Non-Coding RNA Search

Ss1.1-Pig4-TMW8023I22.5

Sequence:


               
               TGAGATGCCACCAGGTCCAGAGGCCCTGTGGCCCTGCCAGGGCCTGGGAACAGCCCAGGA
AGAAGAACGATTTCTGTGCTGCCCAACCAGGGCACCAGTGCCACCTGGCTGCCCTCTGGA
GGAAGTGCGGGCCACCAGGGCCAGCTCCCCCAGTGCCCCCCAGGACACTCAGGAGTCTAG
CGCCACAGCCACTGAGGCTGCAGGACAGGGATCTCGCCCAGGAGCCTGAGCTCAGAAGGA
ACTCTTACGTGGAAATGGGAACTGCATGGAGACTCCAAACTCTGACTCCCTACAGAAAAA
AGATTTTTTTAGCTTTGACAAACACACTAAAGTGGTAATAAAGAGAGCCCTGCTTCTCAA
CCCAAAATGTGAGCCGCCTGTGGCAGCCCCCTCCCCCCATTAACAAACCAACAAACAAAA
TTCTGAGTCCTTTGCCTCTTTTGATAACATGTTATCCTTCTGTATTGTAAATGTGTGTGC
TTGGGGTTCTGAGGTGTGTGGGATTGAGTTCTCTGCTTTGTTTTTTAAGATATTATATGT
AAATGTAAAAAGTTATTTAAATATATATTTTAAAGAACCCTTAATTGCCAACTTCTGCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAGATGCCACCAGGTCCAGAGGCCCTGTGGCCCTGCCAGGGCCTGGGAACAGCCCAGGA
AGAAGAACGATTTCTGTGCTGCCCAACCAGGGCACCAGTGCCACCTGGCTGCCCTCTGGA
GGAAGTGCGGGCCACCAGGGCCAGCTCCCCCAGTGCCCCCCAGGACACTCAGGAGTCTAG
CGCCACAGCCACTGAGGCTGCAGGACAGGGATCTCGCCCAGGAGCCTGAGCTCAGAAGGA
ACTCTTACGTGGAAATGGGAACTGCATGGAGACTCCAAACTCTGACTCCCTACAGAAAAA
AGATTTTTTTAGCTTTGACAAACACACTAAAGTGGTAATAAAGAGAGCCCTGCTTCTCAA
CCCAAAATGTGAGCCGCCTGTGGCAGCCCCCTCCCCCCATTAACAAACCAACAAACAAAA
TTCTGAGTCCTTTGCCTCTTTTGATAACATGTTATCCTTCTGTATTGTAAATGTGTGTGC
TTGGGGTTCTGAGGTGTGTGGGATTGAGTTCTCTGCTTTGTTTTTTAAGATATTATATGT
AAATGTAAAAAGTTATTTAAATATATATTTTAAAGAACCCTTAATTGCCAACTTCTGCTG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               4-122, - strand, RNAz p=0.970778
               

               
               481-593, + strand, RNAz p=0.8731

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               4-122, - strand, RNAz p=0.970778
               

               
               481-593, + strand, RNAz p=0.8731

Homologous human UTR: 2 entry(ies)

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Homologous human UTR: 2 entry(ies)

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               3' of AB051436, +
               

               
               5' of AB051436, +

Homologous human UTR: 2 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AB051436, +
               

               
               5' of AB051436, +

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               4-204, gnl|bosTau2|chr17 (41187373-41187570)
               

               
               4-204, gnl|Hg17|chr22 (27771294-27771491)
               

               
               4-204, gnl|Mm7|chr11 (5233001-5232810)
               


               
               296-600, gnl|bosTau2|chr17 (41188747-41189065)
               

               
               296-600, gnl|canFam2|chr26 (25424251-25424719)
               

               
               296-600, gnl|dasNov1|scaffold_20844 (10601-11047)
               

               
               296-600, gnl|echTel1|scaffold_317954 (55810-55329)
               

               
               296-600, gnl|galGal2|chr15 (7748626-7749016)
               

