Ss1.1-Pig4-TMW8023J04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGAAAAACAAAAGATTGCATTCACAGAGTGGATTGAACCACCTAAACGAGAAAGAAAAG CCAACTATGCTGTTGATGCCTATTTCAGGGAAGCTCTTCGCGTCAGTGAACCTAAAGCAC CCAAAGCTCCTCGACCTCCAAAACAACCCAATGTTCAGGATTTCCAGTTCTTTCCTCCAC GTCTATTTGAATTATTAGAAAAAGAAATTCTATATTACAGAAAAACAATTGGGTACAAGG TGCCTCGAAATCCTGACCTACCAAATGCAGCACAGGCGCAAAAAGAAGAACAGCTCAAAA TTGATGAGGCTGAACCCCTTAACGATGAAGAGTTAGAGGAAAAAGAGAAACTTCTAACAC AGGGATTTACCAATTGGAATAAGAGAGATTTTAACCAGTTTATTAAAGCTAATGAGAAGT GGGGTCGCGATGATATTGAAAATATAGCAAGAGAAGTAGAAGGAAAAACTCCAGAAGAAG TCATTGAATATTCAGCTGTGTTCTGGGAAAGATGCAATGAGCTACAAGACATAGAGAAGA TTATGGCTCAAATTGAAAGGGGAGAGGCAAGAATTCAAAGAAGAATTAGTATCAAAAAAG CACTTGACACGAAGATTGGACGGTACAAAGCACCTTTTCATCAGCTGAGAATATCTTACG GTACTAACAAAGGGAAAAACTATACTGAAGAAGAGGATCGTTTTCTGATCTGTATGCTTC ATAAGCTTGGATTCGACAAAGAAAATGTTTATGATGAATTGCGGCAGTGTATCCGCAACT CTCCTCAGTTCAGATTTGACTGGTTTCTAAAGTCCAGAACTGCAATGGAGCTCCAGCGGA GGTGTAACACCTTAATTACCTTGATTGAAAGAGAAAACATGGAACTAGAAGAAAAGGAGA AGGCAGAGAAAAAGAAAAGAGGACCAAAACCTTCAACACAGAAACGTAAAATGGATGGAG CACCTGATGGCAGAGGAAGAAAAAAGAAGCTGAAACTATGAATACATATTTGTTTCATAA TCACTAACTTTAAACTAGTAGTTCTTTAATTTACGGGTCTTCATAAGATGTACTGTACAA TGCTCAGTCGTTATGTCATTCAAAGACATCAGGTTCATCTGTTTACCGAGCTAGAAACAT AGTATGTAGTTTCACTTTTTTAAATGCAACAGCTGTGCTGAAATTTTTTTATCATTAACA CTTGAAGTAATAAAATAGGCTTCATTTATTAATAAATGTTTCATTTGATTTATTTTTCTA TTATAGTTCCATTTGTGAAGATTGTGACTTTTTGTTTATCAGCTATAATTTCTACACTTG TAAGGCTTAAAAAAGAAGCAAACAAGTTTAAAAAATTGCAAATAACATTTGTCCCTTCAG TCTTCACTTAGCTGTGTAATTGTTTTAATTCACTTTGCCTTTGCAGAAATTTGGGTATCT CCTTTGTAGTGCTGTTGAGTCTCATCTGGGAAGATTATGTAAATTGCATTCTCCTTGCTT ATTATATGGGTAGAATGGGAAAAAAAAAAGGCAAGACAACTTCTCATTAAATTCTGTGCA TATTTGTGTTATGCTTTGTTTCTGTAGTTGGTTCTGAGGTGAATACGCTCTGTTCTGTTT GGAAGAATGGCCTTTTAGTTGTATAGCCAAAGACATTTAGTATTTTCTGGTTCCTTAAGG TGTTACTGTACCATTTTGTAAAAGGAATATTATTATTATTTTTTTTAATTGTTTGGTAAA TATTTTGACAAATTACCTTCTGAAGCAGCCACTACTTAGAAAGATAATGTCAAGACTAAG GTGATTTTTTCTTTTTTAAAAAGACCCAGCCAAAATAAGGTGTGAATTTGTCATACTGTT AAATTGAAATTGGTAACAAAATGTATCCCATTCCAGTTTACCTTTTTTGGGTTGTAGGGT AATTGAAAATTTTATTTTATTATATTTAAAATAATTTCTAAGTGTAAGCAGCAAGACTGA CTATAATTCCAGTTTTTATTTTCTATGGACAGACTTGATAAACTGGAGACCCTGAAGCAG GATGACCCAAATTGTAGTGTCAGGATTTTAGCTGTACCAGAGGCCTTTATGTGCTACACA TAATTTGTATAAAGTTTTATATGTGCAAATTGGGTACATAAACAGTTCTCCATTTTTCTA