Non-Coding RNA Search

Ss1.1-Pig4-TMW8023L01.3

Sequence:


               
               CTGCTGCCCCTCGCTGCCGACCTCCGGAGCGTGGACGCTGGGTGTGCCGGCCATGGTCCC
CCGGTTGGAGGCCGAGCTCTTGGTACTGAACCCGCTGCGCGCCGTATGGCTCACGCTGGC
CGCCGCCTTCCTGTTGACCCTCCTGCTGCAGCTCATGCCGCCCCGCCTGCTTCCGGGCTG
CGCGCTCTTCCAGGACCTCATCCGCCATGGAAAAACGAAGCATGGGGGACCGCCGCGCCC
TGCTATCTGCCGGGCCTTTGATGTCCCCAAGAGGTACTTTTCTCACTTCTACATCATGTC
AGTGCTGTGGAACGGCTTCCTGCTTTGGAACCTCACTCAAGCTCTCTTCCTGGGAGTGCC
TTTTCCAGACTGGCTTCATGTTTTGCTGAGACTTCTTGGGGCTGCGCAGTTGCGAGTCAA
TGTGATAGGGAAGAATCTCGTGATGCAGGCTCGGTGGTTCCATATCCTTGGAATGATGAT
GTTCATCTGGTCATCTGTCCATCAGTATAAGTGCCATGTCATTCTGGGCAACCTCAGGAA
AAATAAAGCAGGAGTGGTCATTCACTGTAACCACCGAATCCCTTTTGGAGACTGGTTTGA
ATACGTTTCTTCTCCTAACTACTTAGCAGAGCTTATGATCTACATTTCCATGGCTGTCAC
CTTTGGATTCCACAACTTAACTTGGTGGCTCGTGGTAACATACGTCTTCTTCAACCAGGC
CCTGTCTGCTTTCCTCAGTCACAAGTTCTACAGAAGCAAATTTGTCTCCTATCCAAAGCA
TAGGAAAGCTTTCCTACCATTTCTGTTTTAAGAAAACCTCAGTCATGAAGAATGCGAACC
AGGTGATGCGTACGATTCTTAAGGACCACGAAGTCTAGAGATCAAAGTACACTCTCTGCT
GGACTGCTTGAAACTCTGTTCCATTTCTGTATCCAAAAGTCTTCACTGAATGAGCAAAGC
ACTATTCCTCAAGGAAAAGAGTCTTCAGAGAAGAAATACTTGTGACAGACCTGAGAGAGC
TTTGTAAAACCAACAAACTGCTCAAAAGTAGATGAGACCTCTGCAAACTGCTTTAAAATC
CGACTAACCAAGAACATACGAACAGCTTCAAACCTACACAGAGGAAGAGAGAAGTCATCC
ATGGCTTCGTTTTCGCTACAGACAAATTAACTAGACCACACAGTGTAGTAGGTGCTCAGT
AACTGTTTATCATATTGCAATCAAGGCAGAATAGCCTTTGAAAATGACGACAATGTGTAA
GTTATACCAATGGATTCAGAGAAAAATGAGTTTATGGGAATTAGTTTATACTTTGATTTA
TTACCACAGGGATTTCTGTATGTAATTAATCATTAGTAATCGTCTCCCCCTCAAATCATA
GCCTGACAGAAAGTGTGAAACCTTTTATGTAATACTTTTTTGACGTCCCTTTCAAAGGAG
TACCTTAAAAGTGAAAGCATCTGAAAATAAACTATTTTTATATTTATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGCTGCCCCTCGCTGCCGACCTCCGGAGCGTGGACGCTGGGTGTGCCGGCCATGGTCCC
CCGGTTGGAGGCCGAGCTCTTGGTACTGAACCCGCTGCGCGCCGTATGGCTCACGCTGGC
CGCCGCCTTCCTGTTGACCCTCCTGCTGCAGCTCATGCCGCCCCGCCTGCTTCCGGGCTG
CGCGCTCTTCCAGGACCTCATCCGCCATGGAAAAACGAAGCATGGGGGACCGCCGCGCCC
TGCTATCTGCCGGGCCTTTGATGTCCCCAAGAGGTACTTTTCTCACTTCTACATCATGTC
AGTGCTGTGGAACGGCTTCCTGCTTTGGAACCTCACTCAAGCTCTCTTCCTGGGAGTGCC
TTTTCCAGACTGGCTTCATGTTTTGCTGAGACTTCTTGGGGCTGCGCAGTTGCGAGTCAA
TGTGATAGGGAAGAATCTCGTGATGCAGGCTCGGTGGTTCCATATCCTTGGAATGATGAT
GTTCATCTGGTCATCTGTCCATCAGTATAAGTGCCATGTCATTCTGGGCAACCTCAGGAA
AAATAAAGCAGGAGTGGTCATTCACTGTAACCACCGAATCCCTTTTGGAGACTGGTTTGA
ATACGTTTCTTCTCCTAACTACTTAGCAGAGCTTATGATCTACATTTCCATGGCTGTCAC
CTTTGGATTCCACAACTTAACTTGGTGGCTCGTGGTAACATACGTCTTCTTCAACCAGGC
CCTGTCTGCTTTCCTCAGTCACAAGTTCTACAGAAGCAAATTTGTCTCCTATCCAAAGCA