               
               296-600, gnl|hg17|chr22 (27774101-27774558)
               

               
               296-600, gnl|Hg17|chr22 (27774241-27774547)
               

               
               296-600, gnl|loxAfr1|scaffold_6926 (27083-27545)
               

               
               296-600, gnl|mm7|chr11 (5231788-5231308)
               

               
               296-600, gnl|Mm7|chr11 (5231602-5231312)
               

               
               296-600, gnl|monDom2|scaffold_89 (2907694-2908115)
               

               
               296-600, gnl|panTro1|chr23 (27875030-27875488)
               

               
               296-600, gnl|rheMac2|chr10 (72882741-72883201)
               

               
               296-600, gnl|rn3|chr14 (85946451-85945965)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-204, gnl|bosTau2|chr17 (41187373-41187570)
               

               
               4-204, gnl|Hg17|chr22 (27771294-27771491)
               

               
               4-204, gnl|Mm7|chr11 (5233001-5232810)
               


               
               296-600, gnl|bosTau2|chr17 (41188747-41189065)
               

               
               296-600, gnl|canFam2|chr26 (25424251-25424719)
               

               
               296-600, gnl|dasNov1|scaffold_20844 (10601-11047)
               

               
               296-600, gnl|echTel1|scaffold_317954 (55810-55329)
               

               
               296-600, gnl|galGal2|chr15 (7748626-7749016)
               

               
               296-600, gnl|hg17|chr22 (27774101-27774558)
               

               
               296-600, gnl|Hg17|chr22 (27774241-27774547)
               

               
               296-600, gnl|loxAfr1|scaffold_6926 (27083-27545)
               

               
               296-600, gnl|mm7|chr11 (5231788-5231308)
               

               
               296-600, gnl|Mm7|chr11 (5231602-5231312)
               

               
               296-600, gnl|monDom2|scaffold_89 (2907694-2908115)
               

               
               296-600, gnl|panTro1|chr23 (27875030-27875488)
               

               
               296-600, gnl|rheMac2|chr10 (72882741-72883201)
               

               
               296-600, gnl|rn3|chr14 (85946451-85945965)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               sto (0.179824)
               

               
               cki (0.165235)
               

               
               liv (0.146284)
               

               
               ova (0.129132)
               

               
               sug (0.127291)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sto (0.179824)
               

               
               cki (0.165235)
               

               
               liv (0.146284)
               

               
               ova (0.129132)
               

               
               sug (0.127291)

	4-122, - strand, RNAz p=0.970778
	481-593, + strand, RNAz p=0.8731

	4-204, gnl\|bosTau2\|chr17 (41187373-41187570)
	4-204, gnl\|Hg17\|chr22 (27771294-27771491)
	4-204, gnl\|Mm7\|chr11 (5233001-5232810)

	296-600, gnl\|bosTau2\|chr17 (41188747-41189065)
	296-600, gnl\|canFam2\|chr26 (25424251-25424719)
	296-600, gnl\|dasNov1\|scaffold_20844 (10601-11047)
	296-600, gnl\|echTel1\|scaffold_317954 (55810-55329)
	296-600, gnl\|galGal2\|chr15 (7748626-7749016)
	296-600, gnl\|hg17\|chr22 (27774101-27774558)
	296-600, gnl\|Hg17\|chr22 (27774241-27774547)
	296-600, gnl\|loxAfr1\|scaffold_6926 (27083-27545)
	296-600, gnl\|mm7\|chr11 (5231788-5231308)
	296-600, gnl\|Mm7\|chr11 (5231602-5231312)
	296-600, gnl\|monDom2\|scaffold_89 (2907694-2908115)
	296-600, gnl\|panTro1\|chr23 (27875030-27875488)
	296-600, gnl\|rheMac2\|chr10 (72882741-72883201)
	296-600, gnl\|rn3\|chr14 (85946451-85945965)

	sto (0.179824)
	cki (0.165235)
	liv (0.146284)
	ova (0.129132)
	sug (0.127291)