Ss1.1-Pig4-TMW8023I24.3
|
AAGAGCCGAGGCCCGGCGGCCGCCGAGTCCGCGTCCTCTTTGCACCAGCTTGTTTACAAC
CATGCCGCTCTACGAGGGCCTGGGGAGCGGCGGGGAGAAAACGGCGGTCGTGATAGACCT
GGGAGAGGCTTTTACCAAGTGTGGATTTGCTGGAGAAACTGGTCCAAGATGTATAATTCC
TAGTGTAATAAAAAAAGCCGGCATGCCTAAGCCTATCAAAGTTGTACAATATAATATCAA
TACAGAAGAATTATATTCCTACCTAAAGGAATTCATCCACATACTATATTTCAGGCATCT
ATTGGTGAATCCCAGAGACCGAAGAGTTGTGGTTATTGAGTCTGTATTATGCCCTTCCCA
CTTCAGAGAGACGCTTACTCGTGTTCTTTTCAAGTATTTTGAGGTTCCATCTGTTTTGCT
TGCTCCAAGTCATCTAATGGCTCTTCTTACACTTGGGATAAATTCTGCCATGGTCCTGGA
TTGTGGATATAGGGAAAGCCTGGTGTTACCTATATATGAAGGAATCCCAGTACTAAATTG
TTGGGGAGCACTCCCCCTAGGAGGAAAGGCTCTTCACAAGGAGTTGGAAACTCAACTATT
GGAACAATGTACTGTTGACACAGGTGCTGCTAAAGAACAGAGCCTTCCGTCTGTGATGGG
TTCAATTCCAGAAGGTGTCTTAGAGGACATTAAAGTGCGTACTTGCTTTGTTAGTGATCT
GACGCGTGGACTAAAAATCCAAGCAGCAAAATTTAATATTGATGGGAATACTGAGCGTCC
CTCACCACCCCCAAATGTTGACTACCCGTTAGATGGAGAAAAGATTTTACATGTCCTTGG
ATCAATCAGAGATTCGGTTGTGGAAATTCTTTTTGAACAAGATAATGAAGAGAAATCAGT
GGCCACTTTAATATTGGATTCCCTTATGCAGTGCCCAATAGATACCAGGAAGCAACTAGC
AGAGAATTTGGTCATCATAGGTGGCACATCTATGTTGCCAGGATTTCTCCACAGATTACT
TGCAGAAATAAGGTATTTGGTAGAAAAACCAAAGTATAAAAAAACACTTGGCACCAAGAC
CTTCCGAATTCATACTCCGCCTGCAAAGGCTAATTGTGTAGCCTGGTTGGGAGGGGCTAT
TTTTGGAGCACTACAAGACATACTTGGGAGCCGTTCAGTCTCAAAGGAATATTATAACCA
GACAGGCCGTATACCTGATTGGTGTTCTCTTAATAACCCACCTTTGGAAATGGTGTTTGA
TGTCGGAAAATCTCAGCCACCTCTGATGAAAAGAGCATTTTCCACTGAGAAATGAAAGTT
TGCTTAAAATTCGACTTTGCTTGATTGCAAATATCTAATCAATTACAAGCAAATTGTGCA
AAGTGTGTAGGATGCTGTTAAAGATGACTTTATTAGAAGTGAAGGCATTTCTGTAATTAT
TCTTCACATTAATATTTAATTATTTTGACTGTAGTTTCTCTTGTGTAGTGATAGAATGGT
AGCTAATGCTTATGAAGTTAATTGCATTTATATCAATAAAATACAGTAAAGCAGTTTAAT
TTTGGAAGTTTGTTAACATCGTTCATTTTTCAAAGAGAATAAAAACATTGTCACTCCACA
GTTCCTATAATCTATTCTGGGCATTGGAGACACCGTTAATTTCATTATTTTCAGCAGTTA
TTTCATTGAGTAATGTTATCATTTTCAGTTATTTTAAGTATTAACATGGGTTTATTTCTT
CAGATCCTTTTGTTTTGATATTTGTGCCCATGTTATAATAATGCTACTTTTACAGAAATA
TATTTGACTCTTGGATTGAGAATGTTGGGTAGCATATTTAAGCATTTGGTAAGCAAAATA
TGAAAATGTCACTTTTTAATTTTACAGTTAATGAATTTCTAAGAAAAATGATATTTCATT
TTTATGCAAGGATGTTTCATTTTATGCACTTTTATGCAATTACTTTATAAACATGTATTC
ATAATATCTTTTTTGTGCTTTGTATCTTCTCAAGGCAAGGGTTCTTTGAAAGATGTACTC
