Ss1.1-Pig4-TMW8023L03.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TAATGTACCTATTTTATAGATGAGGAAATTGTCATTCAAGGAAATTGATTCTTGTGCCCA AGATCACCATCTAACTTGTAGAACCAGATTTCAGTCCCCAAGTTCAGTATCTTTCTATTG CCCTGTACCATTTTTTTTAAAAAGTGAAAATATTCTTTGAATTCATTGGCCCTAATTCTC TCTTCAGTTTGCTCTCCTAGTAGTCAACTCTGGTTTTTTTCTTTAGGCCCATATCCTTTG AAGACCATTAACTGGCTGTTTCTGGTACTTTTGAATTCTCCCCATGATCCAGAAATGGCT CTCTTTTCCTTGAATAATCTTGGGGTGAGCACTGAATTGCCTTAAAAACCCTATGCAGTG AGAGGGTCCAGGTGTGTGTGTCATAGTCCTTTCATTACTGTTTACCTCTAGGTTTGTTTG TTTGTTTGAAGATGTATGAGCAATAATTACATCATATATGTAGACTACTTTCACCTCTTA TATATTGACATGTTCATCACGAAAACATAGAGTTCTTGGAAAGAACATAACACCTTTTTC TGATGAAATCAGCTCTATTTAGAAAACTCTTTAAGTTGTTACTGCTGTTTTCCTCAACCT GGAGGAGTTACAAGCCACAACACAGAAAGCTTCATTCTTTATAATCAGGGGAAAGTCATA TGGTACTTCTTTGTAGAGCAAGAAAACCAAAAAAGAATTTTGGTTAAGTAGCATATCTTT TTAATCTTGTGTGAATTTTGATCAAGTCCCATCTAAATTATTATATAGACACAAGCATGA AATGACAACATATAAGTAGGTTATGGTTGTTTTTAAGTTATCGGCCTTTTTAGGTTAGCT GCATCTTTGTACCTTTTCATTCATAAAAGTAATCAGACATGAACTGTGACTTCGCTTGTA TATAATTTGATTAAGTAATACTGCTAAGATGTGTCATATTTAAATTTATACAACTATGTT GTGGTATTCTTTTCAAAATAAAGTTTACTTAGGAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TAATGTACCTATTTTATAGATGAGGAAATTGTCATTCAAGGAAATTGATTCTTGTGCCCA AGATCACCATCTAACTTGTAGAACCAGATTTCAGTCCCCAAGTTCAGTATCTTTCTATTG CCCTGTACCATTTTTTTTAAAAAGTGAAAATATTCTTTGAATTCATTGGCCCTAATTCTC TCTTCAGTTTGCTCTCCTAGTAGTCAACTCTGGTTTTTTTCTTTAGGCCCATATCCTTTG AAGACCATTAACTGGCTGTTTCTGGTACTTTTGAATTCTCCCCATGATCCAGAAATGGCT CTCTTTTCCTTGAATAATCTTGGGGTGAGCACTGAATTGCCTTAAAAACCCTATGCAGTG AGAGGGTCCAGGTGTGTGTGTCATAGTCCTTTCATTACTGTTTACCTCTAGGTTTGTTTG TTTGTTTGAAGATGTATGAGCAATAATTACATCATATATGTAGACTACTTTCACCTCTTA TATATTGACATGTTCATCACGAAAACATAGAGTTCTTGGAAAGAACATAACACCTTTTTC TGATGAAATCAGCTCTATTTAGAAAACTCTTTAAGTTGTTACTGCTGTTTTCCTCAACCT GGAGGAGTTACAAGCCACAACACAGAAAGCTTCATTCTTTATAATCAGGGGAAAGTCATA TGGTACTTCTTTGTAGAGCAAGAAAACCAAAAAAGAATTTTGGTTAAGTAGCATATCTTT TTAATCTTGTGTGAATTTTGATCAAGTCCCATCTAAATTATTATATAGACACAAGCATGA AATGACAACATATAAGTAGGTTATGGTTGTTTTTAAGTTATCGGCCTTTTTAGGTTAGCT GCATCTTTGTACCTTTTCATTCATAAAAGTAATCAGACATGAACTGTGACTTCGCTTGTA TATAATTTGATTAAGTAATACTGCTAAGATGTGTCATATTTAAATTTATACAACTATGTT GTGGTATTCTTTTCAAAATAAAGTTTACTTAGGAAA |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 1-124, gnl|bosTau2|chr4 (36925536-36925663) | |
| 1-124, gnl|canFam2|chr14 (45749987-45750191) | |
| 1-124, gnl|echTel1|scaffold_246585 (2881-2679) | |
