Non-Coding RNA Search

Ss1.1-Pig4-TMW8023K20.3

Sequence:


               
               GCCTGGGGCGTCCTCGGCGTCCTCTGGTTCGGCCCGCGCTCGCGACAGCAGACCTGGGCG
GCGGGCGGGAAGCGCGGGGGCTCCAGCGCGTGAGCGCGAGCGGCGCCCGCCCCTCCCCCG
CCCGGCGCTGCTCGGTGGGCCGGGGTTCGGCGGGGGAGCCAAGCCGCGAGAGCGTCAGGT
GAGGGGGCGCCCGACTCAAGGTCAGCGGGCGTGGGGGCGGGATCAGGGGCCGTCCCGGCT
CTGTCCCCGCCGCTCACCGAGAAGGGCGTGTGACCTGGCGGAGACCACGCCCTGTCCTGA
ACCGGCCCGGACAGACCGCGCTGCTGGGGATGCAGGGGACATCTTGGGAGAGCCAGGGAC
CCGGCTCAGGCCTCGCATTGCGCCCGAGGGCGTTGTGGGGCTTCCTCCCTTAACGCCCCC
CCCCCCGCCCCCGCACAGATGGGTCCCTTGGAGGCAGTGGCAGGCGTCCGGTGTGTGACG
CTCCACCCCTGCCTGGGCAGATTAGGGGGTTGTCCTCTGGGTAAAAGGATTTCTGGGCTG
GCCTCCCCTGCTTTTCCTGCTTGGGTCCTCAACCCTGCCCAGGCCAGCCCATCTACACGA
ATCAGCACCTAGCCGGTGTCCGGTTGAACAGCAGTCCCCTGAGTCATGAGGAGGCCAAGA
ATCTTCCCTATTTGCAAGGCCTTGCCCCTGGAAGCCTGGTGGGGGCCCTTTTGCTCAAGA
AGATGGATCCCAGGGGCTCAGAGAATGCCCCCAACTTCTTGGGGTTCACACATTCTGAGA
CATCTGGGAAGTGCCTCTGCCTGGGCCAAAACTGTTCCATTAAAACTTTTGCTGTGCCTA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCTGGGGCGTCCTCGGCGTCCTCTGGTTCGGCCCGCGCTCGCGACAGCAGACCTGGGCG
GCGGGCGGGAAGCGCGGGGGCTCCAGCGCGTGAGCGCGAGCGGCGCCCGCCCCTCCCCCG
CCCGGCGCTGCTCGGTGGGCCGGGGTTCGGCGGGGGAGCCAAGCCGCGAGAGCGTCAGGT
GAGGGGGCGCCCGACTCAAGGTCAGCGGGCGTGGGGGCGGGATCAGGGGCCGTCCCGGCT
CTGTCCCCGCCGCTCACCGAGAAGGGCGTGTGACCTGGCGGAGACCACGCCCTGTCCTGA
ACCGGCCCGGACAGACCGCGCTGCTGGGGATGCAGGGGACATCTTGGGAGAGCCAGGGAC
CCGGCTCAGGCCTCGCATTGCGCCCGAGGGCGTTGTGGGGCTTCCTCCCTTAACGCCCCC
CCCCCCGCCCCCGCACAGATGGGTCCCTTGGAGGCAGTGGCAGGCGTCCGGTGTGTGACG
CTCCACCCCTGCCTGGGCAGATTAGGGGGTTGTCCTCTGGGTAAAAGGATTTCTGGGCTG
GCCTCCCCTGCTTTTCCTGCTTGGGTCCTCAACCCTGCCCAGGCCAGCCCATCTACACGA
ATCAGCACCTAGCCGGTGTCCGGTTGAACAGCAGTCCCCTGAGTCATGAGGAGGCCAAGA
ATCTTCCCTATTTGCAAGGCCTTGCCCCTGGAAGCCTGGTGGGGGCCCTTTTGCTCAAGA
AGATGGATCCCAGGGGCTCAGAGAATGCCCCCAACTTCTTGGGGTTCACACATTCTGAGA
CATCTGGGAAGTGCCTCTGCCTGGGCCAAAACTGTTCCATTAAAACTTTTGCTGTGCCTA
AAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               718-832, - strand, RNAz p=0.717726

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               718-832, - strand, RNAz p=0.717726

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-837, gnl|bosTau2|chr14 (3237678-3238524)
               

               
               1-837, gnl|Hg17|chr8 (145723320-145722414)
               

               
               1-837, gnl|Mm7|chr15 (76804840-76804024)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-837, gnl|bosTau2|chr14 (3237678-3238524)
               

               
               1-837, gnl|Hg17|chr8 (145723320-145722414)
               

               
               1-837, gnl|Mm7|chr15 (76804840-76804024)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               nms (0.213858)
               

               
               mas (0.210305)
               

               
               fty (0.17584)
               

               
               lnt (0.142308)
               

               
               ssp (0.13552)
               

               
               nbm (0.0993246)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               fty (0.17584)
               

               
               lnt (0.142308)
               

               
               ssp (0.13552)
               

               
               nbm (0.0993246)

	1-837, gnl\|bosTau2\|chr14 (3237678-3238524)
	1-837, gnl\|Hg17\|chr8 (145723320-145722414)
	1-837, gnl\|Mm7\|chr15 (76804840-76804024)

	nms (0.213858)
	mas (0.210305)
	fty (0.17584)
	lnt (0.142308)
	ssp (0.13552)
	nbm (0.0993246)