Ss1.1-Pig4-TMW8023H21.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCACGCGTCCGCCCCCAAACTCCTCATCACCTAAGTTTCAAATGGGCATCTGGGTGGAGC CGCAGAGAGCACGTGTCCCGGCTCCCTGCTTGGCGATGCCACGCGCTCAGACTGGGTGAC GCTGAGCAGCTGCTTTCTGCTCCTGACGACACACTCCTGCTGTGGCACTGCTGACGGCTT CCCGCACAGCACACCGCTCCTTCCAGGCTGAACAACCGCAGGAAGTCCTGGCTGTATAAA GTGGGGTCCCTCTTTGTGATCGGACACCTCGTGGCGAACGCCATGTGCTCGGCCACGGGC CTGTACGTGTCCCACTTCAACTACCCCGGTGGCGTGGCACTGCAGAGGCTGCACGAGCTG GTGCCCCCGCGCACAGATGTGTCTGTGCACATTGGCGTGGCTGCTGCACAGACGGGCGTG TCTCGGTTCTTGGAAGTCAACAGTGCCTGGAGGTACGAGAAGACGGAGGACCTGCAGCCC GGCTCGGAGCGCATGCTGGCCTACACGCACCTCCTGGTGGAGGCGGCGCCCGGGCACCTG ACCCCATACCGGGACACGCACCGGGTCCTGGCCAGCGTGCCCGGCACCACCGGGCTGAGT CTCAACCTGAGCAGACTGCCTCCCTTTGACGTCAACCTGCAGACAAAGCTGGTGCTTCTG GAGAGACTCGTGGGGCCTTCCTGATGAGGGGCCCAGTCCTGCCGGAACAGCACTGCTCCG CCGGCAACAACAGATGCGACCGTGGGGCAACCATCAGAGAACCACAGACCCGAGGGTTGC CTTGGTCGTCCAGACGGAGGGCTGTTCCCGGCAGCGGGACGTGGACCTTGCCCCGCGGAG CTGCCTTGGGGCGGCACCGGGGCCTCTCGGCATGTGAAGGGCCCCTGGGCATCGTCCCCA CCTGTGCCCCACACTGCAGGGCAGGGCCTGTTTGGGGGTCACGGGTGCACCATTTCCACT TCGGGTGAGATTTTAGGAGAGGAAGGTGTTCAAAAAGAATGTGAATAAAGTTGCAGGTGT CTTCTTGGCGCG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCACGCGTCCGCCCCCAAACTCCTCATCACCTAAGTTTCAAATGGGCATCTGGGTGGAGC CGCAGAGAGCACGTGTCCCGGCTCCCTGCTTGGCGATGCCACGCGCTCAGACTGGGTGAC GCTGAGCAGCTGCTTTCTGCTCCTGACGACACACTCCTGCTGTGGCACTGCTGACGGCTT CCCGCACAGCACACCGCTCCTTCCAGGCTGAACAACCGCAGGAAGTCCTGGCTGTATAAA GTGGGGTCCCTCTTTGTGATCGGACACCTCGTGGCGAACGCCATGTGCTCGGCCACGGGC CTGTACGTGTCCCACTTCAACTACCCCGGTGGCGTGGCACTGCAGAGGCTGCACGAGCTG GTGCCCCCGCGCACAGATGTGTCTGTGCACATTGGCGTGGCTGCTGCACAGACGGGCGTG TCTCGGTTCTTGGAAGTCAACAGTGCCTGGAGGTACGAGAAGACGGAGGACCTGCAGCCC GGCTCGGAGCGCATGCTGGCCTACACGCACCTCCTGGTGGAGGCGGCGCCCGGGCACCTG ACCCCATACCGGGACACGCACCGGGTCCTGGCCAGCGTGCCCGGCACCACCGGGCTGAGT CTCAACCTGAGCAGACTGCCTCCCTTTGACGTCAACCTGCAGACAAAGCTGGTGCTTCTG GAGAGACTCGTGGGGCCTTCCTGATGAGGGGCCCAGTCCTGCCGGAACAGCACTGCTCCG CCGGCAACAACAGATGCGACCGTGGGGCAACCATCAGAGAACCACAGACCCGAGGGTTGC CTTGGTCGTCCAGACGGAGGGCTGTTCCCGGCAGCGGGACGTGGACCTTGCCCCGCGGAG CTGCCTTGGGGCGGCACCGGGGCCTCTCGGCATGTGAAGGGCCCCTGGGCATCGTCCCCA CCTGTGCCCCACACTGCAGGGCAGGGCCTGTTTGGGGGTCACGGGTGCACCATTTCCACT TCGGGTGAGATTTTAGGAGAGGAAGGTGTTCAAAAAGAATGTGAATAAAGTTGCAGGTGT CTTCTTGGCGCG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 199-382, gnl|bosTau2|chr5 (76294923-76295106) | |
| 199-382, gnl|canFam2|chr10 (20287366-20287179) | |
| 199-382, gnl|danRer3|chr20 (56584906-56584720) | |
| 199-382, gnl|echTel1|scaffold_316962 (39719-39538) | |
| 199-382, gnl|fr1|chrUn (52074555-52074744) | |
| 199-382, gnl|galGal2|chr1 (15934605-15934804) | |
| 199-382, gnl|hg17|chr22 (48618839-48619031) | |
| 199-382, gnl|Hg17|chr22 (48619021-48618840) | |
| 199-382, gnl|mm7|chr15 (88888886-88889071) | |
| 199-382, gnl|Mm7|chr15 (88889064-88888887) | |
| 199-382, gnl|oryCun1|scaffold_173883 (67530-67722) | |
| 199-382, gnl|panTro1|chr23 (49039454-49039646) | |
| 199-382, gnl|rheMac2|chr10 (93867062-93867254) | |
| 199-382, gnl|rn3|chr7 (127144546-127144729) | |