| 1-124, gnl|hg17|chr7 (29825710-29825905) | |
| 1-124, gnl|Hg17|chr7 (29825880-29825759) | |
| 1-124, gnl|loxAfr1|scaffold_8324 (5800-6002) | |
| 1-124, gnl|mm7|chr6 (54541688-54541864) | |
| 1-124, gnl|Mm7|chr6 (54541839-54541727) | |
| 1-124, gnl|oryCun1|scaffold_207221 (136072-136285) | |
| 1-124, gnl|panTro1|chr6 (30939224-30939420) | |
| 1-124, gnl|rheMac2|chr3 (96189901-96189704) | |
| 1-124, gnl|rn3|chr4 (83269682-83269842) | |
| 175-379, gnl|bosTau2|chr4 (36925679-36925879) | |
| 175-379, gnl|canFam2|chr14 (45749725-45749986) | |
| 175-379, gnl|echTel1|scaffold_246585 (3101-2882) | |
| 175-379, gnl|hg17|chr7 (29825506-29825709) | |
| 175-379, gnl|Hg17|chr7 (29825723-29825534) | |
| 175-379, gnl|loxAfr1|scaffold_8324 (5584-5799) | |
| 175-379, gnl|mm7|chr6 (54541500-54541687) | |
| 175-379, gnl|Mm7|chr6 (54541710-54541524) | |
| 175-379, gnl|oryCun1|scaffold_207221 (135565-135965) | |
| 175-379, gnl|panTro1|chr6 (30939020-30939223) | |
| 175-379, gnl|rheMac2|chr3 (96190102-96189902) | |
| 175-379, gnl|rn3|chr4 (83269491-83269681) | |
| 435-655, gnl|bosTau2|chr4 (36925903-36926124) | |
| 435-655, gnl|Hg17|chr7 (29825485-29825283) | |
| 690-810, gnl|bosTau2|chr4 (36926198-36926316) | |
| 690-810, gnl|canFam2|chr14 (45749275-45749418) | |
| 690-810, gnl|dasNov1|scaffold_150157 (83-227) | |
| 690-810, gnl|echTel1|scaffold_246585 (3461-3341) | |
| 690-810, gnl|hg17|chr7 (29825098-29825238) | |
| 690-810, gnl|Hg17|chr7 (29825211-29825097) | |
| 690-810, gnl|loxAfr1|scaffold_8324 (4622-4764) | |
| 690-810, gnl|mm7|chr6 (54541159-54541283) | |
| 690-810, gnl|Mm7|chr6 (54541257-54541156) | |
| 690-810, gnl|oryCun1|scaffold_207221 (133650-133791) | |
| 690-810, gnl|panTro1|chr6 (30938617-30938757) | |
| 690-810, gnl|rheMac2|chr3 (96190510-96190370) | |
| 690-810, gnl|rn3|chr4 (83269129-83269253) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-124, gnl|bosTau2|chr4 (36925536-36925663) | |
| 1-124, gnl|canFam2|chr14 (45749987-45750191) | |
| 1-124, gnl|echTel1|scaffold_246585 (2881-2679) | |
| 1-124, gnl|hg17|chr7 (29825710-29825905) | |
| 1-124, gnl|Hg17|chr7 (29825880-29825759) | |
| 1-124, gnl|loxAfr1|scaffold_8324 (5800-6002) | |
| 1-124, gnl|mm7|chr6 (54541688-54541864) | |
| 1-124, gnl|Mm7|chr6 (54541839-54541727) | |
| 1-124, gnl|oryCun1|scaffold_207221 (136072-136285) | |
