Ss1.1-Pig4-TMW8023K12.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCCACTGAGTGAGGCCAGGGCTCGCTGCTGCTGCAGTTCCGACCTCCTGCAGCCCATCTC AAAAAATTAGTGCAGAGAAAACCTGATGCCACCTCTCTGGGGCGTCCCGGGCCGATTACT TTCCCAGCTGCGTTGTGGGTTGACGTCTCCAGCCTCCGCACCAACCAGGATTTGCCCAAC AATGGCTCGTCCAAGTTCAAGTATGGCCGACTTTCGGAAGCATTTTGCAAAAGCCAAGCA CATAGTTGTCATTTCGGGGGCTGGTGTTAGTGCCGAGAGTGGGATTCCGACCTTCAGAGG AGCAGGAGGTTATTGGAGAAAATGGCAAGCTCAGGACCTGGCCACCCCTCAGGCCTTTGC CCGAAACCCGTCCCGGGTGTGGGAGTTCTACCACCACCGGCGGGAGGTGGTGCAGGGCAG GGCGCCCAACGCCGGGCACCTGGCCATCGCCCAGTGTGAGGCCCGGCTGCACGGGCAGGG CCGCCGGCTCGTGGTCATCACCCAGAACATCGACGAGCTGCACCGCAAGGCTGGCACCAA GAACCTTCTGGAAATCCATGGTAGTTTGTTTAAAACCCGGTGTACCTCTTGTGGAGCTGT AGCTGAGAATTACAAGAGTCCAATTTGTCCAGCTTTATCAGGAAAAGGTGCTCCAGAACC TGAGACTCAAGATGCCAGAATCCCAGTTGAGAAACTCCCTCGGTGTGAAGAGGCGGGATG CGGGGGCCTGCTGCGACCTCACGTCGTGTGGTTTGGAGAGAACCTGGACCCTGCCATCCT GGAGGAGGTTGACAGAGAGCTGGCCCTCTGTGACTTGTGTCTAGTGGTGGGAACGTCCTC GGTGGTCTACCCCGCGGCCCTCTTCGCCCCACAGGTGTCCGCCCGGGGAGTGCCGGTGGC CGAATTTAATGTGGAAGCGACCCCCGCCACCAACAGATTCAGGTTTCACTTCCAGGGGCC GTGTGGGACGACTCTTCCTGAAGCCCTAGCTCCTCATGAAACTGAACCTGTCTCTTAGTC GTCCCGGGGAAGGAAGAGATCACAGCACACCGAAGTACCAGGCCACCGACGGGAGGAGCT GCCTTGCCGATGGTGAGCTGGAGGTTGGAAGGTCTGGCAACATCTTGTGATTCTCCGGTT GGAATCCTCACTGCTGCCAAGTGACAGGGACGTAGAAGCAGGGGGAGTAAAGGTGTTCGG AAGTCATAGAACTTCTGAAGTCAATTCATGGGATTTGGTTTGAACCGAAACACAAGGTGC CTCTGACACGTTTGGTTGGTGACGGGGAGGGACACAAGTTTGTCAGGAAATGATCTAAAA GACGTAATTTTCCGGATTGTATTTCTGCTCTTTGGGCAAGGCTAGAAGTAGAGGGCTAAA GCCCTGGTATTTGTGACTTTTGCACAAGGTTTGGTGGAAAATAAAAGCACTCTCTACAGC CGGTCATTTGCTGTATAAAGATGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCCACTGAGTGAGGCCAGGGCTCGCTGCTGCTGCAGTTCCGACCTCCTGCAGCCCATCTC AAAAAATTAGTGCAGAGAAAACCTGATGCCACCTCTCTGGGGCGTCCCGGGCCGATTACT TTCCCAGCTGCGTTGTGGGTTGACGTCTCCAGCCTCCGCACCAACCAGGATTTGCCCAAC AATGGCTCGTCCAAGTTCAAGTATGGCCGACTTTCGGAAGCATTTTGCAAAAGCCAAGCA CATAGTTGTCATTTCGGGGGCTGGTGTTAGTGCCGAGAGTGGGATTCCGACCTTCAGAGG AGCAGGAGGTTATTGGAGAAAATGGCAAGCTCAGGACCTGGCCACCCCTCAGGCCTTTGC CCGAAACCCGTCCCGGGTGTGGGAGTTCTACCACCACCGGCGGGAGGTGGTGCAGGGCAG GGCGCCCAACGCCGGGCACCTGGCCATCGCCCAGTGTGAGGCCCGGCTGCACGGGCAGGG CCGCCGGCTCGTGGTCATCACCCAGAACATCGACGAGCTGCACCGCAAGGCTGGCACCAA GAACCTTCTGGAAATCCATGGTAGTTTGTTTAAAACCCGGTGTACCTCTTGTGGAGCTGT AGCTGAGAATTACAAGAGTCCAATTTGTCCAGCTTTATCAGGAAAAGGTGCTCCAGAACC TGAGACTCAAGATGCCAGAATCCCAGTTGAGAAACTCCCTCGGTGTGAAGAGGCGGGATG CGGGGGCCTGCTGCGACCTCACGTCGTGTGGTTTGGAGAGAACCTGGACCCTGCCATCCT GGAGGAGGTTGACAGAGAGCTGGCCCTCTGTGACTTGTGTCTAGTGGTGGGAACGTCCTC GGTGGTCTACCCCGCGGCCCTCTTCGCCCCACAGGTGTCCGCCCGGGGAGTGCCGGTGGC CGAATTTAATGTGGAAGCGACCCCCGCCACCAACAGATTCAGGTTTCACTTCCAGGGGCC GTGTGGGACGACTCTTCCTGAAGCCCTAGCTCCTCATGAAACTGAACCTGTCTCTTAGTC