| 199-382, gnl|tetNig1|chr19 (5127317-5127125) | |
| 199-382, gnl|xenTro1|scaffold_24 (3138394-3138574) | |
| 451-689, gnl|bosTau2|chr5 (76295347-76295585) | |
| 451-689, gnl|canFam2|chr10 (20287872-20287711) | |
| 451-689, gnl|danRer3|chr20 (56585356-56585214) | |
| 451-689, gnl|echTel1|scaffold_316962 (40506-40342) | |
| 451-689, gnl|fr1|chrUn (52074131-52074271) | |
| 451-689, gnl|galGal2|chr1 (15931148-15931313) | |
| 451-689, gnl|hg17|chr22 (48618342-48618507) | |
| 451-689, gnl|Hg17|chr22 (48618577-48618342) | |
| 451-689, gnl|mm7|chr15 (88888162-88888324) | |
| 451-689, gnl|Mm7|chr15 (88888391-88888159) | |
| 451-689, gnl|panTro1|chr23 (49038957-49039122) | |
| 451-689, gnl|rheMac2|chr10 (93866561-93866726) | |
| 451-689, gnl|rn3|chr7 (127144059-127144219) | |
| 451-689, gnl|tetNig1|chr19 (5127778-5127640) | |
| 451-689, gnl|xenTro1|scaffold_24 (3136490-3136638) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 199-382, gnl|bosTau2|chr5 (76294923-76295106) | |
| 199-382, gnl|canFam2|chr10 (20287366-20287179) | |
| 199-382, gnl|danRer3|chr20 (56584906-56584720) | |
| 199-382, gnl|echTel1|scaffold_316962 (39719-39538) | |
| 199-382, gnl|fr1|chrUn (52074555-52074744) | |
| 199-382, gnl|galGal2|chr1 (15934605-15934804) | |
| 199-382, gnl|hg17|chr22 (48618839-48619031) | |
| 199-382, gnl|Hg17|chr22 (48619021-48618840) | |
| 199-382, gnl|mm7|chr15 (88888886-88889071) | |
| 199-382, gnl|Mm7|chr15 (88889064-88888887) | |
| 199-382, gnl|oryCun1|scaffold_173883 (67530-67722) | |
| 199-382, gnl|panTro1|chr23 (49039454-49039646) | |
| 199-382, gnl|rheMac2|chr10 (93867062-93867254) | |
| 199-382, gnl|rn3|chr7 (127144546-127144729) | |
| 199-382, gnl|tetNig1|chr19 (5127317-5127125) | |
| 199-382, gnl|xenTro1|scaffold_24 (3138394-3138574) | |
| 451-689, gnl|bosTau2|chr5 (76295347-76295585) | |
| 451-689, gnl|canFam2|chr10 (20287872-20287711) | |
| 451-689, gnl|danRer3|chr20 (56585356-56585214) | |
| 451-689, gnl|echTel1|scaffold_316962 (40506-40342) | |
| 451-689, gnl|fr1|chrUn (52074131-52074271) | |
| 451-689, gnl|galGal2|chr1 (15931148-15931313) | |
| 451-689, gnl|hg17|chr22 (48618342-48618507) | |
| 451-689, gnl|Hg17|chr22 (48618577-48618342) | |
| 451-689, gnl|mm7|chr15 (88888162-88888324) | |
| 451-689, gnl|Mm7|chr15 (88888391-88888159) | |
| 451-689, gnl|panTro1|chr23 (49038957-49039122) | |
| 451-689, gnl|rheMac2|chr10 (93866561-93866726) | |
| 451-689, gnl|rn3|chr7 (127144059-127144219) | |
| 451-689, gnl|tetNig1|chr19 (5127778-5127640) | |
| 451-689, gnl|xenTro1|scaffold_24 (3136490-3136638) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| duo (0.345602) | |
| nlu (0.191681) | |
| fhi (0.169578) | |
| cli (0.152812) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| ecc (0.115035) | |
| eje (0.0988338) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| duo (0.345602) | |
| nlu (0.191681) | |
| fhi (0.169578) | |
| cli (0.152812) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| ecc (0.115035) | |
| eje (0.0988338) |