Ss1.1-Pig4-TMW8023K21.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGCTCCCCGGAACGGTGCAAGGAGGATACCTGCCGCCCGTCTGTGGCATGGAGAGCCTC TTTCCTTATGGCCCCACGATGCCGCAGACCCTGGCGGGGCTGTCCCCGGGCGCGCTGCTG CAGCAGTACCAACAGTATCAGCAGAACCTGCAAGACTCCCTGCAGAAGCAGCAAAAGCAA CAACAGCAAGAGCAGCCGCAGAAACCAGGTCAGGCCAAGACATCCAAAGGCGAGAGCGAG CCGCCGCAGAACGCCAGCGATGCTTCGGAGACAAAGGAAGACAAGAGTACCGCTACAGAA AGCACAAAAGAAGAACCCCAGTTAGAATCCAAAAGTGCAGACTTTTCGGACACTTACGTT GTTCCATTCGTCAAGTATGAGTTTATATGCAGAAAGTGCCAGATGATGTTTACTGATGAA GATGCCGCAGTAAATCATCAAAAGTCCTTCTGTTATTTTGGTCAGCCTTTGATTGACCCA CAAGAGACAGTGCTTCGTGTCCCGGTCAGCAGATATCAGTGTCTTGCCTGTGATGTGGCT ATCAGTGGGAATGAAGCACTTAGCCAACACCTCCAGTCAAGCTTGCACAAAGAGAAAACA ATCAAACAAGCAATGAGAAATGCCAAAGAGCATGTTAGATTATTACCTCACTCAGTCTGC TCCCCTAATCCTAACACCACATCTACCTCGCAGTCTGCAGCTTCTTCTAACACCTATCCT CATCTTTCTTGCTTCTCCATGAAGTCCTGGCCTAATATCCTTTTCCAAGCATCTGCCAGG AGAGCTGCTTCTTCCCCCTCTTCTCCTCCTTCCCTTTCCTTGCCTTCAACGGTTACCTCA AGTTTGTGCAGCACCTCAGGGGTTCAAACCTCACTACCCACAGAAAGTTGTTCAGATGAG TCTGACAGTGAGCTGAGCCAGAAGCTAGAAGACTTAGATAATTCTTTGGAAGTGAAGGCT AAGCCTGCTTCTGGCCTTGATGGTAATTTCAATAGCATCCGAATGGATATGTTCAGTGTG TAGGAGTGAAGACAGGATCCCGTGCTTAAAAAAAATAAAAAATAAATAAAAAAATAAAAA AATTTAAAAAATTAAACAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGCTCCCCGGAACGGTGCAAGGAGGATACCTGCCGCCCGTCTGTGGCATGGAGAGCCTC TTTCCTTATGGCCCCACGATGCCGCAGACCCTGGCGGGGCTGTCCCCGGGCGCGCTGCTG CAGCAGTACCAACAGTATCAGCAGAACCTGCAAGACTCCCTGCAGAAGCAGCAAAAGCAA CAACAGCAAGAGCAGCCGCAGAAACCAGGTCAGGCCAAGACATCCAAAGGCGAGAGCGAG CCGCCGCAGAACGCCAGCGATGCTTCGGAGACAAAGGAAGACAAGAGTACCGCTACAGAA AGCACAAAAGAAGAACCCCAGTTAGAATCCAAAAGTGCAGACTTTTCGGACACTTACGTT GTTCCATTCGTCAAGTATGAGTTTATATGCAGAAAGTGCCAGATGATGTTTACTGATGAA GATGCCGCAGTAAATCATCAAAAGTCCTTCTGTTATTTTGGTCAGCCTTTGATTGACCCA CAAGAGACAGTGCTTCGTGTCCCGGTCAGCAGATATCAGTGTCTTGCCTGTGATGTGGCT ATCAGTGGGAATGAAGCACTTAGCCAACACCTCCAGTCAAGCTTGCACAAAGAGAAAACA ATCAAACAAGCAATGAGAAATGCCAAAGAGCATGTTAGATTATTACCTCACTCAGTCTGC TCCCCTAATCCTAACACCACATCTACCTCGCAGTCTGCAGCTTCTTCTAACACCTATCCT CATCTTTCTTGCTTCTCCATGAAGTCCTGGCCTAATATCCTTTTCCAAGCATCTGCCAGG AGAGCTGCTTCTTCCCCCTCTTCTCCTCCTTCCCTTTCCTTGCCTTCAACGGTTACCTCA AGTTTGTGCAGCACCTCAGGGGTTCAAACCTCACTACCCACAGAAAGTTGTTCAGATGAG TCTGACAGTGAGCTGAGCCAGAAGCTAGAAGACTTAGATAATTCTTTGGAAGTGAAGGCT AAGCCTGCTTCTGGCCTTGATGGTAATTTCAATAGCATCCGAATGGATATGTTCAGTGTG TAGGAGTGAAGACAGGATCCCGTGCTTAAAAAAAATAAAAAATAAATAAAAAAATAAAAA AATTTAAAAAATTAAACAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 40-159, - strand, RNAz p=0.77153 | |
| 875-990, - strand, RNAz p=0.654425 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 40-159, - strand, RNAz p=0.77153 | |
| 875-990, - strand, RNAz p=0.654425 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 1-204, gnl|bosTau2|chr18 (33590529-33590732) | |