GTCCCGGGGAAGGAAGAGATCACAGCACACCGAAGTACCAGGCCACCGACGGGAGGAGCT GCCTTGCCGATGGTGAGCTGGAGGTTGGAAGGTCTGGCAACATCTTGTGATTCTCCGGTT GGAATCCTCACTGCTGCCAAGTGACAGGGACGTAGAAGCAGGGGGAGTAAAGGTGTTCGG AAGTCATAGAACTTCTGAAGTCAATTCATGGGATTTGGTTTGAACCGAAACACAAGGTGC CTCTGACACGTTTGGTTGGTGACGGGGAGGGACACAAGTTTGTCAGGAAATGATCTAAAA GACGTAATTTTCCGGATTGTATTTCTGCTCTTTGGGCAAGGCTAGAAGTAGAGGGCTAAA GCCCTGGTATTTGTGACTTTTGCACAAGGTTTGGTGGAAAATAAAAGCACTCTCTACAGC CGGTCATTTGCTGTATAAAGATGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 702-828, + strand, RNAz p=0.95863 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 702-828, + strand, RNAz p=0.95863 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of BX538030, + |
| Aligned organism(s): 60 entry(ies) | More info |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
| 73-203, gnl|bosTau2|chr23 (38872430-38872560) | |
| 73-203, gnl|canFam2|chr35 (16035085-16035256) | |
| 73-203, gnl|dasNov1|scaffold_173432 (309-496) | |
| 73-203, gnl|echTel1|scaffold_325025 (135349-135184) | |
| 73-203, gnl|galGal2|chr2 (60263179-60263346) | |
| 73-203, gnl|hg17|chr6 (13692259-13692443) | |
| 73-203, gnl|Hg17|chr6 (13692309-13692439) | |
| 73-203, gnl|loxAfr1|scaffold_26884 (33715-33535) | |
| 73-203, gnl|mm7|chr13 (42810963-42811141) | |
| 73-203, gnl|Mm7|chr13 (42811010-42811137) | |
| 73-203, gnl|monDom2|scaffold_3 (101410910-101411088) | |
| 73-203, gnl|oryCun1|scaffold_205544 (80933-80755) | |
| 73-203, gnl|panTro1|chr5 (13983799-13983983) | |
| 73-203, gnl|rheMac2|chr4 (13548204-13548391) | |
| 73-203, gnl|rn3|chr17 (27159955-27159778) | |
| 73-203, gnl|xenTro1|scaffold_923 (276708-276877) | |
| 332-562, gnl|bosTau2|chr23 (38875589-38875819) | |
| 332-562, gnl|Hg17|chr6 (13699877-13700107) | |
| 332-562, gnl|Mm7|chr13 (42816958-42817188) | |
| 702-828, gnl|bosTau2|chr23 (38879759-38879885) | |
| 702-828, gnl|canFam2|chr35 (16051739-16051862) | |
| 702-828, gnl|canFam2|chr35 (16051748-16051869) | |
| 702-828, gnl|canFam2|chr35 (16051738-16051886) | |
| 702-828, gnl|danRer3|chrUn (113197368-113197238) | |
| 702-828, gnl|dasNov1|scaffold_129941 (5462-5339) | |
| 702-828, gnl|dasNov1|scaffold_129941 (5453-5332) | |
| 702-828, gnl|dasNov1|scaffold_181602 (623-475) | |
| 702-828, gnl|echTel1|scaffold_17803 (1602-1725) | |
| 702-828, gnl|echTel1|scaffold_17803 (1611-1732) | |
| 702-828, gnl|echTel1|scaffold_17803 (1602-1725) | |
| 702-828, gnl|fr1|chrUn (132921276-132921145) | |
| 702-828, gnl|galGal2|chr2 (60269437-60269567) | |
| 702-828, gnl|hg17|chr1 (68221637-68221756) | |
| 702-828, gnl|hg17|chr6 (13707242-13707390) | |
| 702-828, gnl|Hg17|chr6 (13707242-13707368) | |
