (24688-24858) | |
| 743-852, gnl|mm7|chr14 (55771178-55771019) | |
| 743-852, gnl|Mm7|chr14 (55771032-55771141) | |
| 743-852, gnl|monDom2|scaffold_15 (32595020-32595190) | |
| 743-852, gnl|oryCun1|scaffold_207427 (42310-42479) | |
| 743-852, gnl|panTro1|chr14 (22387104-22387275) | |
| 743-852, gnl|rheMac2|chr17 (4086423-4086593) | |
| 743-852, gnl|rn3|chr15 (40006366-40006207) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| pty (0.285429) | |
| ecc (0.23007) | |
| nep (0.183925) | |
| cut (0.169924) | |
| cag (0.151194) | |
| cst (0.140036) | |
| che (0.136314) | |
| ese (0.126502) | |
| jej (0.0989218) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pty (0.285429) | |
| ecc (0.23007) | |
| nep (0.183925) | |
| cut (0.169924) | |
| cag (0.151194) | |
| cst (0.140036) | |
| che (0.136314) | |
| ese (0.126502) | |
| jej (0.0989218) |