Non-Coding RNA Search

Ss1.1-Pig4-TMW8023J12.5

Sequence:


               
               AGTGAAAGGTCAAAGCCACTATGGCTGGTGGTAGCTGTCCCTGGCCGTGACCGGCAGAGG
AGGCAGAGGGGGATTGAAGAACCAGTATGGCAAAATGCTTGGTCAAGATCCAGACTCGGA
GGGGTCTCCGCCTACAGCTGGTGAACCACTGCAAAAGCGACGTGTTTGTCCGTCTGCTGA
GACATGGTTCCAAGATCACAGCCAGAAACACGGGTGTTCCATTGCCCAAAGAAGATAACA
TTTCTGCCCCCTTGATCTCCAGCTCACCAGTGAAGGAATCCCGCGAGTATGAAGAACCCT
CAAGTGAAGAGGAAGATAAAATAAAAGAGGAGCCCTTGACCATCTCCGAACTGGCATACA
ACCCAAGTGCCAGTCTGCTCCCTACCCCAGTTGATGATGATGAGATCGACATGCTCTTTG
ACTGTCCATCTCGGCTGGAGCTGGAAAGAGAAGACACAGATTCGTTTGAGGAACTGGAAG
CAGATGAAAACGCCTTTTTAATGGCCGAAGAAGAGGAGCTGAAGGAGGCTCGCCAGGCTT
TGTCATGGAGCTATGACATTCTGAGTGGCCATATTCGGGTGAACCCACTGGTCAAGAGTT
TTTCCCGGCTCCTTGTGGTGGGCCTGGGCCTGCTGCTCTTTGTATTTCCCCTGCTCCTCC
TCCTTTTGGAGTCAGGTATTGATCTCTCCTTCTTATGTGAAATCCGCCAGACGCCCGAGT
TTGAGCAGTTTCACTATGAGTACTTCCAGCCTGGCTCTGTGATGGGGTGGGTAAGTTGGG
GGAGCCCCACCCAGTGGGCTCAGCTGTCATCACTTCTGAGAGGATGAAAGAAGCCTCACT
TGGGCCACAGATCCCAGCTGTGTTCTTCAATTCATCAATAAAGCTGATCGGTCACAGGAC
CGTCAACAGGTGTTCCTCAGTCGTAACTGATTATTCACACCTTTAAGTTAGCTTTCCATC
ATTCACTGCGATTAAATGAGTTCAAATCAAATACAGTTATTTTAGTTACAGGTCAGGAAG
ACGGCCTCTAAATAACCAAAAATATGTTTATTTTTCTTATAGTACAGACATACTCTTTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTGAAAGGTCAAAGCCACTATGGCTGGTGGTAGCTGTCCCTGGCCGTGACCGGCAGAGG
AGGCAGAGGGGGATTGAAGAACCAGTATGGCAAAATGCTTGGTCAAGATCCAGACTCGGA
GGGGTCTCCGCCTACAGCTGGTGAACCACTGCAAAAGCGACGTGTTTGTCCGTCTGCTGA
GACATGGTTCCAAGATCACAGCCAGAAACACGGGTGTTCCATTGCCCAAAGAAGATAACA
TTTCTGCCCCCTTGATCTCCAGCTCACCAGTGAAGGAATCCCGCGAGTATGAAGAACCCT
CAAGTGAAGAGGAAGATAAAATAAAAGAGGAGCCCTTGACCATCTCCGAACTGGCATACA
ACCCAAGTGCCAGTCTGCTCCCTACCCCAGTTGATGATGATGAGATCGACATGCTCTTTG
ACTGTCCATCTCGGCTGGAGCTGGAAAGAGAAGACACAGATTCGTTTGAGGAACTGGAAG
CAGATGAAAACGCCTTTTTAATGGCCGAAGAAGAGGAGCTGAAGGAGGCTCGCCAGGCTT
TGTCATGGAGCTATGACATTCTGAGTGGCCATATTCGGGTGAACCCACTGGTCAAGAGTT
TTTCCCGGCTCCTTGTGGTGGGCCTGGGCCTGCTGCTCTTTGTATTTCCCCTGCTCCTCC
TCCTTTTGGAGTCAGGTATTGATCTCTCCTTCTTATGTGAAATCCGCCAGACGCCCGAGT
TTGAGCAGTTTCACTATGAGTACTTCCAGCCTGGCTCTGTGATGGGGTGGGTAAGTTGGG
GGAGCCCCACCCAGTGGGCTCAGCTGTCATCACTTCTGAGAGGATGAAAGAAGCCTCACT
TGGGCCACAGATCCCAGCTGTGTTCTTCAATTCATCAATAAAGCTGATCGGTCACAGGAC
CGTCAACAGGTGTTCCTCAGTCGTAACTGATTATTCACACCTTTAAGTTAGCTTTCCATC
ATTCACTGCGATTAAATGAGTTCAAATCAAATACAGTTATTTTAGTTACAGGTCAGGAAG
ACGGCCTCTAAATAACCAAAAATATGTTTATTTTTCTTATAGTACAGACATACTCTTTAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8IZ44_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8IZ44_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               649-770, + strand, RNAz p=0.901575

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               649-770, + strand, RNAz p=0.901575

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               210-770, gnl|bosTau2|chr8 (42169293-42169848)
               

               
               210-770, gnl|Hg17|chr9 (83092989-83092431)
               

               
               210-770, gnl|Mm7|chr4 (73591034-73591586)
               


               
               884-1080, gnl|bosTau2|chr8 (42169979-42170171)
               

               
               884-1080, gnl|Hg17|chr9 (83092315-83092118)
               

               
               884-1080, gnl|Mm7|chr4 (73591700-73591891)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               210-770, gnl|bosTau2|chr8 (42169293-42169848)
               

               
               210-770, gnl|Hg17|chr9 (83092989-83092431)
               

               
               210-770, gnl|Mm7|chr4 (73591034-73591586)
               


               
               884-1080, gnl|bosTau2|chr8 (42169979-42170171)
               

               
               884-1080, gnl|Hg17|chr9 (83092315-83092118)
               

               
               884-1080, gnl|Mm7|chr4 (73591700-73591891)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               mas (0.210305)
               

               
               hlv (0.139256)
               

               
               ste (0.135208)
               

               
               ese (0.126502)
               

               
               pgl (0.118483)
               

               
               ldo (0.0970026)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.210305)
               

               
               hlv (0.139256)
               

               
               ste (0.135208)
               

               
               ese (0.126502)
               

               
               pgl (0.118483)
               

               
               ldo (0.0970026)

	210-770, gnl\|bosTau2\|chr8 (42169293-42169848)
	210-770, gnl\|Hg17\|chr9 (83092989-83092431)
	210-770, gnl\|Mm7\|chr4 (73591034-73591586)

	884-1080, gnl\|bosTau2\|chr8 (42169979-42170171)
	884-1080, gnl\|Hg17\|chr9 (83092315-83092118)
	884-1080, gnl\|Mm7\|chr4 (73591700-73591891)

	mas (0.210305)
	hlv (0.139256)
	ste (0.135208)
	ese (0.126502)
	pgl (0.118483)
	ldo (0.0970026)