| 702-828, gnl|hg17|chr8 (60896287-60896418) | |
| 702-828, gnl|loxAfr1|scaffold_17859 (7948-7825) | |
| 702-828, gnl|loxAfr1|scaffold_17859 (7939-7821) | |
| 702-828, gnl|loxAfr1|scaffold_17859 (7949-7803) | |
| 702-828, gnl|mm7|chr13 (42823375-42823498) | |
| 702-828, gnl|mm7|chr13 (42823384-42823502) | |
| 702-828, gnl|mm7|chr13 (42823374-42823522) | |
| 702-828, gnl|Mm7|chr13 (42823374-42823500) | |
| 702-828, gnl|oryCun1|scaffold_199942 (102-240) | |
| 702-828, gnl|oryCun1|scaffold_26898 (789-671) | |
| 702-828, gnl|oryCun1|scaffold_26898 (782-664) | |
| 702-828, gnl|panTro1|chr1 (66782582-66782701) | |
| 702-828, gnl|panTro1|chr5 (13998873-13999021) | |
| 702-828, gnl|panTro1|chr7 (62681412-62681543) | |
| 702-828, gnl|rheMac2|chr4 (13567759-13567875) | |
| 702-828, gnl|rheMac2|chr4 (13567749-13567897) | |
| 702-828, gnl|rheMac2|chr8 (62431893-62432024) | |
| 702-828, gnl|rn3|chr17 (27145357-27145234) | |
| 702-828, gnl|rn3|chr17 (27145348-27145230) | |
| 702-828, gnl|rn3|chr17 (27145358-27145210) | |
| 702-828, gnl|tetNig1|chrUn_random (44504597-44504465) | |
| 702-828, gnl|xenTro1|scaffold_923 (284091-284222) | |
| 938-1463, gnl|bosTau2|chr23 (38888508-38889027) | |
| 938-1463, gnl|Hg17|chr6 (13719996-13720522) | |
| 938-1463, gnl|Mm7|chr13 (42834999-42835543) |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 73-203, gnl|bosTau2|chr23 (38872430-38872560) | |
| 73-203, gnl|canFam2|chr35 (16035085-16035256) | |
| 73-203, gnl|dasNov1|scaffold_173432 (309-496) | |
| 73-203, gnl|echTel1|scaffold_325025 (135349-135184) | |
| 73-203, gnl|galGal2|chr2 (60263179-60263346) | |
| 73-203, gnl|hg17|chr6 (13692259-13692443) | |
| 73-203, gnl|Hg17|chr6 (13692309-13692439) | |
| 73-203, gnl|loxAfr1|scaffold_26884 (33715-33535) | |
| 73-203, gnl|mm7|chr13 (42810963-42811141) | |
| 73-203, gnl|Mm7|chr13 (42811010-42811137) | |
| 73-203, gnl|monDom2|scaffold_3 (101410910-101411088) | |
| 73-203, gnl|oryCun1|scaffold_205544 (80933-80755) | |
| 73-203, gnl|panTro1|chr5 (13983799-13983983) | |
| 73-203, gnl|rheMac2|chr4 (13548204-13548391) | |
| 73-203, gnl|rn3|chr17 (27159955-27159778) | |
| 73-203, gnl|xenTro1|scaffold_923 (276708-276877) | |
| 332-562, gnl|bosTau2|chr23 (38875589-38875819) | |
| 332-562, gnl|Hg17|chr6 (13699877-13700107) | |
| 332-562, gnl|Mm7|chr13 (42816958-42817188) | |
| 702-828, gnl|bosTau2|chr23 (38879759-38879885) | |
| 702-828, gnl|canFam2|chr35 (16051739-16051862) | |
| 702-828, gnl|canFam2|chr35 (16051748-16051869) | |
| 702-828, gnl|canFam2|chr35 (16051738-16051886) | |
| 702-828, gnl|danRer3|chrUn (113197368-113197238) | |
| 702-828, gnl|dasNov1|scaffold_129941 (5462-5339) | |
