Non-Coding RNA Search

Ss1.1-Pig4-TMW8023I08.3

Sequence:


               
               TACCACCAAAAGTGACACTGATTGGACCGAGGGAAGTGAAATCGAGGATTCTGATATTTC
TCCCAAGCCCACAGAAACCTCCATTAAAATATTAACCGGAAAAGTTGAAAAGACGGTTTC
AAATCATAGAAATGTGAACAAGCCAGTCGGTGGGATTCATGTTGCTGAGGCATTCATCAA
GAAAGAACTAAACGAAGATGTAAAGTGTGTAGATGTGGAAGACGATGACTGGGACATATC
ATCCTTAGAGGAAGAAAAATCTTTGGGGATGAAAATTGGGAGAGAACAGAAGGATCCTCT
GCCTATGAAGAATGAGTCAAATTATGCTCAAGTGCCAAGTGCCTGGGGTGCAACTAACCT
GAAAGGGCCAAAAGGAGGACTTCAGGATGAATCCAGCACCGTGAAAAGCAGCTTAGTAAC
TGTGACTGATTGGAGTGACTCTTCAGACGTATAACTGTCCCCCTGGGCCTCAGAAGGTCC
TGCTAGATGCCAGCAGTATTCCAGTCTCGCACTGTTTCCGTTCCCGGCCTGTGCAACGCA
AATGCTCCTGCCCGGCAGTATTTCCCACAATAACAAGGAAGCTGGCTCGCGAAGAACAAG
AGTCTCTTTAATGGCACCTAATACAATTTTGAAAAACAAATTGTCAACAGTATTTTGAAG
CATATAAAGGTGTTTGAGACTGCTGCTGCTTAAAAATAACGTGTCGCTGAAGTCATAAAA
ATTTTTTTCTTCAGAACGGTACTCTAGTGTTTAAGTGTATTTTTTTCAACTAATTTTTAA
GTGAATTTTTTTTTTTAAACTTATAGCTGGTTTTGGTTTGAATTAAAACTTTTTTTTTTT
CAGTGTTTCTTGAGGACATTGTCACATTGGAAGCATTTTATAAAATTCTGTTAGTATCCT
TAAAATTATATTAGTGGCATCTGTGAAATCTTAAAGAGTTGATTGCTTAATTTTCATATA
GAAGTAAGTTTAGAGTTATAAATATATAGCTAGGCCCATGTTAACATGGTACATTTTCCA
GAAGTACCTTTTCCATATGCAGTTTTGAGCCATTCTATGCATGTTGTTTCTTGTTAAATA
GTTACTTTAGAACTTTAAATACTATTTCTGCAGCATAATCTTTACCTTGGATATTTTATG
AATAATATGTAGCTATTTTAAATGTCAATTTATGAGACTATGACTAGAACACATTGAGTC
AATACTGAATTCATATGTTGTCTGTAGTTTTTTTTTTTTCCAATTTTTTAAACATGCTCA
ACGGTATTATAAAATACCTCAAAACCAATTTAGTTCTATTCTTAACAGTGACATTGTCAA
CAGTCAAAAAGTTCATATAAACTGGTTTTTTTGCATTTTTTAATATTTTGTGGTACTATT
ATACTCTGTTAAAAAAGAGGAAAAAAAAGTAACATTTAAACTAAATGGTTTGTTGGGTTT
TGGATCTTTCTTCATTTTGTCAACCTTTCAAGTAAAGCCCTCCATGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TACCACCAAAAGTGACACTGATTGGACCGAGGGAAGTGAAATCGAGGATTCTGATATTTC
TCCCAAGCCCACAGAAACCTCCATTAAAATATTAACCGGAAAAGTTGAAAAGACGGTTTC
AAATCATAGAAATGTGAACAAGCCAGTCGGTGGGATTCATGTTGCTGAGGCATTCATCAA
GAAAGAACTAAACGAAGATGTAAAGTGTGTAGATGTGGAAGACGATGACTGGGACATATC
ATCCTTAGAGGAAGAAAAATCTTTGGGGATGAAAATTGGGAGAGAACAGAAGGATCCTCT
GCCTATGAAGAATGAGTCAAATTATGCTCAAGTGCCAAGTGCCTGGGGTGCAACTAACCT
GAAAGGGCCAAAAGGAGGACTTCAGGATGAATCCAGCACCGTGAAAAGCAGCTTAGTAAC
TGTGACTGATTGGAGTGACTCTTCAGACGTATAACTGTCCCCCTGGGCCTCAGAAGGTCC
TGCTAGATGCCAGCAGTATTCCAGTCTCGCACTGTTTCCGTTCCCGGCCTGTGCAACGCA
AATGCTCCTGCCCGGCAGTATTTCCCACAATAACAAGGAAGCTGGCTCGCGAAGAACAAG
AGTCTCTTTAATGGCACCTAATACAATTTTGAAAAACAAATTGTCAACAGTATTTTGAAG
CATATAAAGGTGTTTGAGACTGCTGCTGCTTAAAAATAACGTGTCGCTGAAGTCATAAAA
ATTTTTTTCTTCAGAACGGTACTCTAGTGTTTAAGTGTATTTTTTTCAACTAATTTTTAA
GTGAATTTTTTTTTTTAAACTTATAGCTGGTTTTGGTTTGAATTAAAACTTTTTTTTTTT
CAGTGTTTCTTGAGGACATTGTCACATTGGAAGCATTTTATAAAATTCTGTTAGTATCCT
TAAAATTATATTAGTGGCATCTGTGAAATCTTAAAGAGTTGATTGCTTAATTTTCATATA
GAAGTAAGTTTAGAGTTATAAATATATAGCTAGGCCCATGTTAACATGGTACATTTTCCA
GAAGTACCTTTTCCATATGCAGTTTTGAGCCATTCTATGCATGTTGTTTCTTGTTAAATA
GTTACTTTAGAACTTTAAATACTATTTCTGCAGCATAATCTTTACCTTGGATATTTTATG
AATAATATGTAGCTATTTTAAATGTCAATTTATGAGACTATGACTAGAACACATTGAGTC
AATACTGAATTCATATGTTGTCTGTAGTTTTTTTTTTTTCCAATTTTTTAAACATGCTCA
ACGGTATTATAAAATACCTCAAAACCAATTTAGTTCTATTCTTAACAGTGACATTGTCAA
CAGTCAAAAAGTTCATATAAACTGGTTTTTTTGCATTTTTTAATATTTTGTGGTACTATT
ATACTCTGTTAAAAAAGAGGAAAAAAAAGTAACATTTAAACTAAATGGTTTGTTGGGTTT
TGGATCTTTCTTCATTTTGTCAACCTTTCAAGTAAAGCCCTCCATGAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61822229|ref|XP_583007.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61822229|ref|XP_583007.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               68-205, gnl|bosTau2|chr12 (37912547-37912684)
               

