Non-Coding RNA Search

Ss1.1-Pig4-TMW8023I09.5

Sequence:


               
               TCGGTGGCCCTGGGCTTGCTGGGGGAAATTCTGCTCCATCCTTTCAAAACTCCGCTGCTC
AGGAAGCTGTCCAAGGTGGGCACAGTGGGGTTGGGGCTGGGCTGCCTGGCGGGGCAGCTG
CTGTATTACTCGTTCCTCTGGAGCTGGTGGTCTGTTCTCCCCGTTCAGATCTTCAGCGCC
ATCAGCCACGGGGCTCTGTGGTGGGCAGTCGGGGCCTCCATAGAGGACCTGGCCACTCCG
GGCACGGAGAGACCGCTCCATGCCATGTTCCGAGGCCACTTTTACGGGGGCGGGGCCAGC
CTGGGCAGCTTTGTCGGCGGCTTCGTGGGGATGCGCTTCGGCCTGGCTGTTCTCTACCAG
GCCTGCTGCGTGGTCCTGTGGCTCTGGCTGGCCTTGTTCCTGTCCATCCGGCCCAGACTG
CCCCGAGAACGGAAGATCAACTACTCCAAGCTGCTGGCCGTGGAGGCCAGTGACACGAGC
GACTCTGAGCAGGGGACTGAACGGGACTGGCTTGTGAAGGCCATGAGGGACGAACCCTCA
GACTGAAGGGGCTGAGGGACCGTCAGGGTGCGCTGATCTGGGAAGGAGCCAAGCGGATGG
ACAGACCAGCCTGCCCGGGGGCAAAACCCATGAGTCCTGCCGGGGCTGCCGGTAGCCCTG
GTGGGGAGAAGTGTGTCTGTGCCGAGGCCCCAAGGGATCATCTCATTGCATGATTTTCCT
TACTTTTGTGGTAAAAGGAGATTAACTTTTTGCTGTTCGACTTTTAAAAATAATGGAGCA
AGAATACATTTGCTAAAAAAACCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGGTGGCCCTGGGCTTGCTGGGGGAAATTCTGCTCCATCCTTTCAAAACTCCGCTGCTC
AGGAAGCTGTCCAAGGTGGGCACAGTGGGGTTGGGGCTGGGCTGCCTGGCGGGGCAGCTG
CTGTATTACTCGTTCCTCTGGAGCTGGTGGTCTGTTCTCCCCGTTCAGATCTTCAGCGCC
ATCAGCCACGGGGCTCTGTGGTGGGCAGTCGGGGCCTCCATAGAGGACCTGGCCACTCCG
GGCACGGAGAGACCGCTCCATGCCATGTTCCGAGGCCACTTTTACGGGGGCGGGGCCAGC
CTGGGCAGCTTTGTCGGCGGCTTCGTGGGGATGCGCTTCGGCCTGGCTGTTCTCTACCAG
GCCTGCTGCGTGGTCCTGTGGCTCTGGCTGGCCTTGTTCCTGTCCATCCGGCCCAGACTG
CCCCGAGAACGGAAGATCAACTACTCCAAGCTGCTGGCCGTGGAGGCCAGTGACACGAGC
GACTCTGAGCAGGGGACTGAACGGGACTGGCTTGTGAAGGCCATGAGGGACGAACCCTCA
GACTGAAGGGGCTGAGGGACCGTCAGGGTGCGCTGATCTGGGAAGGAGCCAAGCGGATGG
ACAGACCAGCCTGCCCGGGGGCAAAACCCATGAGTCCTGCCGGGGCTGCCGGTAGCCCTG
GTGGGGAGAAGTGTGTCTGTGCCGAGGCCCCAAGGGATCATCTCATTGCATGATTTTCCT
TACTTTTGTGGTAAAAGGAGATTAACTTTTTGCTGTTCGACTTTTAAAAATAATGGAGCA
AGAATACATTTGCTAAAAAAACCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               120-239, + strand, RNAz p=0.730119

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-239, + strand, RNAz p=0.730119

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_152599, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_152599, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-800, gnl|bosTau2|chr19 (21100776-21099971)
               

               
               1-800, gnl|Hg17|chr17 (8641948-8641159)
               

               
               1-800, gnl|Mm7|chr11 (68639105-68640519)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-800, gnl|bosTau2|chr19 (21100776-21099971)
               

               
               1-800, gnl|Hg17|chr17 (8641948-8641159)
               

               
               1-800, gnl|Mm7|chr11 (68639105-68640519)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nco (0.161734)
               

               
               jej (0.0989218)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)
               

               
               jej (0.0989218)

	1-800, gnl\|bosTau2\|chr19 (21100776-21099971)
	1-800, gnl\|Hg17\|chr17 (8641948-8641159)
	1-800, gnl\|Mm7\|chr11 (68639105-68640519)