| 702-828, gnl|dasNov1|scaffold_129941 (5453-5332) | |
| 702-828, gnl|dasNov1|scaffold_181602 (623-475) | |
| 702-828, gnl|echTel1|scaffold_17803 (1602-1725) | |
| 702-828, gnl|echTel1|scaffold_17803 (1611-1732) | |
| 702-828, gnl|echTel1|scaffold_17803 (1602-1725) | |
| 702-828, gnl|fr1|chrUn (132921276-132921145) | |
| 702-828, gnl|galGal2|chr2 (60269437-60269567) | |
| 702-828, gnl|hg17|chr1 (68221637-68221756) | |
| 702-828, gnl|hg17|chr6 (13707242-13707390) | |
| 702-828, gnl|Hg17|chr6 (13707242-13707368) | |
| 702-828, gnl|hg17|chr8 (60896287-60896418) | |
| 702-828, gnl|loxAfr1|scaffold_17859 (7948-7825) | |
| 702-828, gnl|loxAfr1|scaffold_17859 (7939-7821) | |
| 702-828, gnl|loxAfr1|scaffold_17859 (7949-7803) | |
| 702-828, gnl|mm7|chr13 (42823375-42823498) | |
| 702-828, gnl|mm7|chr13 (42823384-42823502) | |
| 702-828, gnl|mm7|chr13 (42823374-42823522) | |
| 702-828, gnl|Mm7|chr13 (42823374-42823500) | |
| 702-828, gnl|oryCun1|scaffold_199942 (102-240) | |
| 702-828, gnl|oryCun1|scaffold_26898 (789-671) | |
| 702-828, gnl|oryCun1|scaffold_26898 (782-664) | |
| 702-828, gnl|panTro1|chr1 (66782582-66782701) | |
| 702-828, gnl|panTro1|chr5 (13998873-13999021) | |
| 702-828, gnl|panTro1|chr7 (62681412-62681543) | |
| 702-828, gnl|rheMac2|chr4 (13567759-13567875) | |
| 702-828, gnl|rheMac2|chr4 (13567749-13567897) | |
| 702-828, gnl|rheMac2|chr8 (62431893-62432024) | |
| 702-828, gnl|rn3|chr17 (27145357-27145234) | |
| 702-828, gnl|rn3|chr17 (27145348-27145230) | |
| 702-828, gnl|rn3|chr17 (27145358-27145210) | |
| 702-828, gnl|tetNig1|chrUn_random (44504597-44504465) | |
| 702-828, gnl|xenTro1|scaffold_923 (284091-284222) | |
| 938-1463, gnl|bosTau2|chr23 (38888508-38889027) | |
| 938-1463, gnl|Hg17|chr6 (13719996-13720522) | |
| 938-1463, gnl|Mm7|chr13 (42834999-42835543) |
| Expressed library(ies): 16 entry(ies) | More info |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
| cte (0.29274) | |
| lnt (0.284616) | |
| eru (0.240096) | |
| ecc (0.23007) | |
| cty (0.20816) | |
| hea (0.204499) | |
| fcc (0.197785) | |
| aor (0.195274) | |
| fbs (0.175346) | |
| cje (0.165235) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| lyg (0.133103) | |
| ese (0.126502) | |
| bla (0.124347) | |
| pgl (0.118483) |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cte (0.29274) | |
| lnt (0.284616) | |
| eru (0.240096) | |
| ecc (0.23007) | |
| cty (0.20816) | |
| hea (0.204499) | |
| fcc (0.197785) | |
| aor (0.195274) | |
| fbs (0.175346) | |
| cje (0.165235) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| lyg (0.133103) | |
| ese (0.126502) | |
| bla (0.124347) | |
| pgl (0.118483) |