| 1-204, gnl|Hg17|chr16 (71379712-71379506) | |
| 1-204, gnl|Mm7|chr8 (107556049-107556294) | |
| 514-711, gnl|bosTau2|chr18 (33591126-33591323) | |
| 514-711, gnl|canFam2|chr5 (81462200-81462354) | |
| 514-711, gnl|danRer3|chr7 (55363194-55363351) | |
| 514-711, gnl|dasNov1|scaffold_947 (5492-5646) | |
| 514-711, gnl|fr1|chrUn (148153710-148153550) | |
| 514-711, gnl|galGal2|chr11_random (763547-763393) | |
| 514-711, gnl|hg17|chr16 (71378890-71379044) | |
| 514-711, gnl|Hg17|chr16 (71379091-71378894) | |
| 514-711, gnl|loxAfr1|scaffold_17395 (16774-16620) | |
| 514-711, gnl|mm7|chr8 (107556921-107556767) | |
| 514-711, gnl|Mm7|chr8 (107556718-107556915) | |
| 514-711, gnl|monDom2|scaffold_23 (2417653-2417807) | |
| 514-711, gnl|oryCun1|scaffold_205430 (6751-6905) | |
| 514-711, gnl|panTro1|chr18 (65742575-65742729) | |
| 514-711, gnl|rheMac2|chr20 (69867306-69867152) | |
| 514-711, gnl|rn3|chr19 (38788020-38787866) | |
| 514-711, gnl|tetNig1|chr5 (5912082-5911922) | |
| 514-711, gnl|xenTro1|scaffold_13 (3887078-3887232) | |
| 796-1092, gnl|bosTau2|chr18 (33591432-33591728) | |
| 796-1092, gnl|Hg17|chr16 (71378791-71378494) | |
| 796-1092, gnl|Mm7|chr8 (107557018-107557314) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-204, gnl|bosTau2|chr18 (33590529-33590732) | |
| 1-204, gnl|Hg17|chr16 (71379712-71379506) | |
| 1-204, gnl|Mm7|chr8 (107556049-107556294) | |
| 514-711, gnl|bosTau2|chr18 (33591126-33591323) | |
| 514-711, gnl|canFam2|chr5 (81462200-81462354) | |
| 514-711, gnl|danRer3|chr7 (55363194-55363351) | |
| 514-711, gnl|dasNov1|scaffold_947 (5492-5646) | |
| 514-711, gnl|fr1|chrUn (148153710-148153550) | |
| 514-711, gnl|galGal2|chr11_random (763547-763393) | |
| 514-711, gnl|hg17|chr16 (71378890-71379044) | |
| 514-711, gnl|Hg17|chr16 (71379091-71378894) | |
| 514-711, gnl|loxAfr1|scaffold_17395 (16774-16620) | |
| 514-711, gnl|mm7|chr8 (107556921-107556767) | |
| 514-711, gnl|Mm7|chr8 (107556718-107556915) | |
| 514-711, gnl|monDom2|scaffold_23 (2417653-2417807) | |
| 514-711, gnl|oryCun1|scaffold_205430 (6751-6905) | |
| 514-711, gnl|panTro1|chr18 (65742575-65742729) | |
| 514-711, gnl|rheMac2|chr20 (69867306-69867152) | |
| 514-711, gnl|rn3|chr19 (38788020-38787866) | |
| 514-711, gnl|tetNig1|chr5 (5912082-5911922) | |
| 514-711, gnl|xenTro1|scaffold_13 (3887078-3887232) | |
| 796-1092, gnl|bosTau2|chr18 (33591432-33591728) | |
| 796-1092, gnl|Hg17|chr16 (71378791-71378494) | |
| 796-1092, gnl|Mm7|chr8 (107557018-107557314) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sug (0.127291) | |
| med (0.116252) | |
| jca (0.11396) |