AGTCATTGTTTAATTTTGTTTTTATTTTTTAATGAACTACCTCTTACT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AAGAGCCGAGGCCCGGCGGCCGCCGAGTCCGCGTCCTCTTTGCACCAGCTTGTTTACAAC
CATGCCGCTCTACGAGGGCCTGGGGAGCGGCGGGGAGAAAACGGCGGTCGTGATAGACCT
GGGAGAGGCTTTTACCAAGTGTGGATTTGCTGGAGAAACTGGTCCAAGATGTATAATTCC
TAGTGTAATAAAAAAAGCCGGCATGCCTAAGCCTATCAAAGTTGTACAATATAATATCAA
TACAGAAGAATTATATTCCTACCTAAAGGAATTCATCCACATACTATATTTCAGGCATCT
ATTGGTGAATCCCAGAGACCGAAGAGTTGTGGTTATTGAGTCTGTATTATGCCCTTCCCA
CTTCAGAGAGACGCTTACTCGTGTTCTTTTCAAGTATTTTGAGGTTCCATCTGTTTTGCT
TGCTCCAAGTCATCTAATGGCTCTTCTTACACTTGGGATAAATTCTGCCATGGTCCTGGA
TTGTGGATATAGGGAAAGCCTGGTGTTACCTATATATGAAGGAATCCCAGTACTAAATTG
TTGGGGAGCACTCCCCCTAGGAGGAAAGGCTCTTCACAAGGAGTTGGAAACTCAACTATT
GGAACAATGTACTGTTGACACAGGTGCTGCTAAAGAACAGAGCCTTCCGTCTGTGATGGG
TTCAATTCCAGAAGGTGTCTTAGAGGACATTAAAGTGCGTACTTGCTTTGTTAGTGATCT
GACGCGTGGACTAAAAATCCAAGCAGCAAAATTTAATATTGATGGGAATACTGAGCGTCC
CTCACCACCCCCAAATGTTGACTACCCGTTAGATGGAGAAAAGATTTTACATGTCCTTGG
ATCAATCAGAGATTCGGTTGTGGAAATTCTTTTTGAACAAGATAATGAAGAGAAATCAGT
GGCCACTTTAATATTGGATTCCCTTATGCAGTGCCCAATAGATACCAGGAAGCAACTAGC
AGAGAATTTGGTCATCATAGGTGGCACATCTATGTTGCCAGGATTTCTCCACAGATTACT
TGCAGAAATAAGGTATTTGGTAGAAAAACCAAAGTATAAAAAAACACTTGGCACCAAGAC
CTTCCGAATTCATACTCCGCCTGCAAAGGCTAATTGTGTAGCCTGGTTGGGAGGGGCTAT
TTTTGGAGCACTACAAGACATACTTGGGAGCCGTTCAGTCTCAAAGGAATATTATAACCA
GACAGGCCGTATACCTGATTGGTGTTCTCTTAATAACCCACCTTTGGAAATGGTGTTTGA
TGTCGGAAAATCTCAGCCACCTCTGATGAAAAGAGCATTTTCCACTGAGAAATGAAAGTT
TGCTTAAAATTCGACTTTGCTTGATTGCAAATATCTAATCAATTACAAGCAAATTGTGCA
AAGTGTGTAGGATGCTGTTAAAGATGACTTTATTAGAAGTGAAGGCATTTCTGTAATTAT
TCTTCACATTAATATTTAATTATTTTGACTGTAGTTTCTCTTGTGTAGTGATAGAATGGT
AGCTAATGCTTATGAAGTTAATTGCATTTATATCAATAAAATACAGTAAAGCAGTTTAAT
TTTGGAAGTTTGTTAACATCGTTCATTTTTCAAAGAGAATAAAAACATTGTCACTCCACA
GTTCCTATAATCTATTCTGGGCATTGGAGACACCGTTAATTTCATTATTTTCAGCAGTTA
TTTCATTGAGTAATGTTATCATTTTCAGTTATTTTAAGTATTAACATGGGTTTATTTCTT
CAGATCCTTTTGTTTTGATATTTGTGCCCATGTTATAATAATGCTACTTTTACAGAAATA
TATTTGACTCTTGGATTGAGAATGTTGGGTAGCATATTTAAGCATTTGGTAAGCAAAATA
TGAAAATGTCACTTTTTAATTTTACAGTTAATGAATTTCTAAGAAAAATGATATTTCATT
TTTATGCAAGGATGTTTCATTTTATGCACTTTTATGCAATTACTTTATAAACATGTATTC