               
               68-205, gnl|Hg17|chr13 (95036398-95036261)
               

               
               68-205, gnl|Mm7|chr14 (113284761-113284624)
               


               
               376-1488, gnl|bosTau2|chr12 (37915998-37917084)
               

               
               376-1488, gnl|Hg17|chr13 (95032570-95031375)
               

               
               376-1488, gnl|Mm7|chr14 (113280878-113279873)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               68-205, gnl|bosTau2|chr12 (37912547-37912684)
               

               
               68-205, gnl|Hg17|chr13 (95036398-95036261)
               

               
               68-205, gnl|Mm7|chr14 (113284761-113284624)
               


               
               376-1488, gnl|bosTau2|chr12 (37915998-37917084)
               

               
               376-1488, gnl|Hg17|chr13 (95032570-95031375)
               

               
               376-1488, gnl|Mm7|chr14 (113280878-113279873)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               fco (1.10046)
               

               
               ece (0.45861)
               

               
               amn (0.417711)
               

               
               cbe (0.239234)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               ret (0.128733)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (1.10046)
               

               
               ece (0.45861)
               

               
               amn (0.417711)
               

               
               cbe (0.239234)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               ret (0.128733)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)

	68-205, gnl\|bosTau2\|chr12 (37912547-37912684)
	68-205, gnl\|Hg17\|chr13 (95036398-95036261)
	68-205, gnl\|Mm7\|chr14 (113284761-113284624)

	376-1488, gnl\|bosTau2\|chr12 (37915998-37917084)
	376-1488, gnl\|Hg17\|chr13 (95032570-95031375)
	376-1488, gnl\|Mm7\|chr14 (113280878-113279873)

	fco (1.10046)
	ece (0.45861)
	amn (0.417711)
	cbe (0.239234)
	fcc (0.197785)
	fbs (0.175346)
	eye (0.170503)
	lin (0.145603)
	lnt (0.142308)
	pla (0.133672)
	ret (0.128733)
	eep (0.122564)
	pgl (0.118483)
	ebs (0.118301)