Non-Coding RNA Search

Ss1.1-Pig4-TMW8023L06.3

Sequence:


               
               CCCCCCGTGCCCAGACGAAGAGGTGATGGCGGAGGGGGTGCCCTCTCTTTGCTGTCATCC
AATCCCCAGCAAAATTTGGACGTGAGAAACCCCCTTCTTTTTTCATGGCAAGTCCAGATC
CTCCTTCTCAGAGAAGCCGTTGCCTCCCAGACACTGTGGAGGGCTGATGGAGCAGGGACA
AACGCGTGCCCCCTTAGCGCCTGGCGGCCCCTCCTCTGAAAGGTGAGCACAGTGCTGACT
GTGGCGACTGTTTGCGCGTGGGGTTGAGTAGCGGCAAGAACCCGACAGAGTCGCTGCCCC
GTCCTGAGTCGCAGTGACACAGGTGGCCCAGTGCAGAGGGAGCTGGCTCCAGCCCAGAAG
CCCGCCCGAGGGTGGGCAAGGCGTGCGTGGGGCGCGGGGAACAGCCCAGGACAGACTTGG
CTGGAGATGTCTCCAAAAGCCCTCTATCGCATTCACCTTCAGTTTTTGTGTTTTGGGACA
ATTACTTTAGAAAAATAAGTAGGTCGTTTTAAAAACAAAAAATATTGATTGCTTTTTTGT
AGTGTTCAAAAAAAGGTTCTTTGTGTATAGCCAAATGACTGAAAGCACTGATATATTTAA
AAACAAAAGGCAATTTATTAAGGAAATTTGTACCATTTCAGTAAACCTGTCTGAATGTAC
CTGTATACGTTTCAAAAACACCCCCCACTGAATCCCTGTAACCTATTTATTATATAAAGA
GTTTGCCTTATAAATTTACATAAAAATGTCCGTTTGTGTCTTTTGTTGTAAAATCAAGTG
ATTTTTTCATAAGGTTCTTTTACTATTTGAAAAGATGGGCAGCACGCAGTTTCCTTTTAT
TTTTGTAAGTTTTTTAATACGTGTGAAAGCCAAGAATACTCAGCATGCCTTTCTAAGTGA
CGCGTTTGCACCTTTTGTTGGGAAGTACTGTATCCTGTGCTGTTAGCATTCTCGATAAAT
CTCTCTGTGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCCCCGTGCCCAGACGAAGAGGTGATGGCGGAGGGGGTGCCCTCTCTTTGCTGTCATCC
AATCCCCAGCAAAATTTGGACGTGAGAAACCCCCTTCTTTTTTCATGGCAAGTCCAGATC
CTCCTTCTCAGAGAAGCCGTTGCCTCCCAGACACTGTGGAGGGCTGATGGAGCAGGGACA
AACGCGTGCCCCCTTAGCGCCTGGCGGCCCCTCCTCTGAAAGGTGAGCACAGTGCTGACT
GTGGCGACTGTTTGCGCGTGGGGTTGAGTAGCGGCAAGAACCCGACAGAGTCGCTGCCCC
GTCCTGAGTCGCAGTGACACAGGTGGCCCAGTGCAGAGGGAGCTGGCTCCAGCCCAGAAG
CCCGCCCGAGGGTGGGCAAGGCGTGCGTGGGGCGCGGGGAACAGCCCAGGACAGACTTGG
CTGGAGATGTCTCCAAAAGCCCTCTATCGCATTCACCTTCAGTTTTTGTGTTTTGGGACA
ATTACTTTAGAAAAATAAGTAGGTCGTTTTAAAAACAAAAAATATTGATTGCTTTTTTGT
AGTGTTCAAAAAAAGGTTCTTTGTGTATAGCCAAATGACTGAAAGCACTGATATATTTAA
AAACAAAAGGCAATTTATTAAGGAAATTTGTACCATTTCAGTAAACCTGTCTGAATGTAC
CTGTATACGTTTCAAAAACACCCCCCACTGAATCCCTGTAACCTATTTATTATATAAAGA
GTTTGCCTTATAAATTTACATAAAAATGTCCGTTTGTGTCTTTTGTTGTAAAATCAAGTG
ATTTTTTCATAAGGTTCTTTTACTATTTGAAAAGATGGGCAGCACGCAGTTTCCTTTTAT
TTTTGTAAGTTTTTTAATACGTGTGAAAGCCAAGAATACTCAGCATGCCTTTCTAAGTGA
CGCGTTTGCACCTTTTGTTGGGAAGTACTGTATCCTGTGCTGTTAGCATTCTCGATAAAT
CTCTCTGTGAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               337-451, - strand, RNAz p=0.76886