| 1-124, gnl|panTro1|chr6 (30939224-30939420) | |
| 1-124, gnl|rheMac2|chr3 (96189901-96189704) | |
| 1-124, gnl|rn3|chr4 (83269682-83269842) | |
| 175-379, gnl|bosTau2|chr4 (36925679-36925879) | |
| 175-379, gnl|canFam2|chr14 (45749725-45749986) | |
| 175-379, gnl|echTel1|scaffold_246585 (3101-2882) | |
| 175-379, gnl|hg17|chr7 (29825506-29825709) | |
| 175-379, gnl|Hg17|chr7 (29825723-29825534) | |
| 175-379, gnl|loxAfr1|scaffold_8324 (5584-5799) | |
| 175-379, gnl|mm7|chr6 (54541500-54541687) | |
| 175-379, gnl|Mm7|chr6 (54541710-54541524) | |
| 175-379, gnl|oryCun1|scaffold_207221 (135565-135965) | |
| 175-379, gnl|panTro1|chr6 (30939020-30939223) | |
| 175-379, gnl|rheMac2|chr3 (96190102-96189902) | |
| 175-379, gnl|rn3|chr4 (83269491-83269681) | |
| 435-655, gnl|bosTau2|chr4 (36925903-36926124) | |
| 435-655, gnl|Hg17|chr7 (29825485-29825283) | |
| 690-810, gnl|bosTau2|chr4 (36926198-36926316) | |
| 690-810, gnl|canFam2|chr14 (45749275-45749418) | |
| 690-810, gnl|dasNov1|scaffold_150157 (83-227) | |
| 690-810, gnl|echTel1|scaffold_246585 (3461-3341) | |
| 690-810, gnl|hg17|chr7 (29825098-29825238) | |
| 690-810, gnl|Hg17|chr7 (29825211-29825097) | |
| 690-810, gnl|loxAfr1|scaffold_8324 (4622-4764) | |
| 690-810, gnl|mm7|chr6 (54541159-54541283) | |
| 690-810, gnl|Mm7|chr6 (54541257-54541156) | |
| 690-810, gnl|oryCun1|scaffold_207221 (133650-133791) | |
| 690-810, gnl|panTro1|chr6 (30938617-30938757) | |
| 690-810, gnl|rheMac2|chr3 (96190510-96190370) | |
| 690-810, gnl|rn3|chr4 (83269129-83269253) |
| Expressed library(ies): 16 entry(ies) | More info |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
| ova (0.516529) | |
| lin (0.291206) | |
| ret (0.257467) | |
| pan (0.23596) | |
| mgp (0.230681) | |
| mgm (0.180343) | |
| rec (0.17307) | |
| duo (0.172801) | |
| eye (0.170503) | |
| mga (0.160205) | |
| tbr (0.154178) | |
| liv (0.146284) | |
| nca (0.136874) | |
| ute (0.132784) | |
| kid (0.129735) | |
| eru (0.120048) |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ova (0.516529) | |
| lin (0.291206) | |
| ret (0.257467) | |
| pan (0.23596) | |
| mgp (0.230681) | |
| mgm (0.180343) | |
| rec (0.17307) | |
| duo (0.172801) | |
| eye (0.170503) | |
| mga (0.160205) | |
| tbr (0.154178) | |
| liv (0.146284) | |
| nca (0.136874) | |
| ute (0.132784) | |
| kid (0.129735) | |
| eru (0.120048) |