AGGGAATGCAATAAATGTAGCATCGTGAATAAATATAACTTTTATAAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGAAAAACAAAAGATTGCATTCACAGAGTGGATTGAACCACCTAAACGAGAAAGAAAAG CCAACTATGCTGTTGATGCCTATTTCAGGGAAGCTCTTCGCGTCAGTGAACCTAAAGCAC CCAAAGCTCCTCGACCTCCAAAACAACCCAATGTTCAGGATTTCCAGTTCTTTCCTCCAC GTCTATTTGAATTATTAGAAAAAGAAATTCTATATTACAGAAAAACAATTGGGTACAAGG TGCCTCGAAATCCTGACCTACCAAATGCAGCACAGGCGCAAAAAGAAGAACAGCTCAAAA TTGATGAGGCTGAACCCCTTAACGATGAAGAGTTAGAGGAAAAAGAGAAACTTCTAACAC AGGGATTTACCAATTGGAATAAGAGAGATTTTAACCAGTTTATTAAAGCTAATGAGAAGT GGGGTCGCGATGATATTGAAAATATAGCAAGAGAAGTAGAAGGAAAAACTCCAGAAGAAG TCATTGAATATTCAGCTGTGTTCTGGGAAAGATGCAATGAGCTACAAGACATAGAGAAGA TTATGGCTCAAATTGAAAGGGGAGAGGCAAGAATTCAAAGAAGAATTAGTATCAAAAAAG CACTTGACACGAAGATTGGACGGTACAAAGCACCTTTTCATCAGCTGAGAATATCTTACG GTACTAACAAAGGGAAAAACTATACTGAAGAAGAGGATCGTTTTCTGATCTGTATGCTTC ATAAGCTTGGATTCGACAAAGAAAATGTTTATGATGAATTGCGGCAGTGTATCCGCAACT CTCCTCAGTTCAGATTTGACTGGTTTCTAAAGTCCAGAACTGCAATGGAGCTCCAGCGGA GGTGTAACACCTTAATTACCTTGATTGAAAGAGAAAACATGGAACTAGAAGAAAAGGAGA AGGCAGAGAAAAAGAAAAGAGGACCAAAACCTTCAACACAGAAACGTAAAATGGATGGAG CACCTGATGGCAGAGGAAGAAAAAAGAAGCTGAAACTATGAATACATATTTGTTTCATAA TCACTAACTTTAAACTAGTAGTTCTTTAATTTACGGGTCTTCATAAGATGTACTGTACAA TGCTCAGTCGTTATGTCATTCAAAGACATCAGGTTCATCTGTTTACCGAGCTAGAAACAT AGTATGTAGTTTCACTTTTTTAAATGCAACAGCTGTGCTGAAATTTTTTTATCATTAACA CTTGAAGTAATAAAATAGGCTTCATTTATTAATAAATGTTTCATTTGATTTATTTTTCTA TTATAGTTCCATTTGTGAAGATTGTGACTTTTTGTTTATCAGCTATAATTTCTACACTTG TAAGGCTTAAAAAAGAAGCAAACAAGTTTAAAAAATTGCAAATAACATTTGTCCCTTCAG TCTTCACTTAGCTGTGTAATTGTTTTAATTCACTTTGCCTTTGCAGAAATTTGGGTATCT CCTTTGTAGTGCTGTTGAGTCTCATCTGGGAAGATTATGTAAATTGCATTCTCCTTGCTT ATTATATGGGTAGAATGGGAAAAAAAAAAGGCAAGACAACTTCTCATTAAATTCTGTGCA TATTTGTGTTATGCTTTGTTTCTGTAGTTGGTTCTGAGGTGAATACGCTCTGTTCTGTTT GGAAGAATGGCCTTTTAGTTGTATAGCCAAAGACATTTAGTATTTTCTGGTTCCTTAAGG TGTTACTGTACCATTTTGTAAAAGGAATATTATTATTATTTTTTTTAATTGTTTGGTAAA TATTTTGACAAATTACCTTCTGAAGCAGCCACTACTTAGAAAGATAATGTCAAGACTAAG GTGATTTTTTCTTTTTTAAAAAGACCCAGCCAAAATAAGGTGTGAATTTGTCATACTGTT AAATTGAAATTGGTAACAAAATGTATCCCATTCCAGTTTACCTTTTTTGGGTTGTAGGGT AATTGAAAATTTTATTTTATTATATTTAAAATAATTTCTAAGTGTAAGCAGCAAGACTGA CTATAATTCCAGTTTTTATTTTCTATGGACAGACTTGATAAACTGGAGACCCTGAAGCAG GATGACCCAAATTGTAGTGTCAGGATTTTAGCTGTACCAGAGGCCTTTATGTGCTACACA TAATTTGTATAAAGTTTTATATGTGCAAATTGGGTACATAAACAGTTCTCCATTTTTCTA AGGGAATGCAATAAATGTAGCATCGTGAATAAATATAACTTTTATAAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 1055-1173, - strand, RNAz p=0.57706 | |
