Non-Coding RNA Search

Ss1.1-Pig4-TMW8023I14.3.5

Sequence:


               
               CTGAACCTGTGTGCAGATAAAGTGTCTTCCGTCCGCTGGATTTCCTACAAGCTGGTTAGC
GAGATGGTGCGCAAGCTGCACCAGGCCGCGCCACCCTCCTTCGGGGTGGACCTCATCCGC
GAGCTGGTGGAGAGCTTCGGCCGCTGCCCGCGCTGGTCAGGGCGCCAGGCCTTTGTTTTC
GTCTGCCAGACTGTCATTGAAGATGACTGCCTTCCCATGGACCAGTTTGCTCTGCACCTG
ATGCCGCACCTGCTCACTTTGGCCAACGACAGGGTGCCAAATGTTCGTGTGCTGCTTGCA
AAGACCTTAAGACAGACTCTACTAGAAAAAGAATGTTTCCTCACCTCTGCCAGCTGCCAC
CAGGAGGCCGTGGAACAGACCATCATGGCTCTTCAGATGGATCGTGACAGTGATGTCAAG
TACTTCGCCAGCATCCACCCAGCCAGCACCAAGGTCTCTGAAGACGCCCTGAGCACGGCT
TCCTCGACCTACTAGCCGGCCTGACCAGGTTCCCTGCTTCCAGGGGGCCGAGGCCCGGCA
CACGCCCCACGTGGCCCGGGACAGCCAGGGGGGGCACCGCCCTCCCTCGCAGACTTAACT
GCAGGTGCAAGTTGCCTACACCGATACCAGGGATTTTCAGAGTCAAGAGAAAGTACAGTA
AACACTCTTATCTTACCTTGACTCGAAGGGAAAGTCTTTCTCAGAGGATTGTAATTGTCA
CCGAAGCCTTAAATCCTTCCGTCTTCCTGACTGAATGAAACTTGAATTGGCCGAGCGTTT
TCCTTGTGGAGGACGAGACGCCCCGAGGCCCGCATTGCTTTCTGCCGGTTCCCTGGAACC
ACCGAGTTGGAAGCGCGGCTGTGAGGCGGCTGCGAGGAGAGGGACGGGAGAGACCTCCAT
CCAGTGTTAGCGCTCGCTCCTTCCACGCAGGCCGGGACCTGCGGGCTCTGCAGCCAGCTG
CCGGTCCAGCCCGCCGTGTGAATAGTGCCGACGTGTGTACGCGGGAAAGGAGATATTTTT
TGGATTTCTCCTAAGGGCTTGATGCTAACACTAAGTAGAATCTGATTTTAACTCTTAAAT
GCAGCACATTGCTGCCCACATTTACGGAGCGTTTGCTGAGTCTTTGTGTCCTGATTCTTT
TTCATGCTGGTCATGACCCGAAGGAAATTTATGAGCACGTGTTCTGTACGGCAGGCGTTT
TTAACTTGATCATGATCGGCTCTGAGGTGCAACTTCGTCTCCCATGCTGTACATACCTGG
GACCACTCTGGGGAGGGCCGCAGCCTTTAATCATGCTGTTCAGCTGCTGTGCACAAGTTC
TCTCGTCCAAATAAAATTTATTACTAAGATCTATACAGAGAGAGAGAGAGAAACTTTCAA
CTGTTTTCTAGATATCTGCCAATAAATGCAATTGGTGACCTGTATTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGAACCTGTGTGCAGATAAAGTGTCTTCCGTCCGCTGGATTTCCTACAAGCTGGTTAGC
GAGATGGTGCGCAAGCTGCACCAGGCCGCGCCACCCTCCTTCGGGGTGGACCTCATCCGC
GAGCTGGTGGAGAGCTTCGGCCGCTGCCCGCGCTGGTCAGGGCGCCAGGCCTTTGTTTTC
GTCTGCCAGACTGTCATTGAAGATGACTGCCTTCCCATGGACCAGTTTGCTCTGCACCTG
ATGCCGCACCTGCTCACTTTGGCCAACGACAGGGTGCCAAATGTTCGTGTGCTGCTTGCA
AAGACCTTAAGACAGACTCTACTAGAAAAAGAATGTTTCCTCACCTCTGCCAGCTGCCAC
CAGGAGGCCGTGGAACAGACCATCATGGCTCTTCAGATGGATCGTGACAGTGATGTCAAG
TACTTCGCCAGCATCCACCCAGCCAGCACCAAGGTCTCTGAAGACGCCCTGAGCACGGCT
TCCTCGACCTACTAGCCGGCCTGACCAGGTTCCCTGCTTCCAGGGGGCCGAGGCCCGGCA
CACGCCCCACGTGGCCCGGGACAGCCAGGGGGGGCACCGCCCTCCCTCGCAGACTTAACT
GCAGGTGCAAGTTGCCTACACCGATACCAGGGATTTTCAGAGTCAAGAGAAAGTACAGTA
AACACTCTTATCTTACCTTGACTCGAAGGGAAAGTCTTTCTCAGAGGATTGTAATTGTCA
CCGAAGCCTTAAATCCTTCCGTCTTCCTGACTGAATGAAACTTGAATTGGCCGAGCGTTT
TCCTTGTGGAGGACGAGACGCCCCGAGGCCCGCATTGCTTTCTGCCGGTTCCCTGGAACC
ACCGAGTTGGAAGCGCGGCTGTGAGGCGGCTGCGAGGAGAGGGACGGGAGAGACCTCCAT
CCAGTGTTAGCGCTCGCTCCTTCCACGCAGGCCGGGACCTGCGGGCTCTGCAGCCAGCTG
CCGGTCCAGCCCGCCGTGTGAATAGTGCCGACGTGTGTACGCGGGAAAGGAGATATTTTT
TGGATTTCTCCTAAGGGCTTGATGCTAACACTAAGTAGAATCTGATTTTAACTCTTAAAT
GCAGCACATTGCTGCCCACATTTACGGAGCGTTTGCTGAGTCTTTGTGTCCTGATTCTTT
TTCATGCTGGTCATGACCCGAAGGAAATTTATGAGCACGTGTTCTGTACGGCAGGCGTTT
TTAACTTGATCATGATCGGCTCTGAGGTGCAACTTCGTCTCCCATGCTGTACATACCTGG
GACCACTCTGGGGAGGGCCGCAGCCTTTAATCATGCTGTTCAGCTGCTGTGCACAAGTTC
TCTCGTCCAAATAAAATTTATTACTAAGATCTATACAGAGAGAGAGAGAGAAACTTTCAA
CTGTTTTCTAGATATCTGCCAATAAATGCAATTGGTGACCTGTATTAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|1710229|gb|AAB50211.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|1710229|gb|AAB50211.1|