TAGGAAAGCTTTCCTACCATTTCTGTTTTAAGAAAACCTCAGTCATGAAGAATGCGAACC
AGGTGATGCGTACGATTCTTAAGGACCACGAAGTCTAGAGATCAAAGTACACTCTCTGCT
GGACTGCTTGAAACTCTGTTCCATTTCTGTATCCAAAAGTCTTCACTGAATGAGCAAAGC
ACTATTCCTCAAGGAAAAGAGTCTTCAGAGAAGAAATACTTGTGACAGACCTGAGAGAGC
TTTGTAAAACCAACAAACTGCTCAAAAGTAGATGAGACCTCTGCAAACTGCTTTAAAATC
CGACTAACCAAGAACATACGAACAGCTTCAAACCTACACAGAGGAAGAGAGAAGTCATCC
ATGGCTTCGTTTTCGCTACAGACAAATTAACTAGACCACACAGTGTAGTAGGTGCTCAGT
AACTGTTTATCATATTGCAATCAAGGCAGAATAGCCTTTGAAAATGACGACAATGTGTAA
GTTATACCAATGGATTCAGAGAAAAATGAGTTTATGGGAATTAGTTTATACTTTGATTTA
TTACCACAGGGATTTCTGTATGTAATTAATCATTAGTAATCGTCTCCCCCTCAAATCATA
GCCTGACAGAAAGTGTGAAACCTTTTATGTAATACTTTTTTGACGTCCCTTTCAAAGGAG
TACCTTAAAAGTGAAAGCATCTGAAAATAAACTATTTTTATATTTATG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61863166|ref|XP_598584.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61863166|ref|XP_598584.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               549-1025, gnl|bosTau2|chr6 (39169475-39169009)
               

               
               549-1025, gnl|Hg17|chr4 (56076924-56077414)
               

               
               549-1025, gnl|Mm7|chr5 (76086843-76087295)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               549-1025, gnl|bosTau2|chr6 (39169475-39169009)
               

               
               549-1025, gnl|Hg17|chr4 (56076924-56077414)
               

               
               549-1025, gnl|Mm7|chr5 (76086843-76087295)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               rec (0.346141)
               

               
               aor (0.195274)
               

               
               gul (0.177588)
               

               
               eye (0.170503)
               

               
               eli (0.151814)
               

               
               ret (0.128733)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.346141)
               

               
               aor (0.195274)
               

               
               gul (0.177588)
               

               
               eye (0.170503)
               

               
               eli (0.151814)
               

               
               ret (0.128733)

	549-1025, gnl\|bosTau2\|chr6 (39169475-39169009)
	549-1025, gnl\|Hg17\|chr4 (56076924-56077414)
	549-1025, gnl\|Mm7\|chr5 (76086843-76087295)

	rec (0.346141)
	aor (0.195274)
	gul (0.177588)
	eye (0.170503)
	eli (0.151814)
	ret (0.128733)