| 1989-2108, - strand, RNAz p=0.642415 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1055-1173, - strand, RNAz p=0.57706 | |
| 1989-2108, - strand, RNAz p=0.642415 |
| Aligned organism(s): 50 entry(ies) | More info |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
| 13-124, gnl|bosTau2|chr17 (8973511-8973622) | |
| 13-124, gnl|Hg17|chr4 (144823493-144823604) | |
| 13-124, gnl|Mm7|chr8 (79249144-79249033) | |
| 126-241, gnl|bosTau2|chr17 (8973966-8974081) | |
| 126-241, gnl|canFam2|chr15 (45776459-45776586) | |
| 126-241, gnl|danRer3|chr5 (8458307-8458432) | |
| 126-241, gnl|dasNov1|scaffold_17140 (13956-13829) | |
| 126-241, gnl|echTel1|scaffold_276592 (46083-46210) | |
| 126-241, gnl|fr1|chrUn (164896162-164896038) | |
| 126-241, gnl|galGal2|chr4 (31110236-31110359) | |
| 126-241, gnl|hg17|chr4 (144824221-144824349) | |
| 126-241, gnl|Hg17|chr4 (144824228-144824343) | |
| 126-241, gnl|loxAfr1|scaffold_52557 (6215-6342) | |
| 126-241, gnl|mm7|chr8 (79248611-79248483) | |
| 126-241, gnl|Mm7|chr8 (79248602-79248487) | |
| 126-241, gnl|monDom2|scaffold_9 (11948870-11949003) | |
| 126-241, gnl|oryCun1|scaffold_207913 (22695-22568) | |
| 126-241, gnl|panTro1|chr3 (162127024-162127152) | |
| 126-241, gnl|rheMac2|chr5 (135962347-135962475) | |
| 126-241, gnl|rn3|chr19 (29152667-29152795) | |
| 126-241, gnl|tetNig1|chr18 (6789576-6789702) | |
| 126-241, gnl|xenTro1|scaffold_753 (200366-200488) | |
| 358-501, gnl|bosTau2|chrX (3789035-3788892) | |
| 358-501, gnl|Hg17|chrX (128328422-128328280) | |
| 358-501, gnl|Mm7|chrX (42918882-42918740) | |
| 361-495, gnl|bosTau2|chr17 (8975108-8975242) | |
| 361-495, gnl|Hg17|chr4 (144825532-144825666) | |
| 361-495, gnl|Mm7|chr8 (79244957-79244823) | |
| 613-828, gnl|bosTau2|chr17 (8976768-8976983) | |
| 613-828, gnl|canFam2|chr15 (45779315-45779543) | |
| 613-828, gnl|danRer3|chr5 (8461182-8461506) | |
| 613-828, gnl|dasNov1|scaffold_17140 (10329-10101) | |
| 613-828, gnl|echTel1|scaffold_276592 (49759-49985) | |
| 613-828, gnl|fr1|chrUn (164895333-164895105) | |
| 613-828, gnl|galGal2|chr4 (31113713-31113941) | |
| 613-828, gnl|hg17|chr4 (144826681-144826910) | |
| 613-828, gnl|Hg17|chr4 (144826684-144826899) | |
| 613-828, gnl|loxAfr1|scaffold_29027 (21567-21341) | |
| 613-828, gnl|mm7|chr8 (79244200-79243971) | |