ATAATATCTTTTTTGTGCTTTGTATCTTCTCAAGGCAAGGGTTCTTTGAAAGATGTACTC
AGTCATTGTTTAATTTTGTTTTTATTTTTTAATGAACTACCTCTTACT
|
|
gi|61859714|ref|XP_588348.1| |
Protein identifier
|
gi|61859714|ref|XP_588348.1| |
|
286-417, gnl|bosTau2|chr10 (48135121-48134991) |
|
286-417, gnl|canFam2|chr8 (36615971-36616092) |
|
286-417, gnl|danRer3|chrNA (102904224-102904105) |
|
286-417, gnl|dasNov1|scaffold_71375 (12702-12822) |
|
286-417, gnl|echTel1|scaffold_74211 (851-741) |
|
286-417, gnl|fr1|chrUn (51780080-51780201) |
|
286-417, gnl|galGal2|chr5 (52035321-52035194) |
|
286-417, gnl|hg17|chr14 (57745463-57745597) |
|
286-417, gnl|Hg17|chr14 (57745461-57745671) |
|
286-417, gnl|loxAfr1|scaffold_147 (215562-215430) |
|
286-417, gnl|mm7|chr12 (68887241-68887371) |
|
286-417, gnl|Mm7|chr12 (68887239-68887368) |
|
286-417, gnl|monDom2|scaffold_8 (70215356-70215493) |
|
286-417, gnl|oryCun1|scaffold_149709 (3537-3671) |
|
286-417, gnl|panTro1|chr15 (57303593-57303727) |
|
286-417, gnl|rn3|chr6 (93063651-93063780) |
|
286-417, gnl|tetNig1|chr14 (7148465-7148583) |
|
286-417, gnl|xenTro1|scaffold_33 (1319399-1319269) |
| |
|
1132-1834, gnl|bosTau2|chr10 (48115419-48114725) |
|
1132-1834, gnl|Hg17|chr14 (57770839-57771859) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
286-417, gnl|bosTau2|chr10 (48135121-48134991) |
|
286-417, gnl|canFam2|chr8 (36615971-36616092) |
|
286-417, gnl|danRer3|chrNA (102904224-102904105) |
|
286-417, gnl|dasNov1|scaffold_71375 (12702-12822) |
|
286-417, gnl|echTel1|scaffold_74211 (851-741) |
|
286-417, gnl|fr1|chrUn (51780080-51780201) |
|
286-417, gnl|galGal2|chr5 (52035321-52035194) |
|
286-417, gnl|hg17|chr14 (57745463-57745597) |
|
286-417, gnl|Hg17|chr14 (57745461-57745671) |
|
286-417, gnl|loxAfr1|scaffold_147 (215562-215430) |
|
286-417, gnl|mm7|chr12 (68887241-68887371) |
|
286-417, gnl|Mm7|chr12 (68887239-68887368) |
|
286-417, gnl|monDom2|scaffold_8 (70215356-70215493) |
|
286-417, gnl|oryCun1|scaffold_149709 (3537-3671) |
|
286-417, gnl|panTro1|chr15 (57303593-57303727) |
|
286-417, gnl|rn3|chr6 (93063651-93063780) |
|
286-417, gnl|tetNig1|chr14 (7148465-7148583) |