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               54-189, gnl|bosTau2|chr24 (31748137-31748272)
               

               
               54-189, gnl|Hg17|chr18 (9540185-9540050)
               

               
               54-189, gnl|Mm7|chr17 (64055422-64055557)
               


               
               337-859, gnl|bosTau2|chr24 (31749455-31749976)
               

               
               337-859, gnl|Hg17|chr18 (9537945-9537395)
               

               
               337-859, gnl|Mm7|chr17 (64058395-64058916)
               


               
               913-1428, gnl|bosTau2|chr24 (31750005-31750496)
               

               
               913-1428, gnl|Hg17|chr18 (9537345-9536838)
               

               
               913-1428, gnl|Mm7|chr17 (64058962-64059449)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               54-189, gnl|bosTau2|chr24 (31748137-31748272)
               

               
               54-189, gnl|Hg17|chr18 (9540185-9540050)
               

               
               54-189, gnl|Mm7|chr17 (64055422-64055557)
               


               
               337-859, gnl|bosTau2|chr24 (31749455-31749976)
               

               
               337-859, gnl|Hg17|chr18 (9537945-9537395)
               

               
               337-859, gnl|Mm7|chr17 (64058395-64058916)
               


               
               913-1428, gnl|bosTau2|chr24 (31750005-31750496)
               

               
               913-1428, gnl|Hg17|chr18 (9537345-9536838)
               

               
               913-1428, gnl|Mm7|chr17 (64058962-64059449)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               jej (0.494609)
               

               
               tes (0.207814)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               fat (0.147427)
               

               
               csk (0.140746)
               

               
               ova (0.129132)
               

               
               eep (0.122564)
               

               
               eje (0.0988338)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.494609)
               

               
               tes (0.207814)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               fat (0.147427)
               

               
               csk (0.140746)
               

               
               ova (0.129132)
               

               
               eep (0.122564)
               

               
               eje (0.0988338)

	54-189, gnl\|bosTau2\|chr24 (31748137-31748272)
	54-189, gnl\|Hg17\|chr18 (9540185-9540050)
	54-189, gnl\|Mm7\|chr17 (64055422-64055557)

	337-859, gnl\|bosTau2\|chr24 (31749455-31749976)
	337-859, gnl\|Hg17\|chr18 (9537945-9537395)
	337-859, gnl\|Mm7\|chr17 (64058395-64058916)

	913-1428, gnl\|bosTau2\|chr24 (31750005-31750496)
	913-1428, gnl\|Hg17\|chr18 (9537345-9536838)
	913-1428, gnl\|Mm7\|chr17 (64058962-64059449)

	jej (0.494609)
	tes (0.207814)
	csp (0.161186)
	cag (0.151194)
	fat (0.147427)
	csk (0.140746)
	ova (0.129132)
	eep (0.122564)
	eje (0.0988338)