| 613-828, gnl|Mm7|chr8 (79244195-79243980) | |
| 613-828, gnl|monDom2|scaffold_9 (11952505-11952734) | |
| 613-828, gnl|oryCun1|scaffold_207913 (19904-19660) | |
| 613-828, gnl|panTro1|chr3 (162129486-162129715) | |
| 613-828, gnl|rheMac2|chr5 (135964855-135965084) | |
| 613-828, gnl|rn3|chr19 (29155489-29155718) | |
| 613-828, gnl|tetNig1|chr18 (6790396-6790620) | |
| 613-828, gnl|xenTro1|scaffold_753 (202530-202759) | |
| 936-2208, gnl|bosTau2|chr17 (8979373-8980640) | |
| 936-2208, gnl|Hg17|chr4 (144831877-144833123) | |
| 936-2208, gnl|Mm7|chr8 (79240504-79239326) |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 13-124, gnl|bosTau2|chr17 (8973511-8973622) | |
| 13-124, gnl|Hg17|chr4 (144823493-144823604) | |
| 13-124, gnl|Mm7|chr8 (79249144-79249033) | |
| 126-241, gnl|bosTau2|chr17 (8973966-8974081) | |
| 126-241, gnl|canFam2|chr15 (45776459-45776586) | |
| 126-241, gnl|danRer3|chr5 (8458307-8458432) | |
| 126-241, gnl|dasNov1|scaffold_17140 (13956-13829) | |
| 126-241, gnl|echTel1|scaffold_276592 (46083-46210) | |
| 126-241, gnl|fr1|chrUn (164896162-164896038) | |
| 126-241, gnl|galGal2|chr4 (31110236-31110359) | |
| 126-241, gnl|hg17|chr4 (144824221-144824349) | |
| 126-241, gnl|Hg17|chr4 (144824228-144824343) | |
| 126-241, gnl|loxAfr1|scaffold_52557 (6215-6342) | |
| 126-241, gnl|mm7|chr8 (79248611-79248483) | |
| 126-241, gnl|Mm7|chr8 (79248602-79248487) | |
| 126-241, gnl|monDom2|scaffold_9 (11948870-11949003) | |
| 126-241, gnl|oryCun1|scaffold_207913 (22695-22568) | |
| 126-241, gnl|panTro1|chr3 (162127024-162127152) | |
| 126-241, gnl|rheMac2|chr5 (135962347-135962475) | |
| 126-241, gnl|rn3|chr19 (29152667-29152795) | |
| 126-241, gnl|tetNig1|chr18 (6789576-6789702) | |
| 126-241, gnl|xenTro1|scaffold_753 (200366-200488) | |
| 358-501, gnl|bosTau2|chrX (3789035-3788892) | |
| 358-501, gnl|Hg17|chrX (128328422-128328280) | |
| 358-501, gnl|Mm7|chrX (42918882-42918740) | |
| 361-495, gnl|bosTau2|chr17 (8975108-8975242) | |
| 361-495, gnl|Hg17|chr4 (144825532-144825666) | |
| 361-495, gnl|Mm7|chr8 (79244957-79244823) | |
| 613-828, gnl|bosTau2|chr17 (8976768-8976983) | |
| 613-828, gnl|canFam2|chr15 (45779315-45779543) | |
| 613-828, gnl|danRer3|chr5 (8461182-8461506) | |
| 613-828, gnl|dasNov1|scaffold_17140 (10329-10101) | |