|
286-417, gnl|xenTro1|scaffold_33 (1319399-1319269) |
| |
|
1132-1834, gnl|bosTau2|chr10 (48115419-48114725) |
|
1132-1834, gnl|Hg17|chr14 (57770839-57771859) |
|
ret (0.7724) |
|
liv (0.731422) |
|
vin (0.665115) |
|
sug (0.636456) |
|
hea (0.613497) |
|
rec (0.519211) |
|
bla (0.497389) |
|
ldo (0.485013) |
|
mgp (0.461361) |
|
ste (0.405625) |
|
aor (0.390549) |
|
kid (0.389206) |
|
elu (0.385356) |
|
tra (0.369276) |
|
mgm (0.360685) |
|
gul (0.355177) |
|
duo (0.345602) |
|
eye (0.341006) |
|
fco (0.314416) |
|
tbr (0.308356) |
|
sme (0.305437) |
|
bfe (0.299715) |
|
fat (0.294855) |
|
lin (0.291206) |
|
spl (0.286369) |
|
ssp (0.271039) |
|
lyg (0.266205) |
|
thg (0.253582) |
|
cbe (0.239234) |
|
pgl (0.236967) |
|
ece (0.229305) |
|
cty (0.20816) |
|
tes (0.207814) |
|
fcc (0.197785) |
|
col (0.195008) |
|
fty (0.17584) |
|
fbs (0.175346) |
|
cki (0.165235) |
|
nco (0.161734) |
|
mga (0.160205) |
|
isp (0.150376) |
|
ski (0.146735) |
|
hyp (0.142837) |
|
pty (0.142714) |
|
lnt (0.142308) |
|
nmm (0.132802) |
|
ova (0.129132) |
|
eru (0.120048) |
|
ebs (0.118301) |
|
spc (0.113366) |
|
nbm (0.0993246) |
|
ret (0.7724) |
|
liv (0.731422) |
|
vin (0.665115) |
|
sug (0.636456) |
|
hea (0.613497) |
|
rec (0.519211) |
|
bla (0.497389) |
|
ldo (0.485013) |
|
mgp (0.461361) |
|
ste (0.405625) |
|
aor (0.390549) |
|
kid (0.389206) |
|
elu (0.385356) |
|
tra (0.369276) |
|
mgm (0.360685) |
|
gul (0.355177) |
|
duo (0.345602) |
|
eye (0.341006) |
|
fco (0.314416) |
|
tbr (0.308356) |
|
sme (0.305437) |
|
bfe (0.299715) |
|
fat (0.294855) |
|
lin (0.291206) |
|
spl (0.286369) |
|
ssp (0.271039) |
|
lyg (0.266205) |
|
thg (0.253582) |
|
cbe (0.239234) |
|
pgl (0.236967) |
|
ece (0.229305) |
|
cty (0.20816) |
|
tes (0.207814) |
|
fcc (0.197785) |
|
col (0.195008) |
|
fty (0.17584) |
|
fbs (0.175346) |
|
cki (0.165235) |
|
nco (0.161734) |
|
mga (0.160205) |
|
isp (0.150376) |
|
ski (0.146735) |
|
hyp (0.142837) |
|
pty (0.142714) |
|
lnt (0.142308) |
|
nmm (0.132802) |
|
ova (0.129132) |
|
eru (0.120048) |
|
ebs (0.118301) |
|
spc (0.113366) |
|
nbm (0.0993246) |