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               337-451, - strand, RNAz p=0.76886

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               22-972, gnl|bosTau2|chr7 (6403776-6402842)
               

               
               22-972, gnl|canFam2|chrX (124908015-124908646)
               

               
               22-972, gnl|dasNov1|scaffold_209465 (3784-4455)
               

               
               22-972, gnl|echTel1|scaffold_262120 (2612-3265)
               

               
               22-972, gnl|hg17|chrX (152807828-152808518)
               

               
               22-972, gnl|Hg17|chrX (152808851-152807875)
               

               
               22-972, gnl|loxAfr1|scaffold_39600 (11596-12243)
               

               
               22-972, gnl|mm7|chrX (69413199-69413871)
               

               
               22-972, gnl|Mm7|chrX (69414202-69413245)
               

               
               22-972, gnl|monDom2|scaffold_216 (154041-154661)
               

               
               22-972, gnl|panTro1|chrX (158124250-158124925)
               

               
               22-972, gnl|rheMac2|chrX (152147875-152148545)
               

               
               22-972, gnl|rn3|chrX (160046277-160046939)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               22-972, gnl|bosTau2|chr7 (6403776-6402842)
               

               
               22-972, gnl|canFam2|chrX (124908015-124908646)
               

               
               22-972, gnl|dasNov1|scaffold_209465 (3784-4455)
               

               
               22-972, gnl|echTel1|scaffold_262120 (2612-3265)
               

               
               22-972, gnl|hg17|chrX (152807828-152808518)
               

               
               22-972, gnl|Hg17|chrX (152808851-152807875)
               

               
               22-972, gnl|loxAfr1|scaffold_39600 (11596-12243)
               

               
               22-972, gnl|mm7|chrX (69413199-69413871)
               

               
               22-972, gnl|Mm7|chrX (69414202-69413245)
               

               
               22-972, gnl|monDom2|scaffold_216 (154041-154661)
               

               
               22-972, gnl|panTro1|chrX (158124250-158124925)
               

               
               22-972, gnl|rheMac2|chrX (152147875-152148545)
               

               
               22-972, gnl|rn3|chrX (160046277-160046939)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

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               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               cki (0.165235)
               

               
               mga (0.160205)
               

               
               che (0.136314)
               

               
               ova (0.129132)
               

               
               jca (0.11396)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               cki (0.165235)
               

               
               mga (0.160205)
               

               
               che (0.136314)
               

               
               ova (0.129132)
               

               
               jca (0.11396)

	22-972, gnl\|bosTau2\|chr7 (6403776-6402842)
	22-972, gnl\|canFam2\|chrX (124908015-124908646)
	22-972, gnl\|dasNov1\|scaffold_209465 (3784-4455)
	22-972, gnl\|echTel1\|scaffold_262120 (2612-3265)
	22-972, gnl\|hg17\|chrX (152807828-152808518)
	22-972, gnl\|Hg17\|chrX (152808851-152807875)
	22-972, gnl\|loxAfr1\|scaffold_39600 (11596-12243)
	22-972, gnl\|mm7\|chrX (69413199-69413871)
	22-972, gnl\|Mm7\|chrX (69414202-69413245)
	22-972, gnl\|monDom2\|scaffold_216 (154041-154661)
	22-972, gnl\|panTro1\|chrX (158124250-158124925)
	22-972, gnl\|rheMac2\|chrX (152147875-152148545)
	22-972, gnl\|rn3\|chrX (160046277-160046939)

	cbe (0.239234)
	mgp (0.230681)
	cki (0.165235)
	mga (0.160205)
	che (0.136314)
	ova (0.129132)
	jca (0.11396)