| 613-828, gnl|echTel1|scaffold_276592 (49759-49985) | |
| 613-828, gnl|fr1|chrUn (164895333-164895105) | |
| 613-828, gnl|galGal2|chr4 (31113713-31113941) | |
| 613-828, gnl|hg17|chr4 (144826681-144826910) | |
| 613-828, gnl|Hg17|chr4 (144826684-144826899) | |
| 613-828, gnl|loxAfr1|scaffold_29027 (21567-21341) | |
| 613-828, gnl|mm7|chr8 (79244200-79243971) | |
| 613-828, gnl|Mm7|chr8 (79244195-79243980) | |
| 613-828, gnl|monDom2|scaffold_9 (11952505-11952734) | |
| 613-828, gnl|oryCun1|scaffold_207913 (19904-19660) | |
| 613-828, gnl|panTro1|chr3 (162129486-162129715) | |
| 613-828, gnl|rheMac2|chr5 (135964855-135965084) | |
| 613-828, gnl|rn3|chr19 (29155489-29155718) | |
| 613-828, gnl|tetNig1|chr18 (6790396-6790620) | |
| 613-828, gnl|xenTro1|scaffold_753 (202530-202759) | |
| 936-2208, gnl|bosTau2|chr17 (8979373-8980640) | |
| 936-2208, gnl|Hg17|chr4 (144831877-144833123) | |
| 936-2208, gnl|Mm7|chr8 (79240504-79239326) |
| Expressed library(ies): 29 entry(ies) | More info |
| Expressed library(ies): 29 entry(ies) | Help | Less info |
| thg (1.01433) | |
| ski (0.733676) | |
| fco (0.628832) | |
| fcc (0.593354) | |
| aor (0.585823) | |
| liv (0.585137) | |
| tra (0.492368) | |
| lin (0.436808) | |
| rec (0.346141) | |
| spc (0.340097) | |
| spl (0.286369) | |
| pla (0.267344) | |
| lyg (0.266205) | |
| kid (0.259471) | |
| sug (0.254582) | |
| mgp (0.230681) | |
| tes (0.207814) | |
| gul (0.177588) | |
| duo (0.172801) | |
| fhi (0.169578) | |
| cje (0.165235) | |
| lun (0.150489) | |
| bfe (0.149858) | |
| fat (0.147427) | |
| hyp (0.142837) | |
| ste (0.135208) | |
| ova (0.129132) | |
| ret (0.128733) | |
| nbm (0.0993246) |
| Expressed library(ies): 29 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| thg (1.01433) | |
| ski (0.733676) | |
| fco (0.628832) | |
| fcc (0.593354) | |
| aor (0.585823) | |
| liv (0.585137) | |
| tra (0.492368) | |
| lin (0.436808) | |
| rec (0.346141) | |
| spc (0.340097) | |
| spl (0.286369) | |
| pla (0.267344) | |
| lyg (0.266205) | |
| kid (0.259471) | |
| sug (0.254582) | |
| mgp (0.230681) | |
| tes (0.207814) | |
| gul (0.177588) | |
| duo (0.172801) | |
| fhi (0.169578) | |
| cje (0.165235) | |
| lun (0.150489) | |
| bfe (0.149858) | |
| fat (0.147427) | |
| hyp (0.142837) | |
| ste (0.135208) | |
| ova (0.129132) | |
| ret (0.128733) | |
| nbm (0.0993246) |